mRNA_S-dermatodea_contig12078.1293.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12078.1293.1
Unique NamemRNA_S-dermatodea_contig12078.1293.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12078.1293.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12078contigS-dermatodea_contig12078:3252..3639 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size388
Cds size330
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12078.1293.1prot_S-dermatodea_contig12078.1293.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12078 3257..3586 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924230.007466-UTR-S-dermatodea_contig12078:3251..32561622924230.007466-UTR-S-dermatodea_contig12078:3251..3256Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12078 3252..3256 +
1694079110.2884243-UTR-S-dermatodea_contig12078:3251..32561694079110.2884243-UTR-S-dermatodea_contig12078:3251..3256Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12078 3252..3256 +
1622924230.0267956-UTR-S-dermatodea_contig12078:3586..36391622924230.0267956-UTR-S-dermatodea_contig12078:3586..3639Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12078 3587..3639 +
1694079110.3083372-UTR-S-dermatodea_contig12078:3586..36391694079110.3083372-UTR-S-dermatodea_contig12078:3586..3639Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12078 3587..3639 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924230.016217-CDS-S-dermatodea_contig12078:3256..35861622924230.016217-CDS-S-dermatodea_contig12078:3256..3586Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12078 3257..3586 +
1694079110.296595-CDS-S-dermatodea_contig12078:3256..35861694079110.296595-CDS-S-dermatodea_contig12078:3256..3586Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12078 3257..3586 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12078.1293.1

>prot_S-dermatodea_contig12078.1293.1 ID=prot_S-dermatodea_contig12078.1293.1|Name=mRNA_S-dermatodea_contig12078.1293.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=110bp
MRSTFASFPGKHALHSGLRLRAGRFLELPWGPGGISKVPRYSPRVGREES
VATVRIIMRTRSKGKEHERNVNHKCGGLPEFVRRRRDSGLTQNEHWTRMS
KGLGGCVLL*
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mRNA from alignment at S-dermatodea_contig12078:3252..3639+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12078.1293.1 ID=mRNA_S-dermatodea_contig12078.1293.1|Name=mRNA_S-dermatodea_contig12078.1293.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=388bp|location=Sequence derived from alignment at S-dermatodea_contig12078:3252..3639+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGCATATGCGATCTACCTTTGCTAGCTTCCCGGGGAAGCATGCGCTCCAT
TCAGGGCTCCGACTTAGAGCGGGGCGTTTCCTTGAGCTCCCTTGGGGACC
AGGAGGAATCAGCAAAGTACCTCGATACTCTCCCCGCGTAGGAAGAGAAG
AAAGTGTTGCGACTGTACGCATCATCATGCGCACGCGGTCGAAAGGAAAG
GAGCACGAACGCAATGTGAACCACAAGTGTGGAGGATTGCCAGAGTTTGT
AAGGCGTCGTCGCGACTCTGGTCTGACACAGAACGAGCACTGGACACGGA
TGAGCAAAGGGCTGGGAGGATGTGTACTGTTGTGAATGTGATGGAAACCT
AATTCCCGTCATTACTTGTGTTACGCTCGCTAGAATTT
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Coding sequence (CDS) from alignment at S-dermatodea_contig12078:3252..3639+

>mRNA_S-dermatodea_contig12078.1293.1 ID=mRNA_S-dermatodea_contig12078.1293.1|Name=mRNA_S-dermatodea_contig12078.1293.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=660bp|location=Sequence derived from alignment at S-dermatodea_contig12078:3252..3639+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCGATCTACCTTTGCTAGCTTCCCGGGGAAGCATGCGCTCCATTCAGG
GCTCCGACTTAGAGCGGGGCGTTTCCTTGAGCTCCCTTGGGGACCAGGAG
GAATCAGCAAAGTACCTCGATACTCTCCCCGCGTAGGAAGAGAAGAAAGT
GTTGCGACTGTACGCATCATCATGCGCACGCGGTCGAAAGGAAAGGAGCA
CGAACGCAATGTGAACCACAAGTGTGGAGGATTGCCAGAGTTTGTAAGGC
GTCGTCGCGACTCTGGTCTGACACAGAACGAGCACTGGACACGGATGAGC
AAAGGGCTGGGAGGATGTGTACTGTTGTGAATGCGATCTACCTTTGCTAG
CTTCCCGGGGAAGCATGCGCTCCATTCAGGGCTCCGACTTAGAGCGGGGC
GTTTCCTTGAGCTCCCTTGGGGACCAGGAGGAATCAGCAAAGTACCTCGA
TACTCTCCCCGCGTAGGAAGAGAAGAAAGTGTTGCGACTGTACGCATCAT
CATGCGCACGCGGTCGAAAGGAAAGGAGCACGAACGCAATGTGAACCACA
AGTGTGGAGGATTGCCAGAGTTTGTAAGGCGTCGTCGCGACTCTGGTCTG
ACACAGAACGAGCACTGGACACGGATGAGCAAAGGGCTGGGAGGATGTGT
ACTGTTGTGA
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