mRNA_S-dermatodea_contig12078.1292.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12078.1292.1
Unique NamemRNA_S-dermatodea_contig12078.1292.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig12078.1292.1 vs. uniprot
Match: D7FHW5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHW5_ECTSI)

HSP 1 Score: 129 bits (324), Expect = 9.110e-37
Identity = 63/72 (87.50%), Postives = 66/72 (91.67%), Query Frame = 1
Query:   58 MEQATEQTKRICDEIKNGLKEMSLARYKYVVQVVIGEQRGEGVRMGSRCFWDSDTDNVASETYVNVRTAVTP 273
            M+QAT QTKRICDEIKNGLKEM+L RYKYVVQVVIGEQRGEGVRMGSRCFWDS+TDNVASETYVNVR    P
Sbjct:    1 MDQATVQTKRICDEIKNGLKEMNLPRYKYVVQVVIGEQRGEGVRMGSRCFWDSETDNVASETYVNVRVVRPP 72          
BLAST of mRNA_S-dermatodea_contig12078.1292.1 vs. uniprot
Match: A0A6H5L5Z1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5Z1_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 7.310e-36
Identity = 60/65 (92.31%), Postives = 63/65 (96.92%), Query Frame = 1
Query:   58 MEQATEQTKRICDEIKNGLKEMSLARYKYVVQVVIGEQRGEGVRMGSRCFWDSDTDNVASETYVN 252
            M+QAT QTKRICDEIKNGLKEM+L RYKYVVQVVIGEQRGEGVRMGSRCFWDS+TDNVASETYVN
Sbjct:    1 MDQATVQTKRICDEIKNGLKEMNLPRYKYVVQVVIGEQRGEGVRMGSRCFWDSETDNVASETYVN 65          
BLAST of mRNA_S-dermatodea_contig12078.1292.1 vs. uniprot
Match: A0A835ZG13_9STRA (Tctex-1 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG13_9STRA)

HSP 1 Score: 119 bits (299), Expect = 3.510e-33
Identity = 57/84 (67.86%), Postives = 69/84 (82.14%), Query Frame = 1
Query:    1 MREVIKGILDSELQGWTYHMEQATEQTKRICDEIKNGLKEMSLARYKYVVQVVIGEQRGEGVRMGSRCFWDSDTDNVASETYVN 252
            MRE+I+ IL+ +L G TY  + AT QTK+I DEIK+ LK MSL RYKYVVQV+IGEQRGEGVRMG RCFWD+DTD  ASE+++N
Sbjct:   13 MREIIRAILEEQLSGQTYSGDVATAQTKKISDEIKDRLKTMSLDRYKYVVQVIIGEQRGEGVRMGCRCFWDADTDACASESFIN 96          
BLAST of mRNA_S-dermatodea_contig12078.1292.1 vs. uniprot
Match: A0A6U6Z4C7_9DINO (Hypothetical protein n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A6U6Z4C7_9DINO)

HSP 1 Score: 109 bits (272), Expect = 6.940e-29
Identity = 52/83 (62.65%), Postives = 65/83 (78.31%), Query Frame = 1
Query:    4 REVIKGILDSELQGWTYHMEQATEQTKRICDEIKNGLKEMSLARYKYVVQVVIGEQRGEGVRMGSRCFWDSDTDNVASETYVN 252
            +E+IK +L S+L+   Y ME+    TK++ D+IK+ LKE++  RYK VVQV IGEQRG+GVRMGSRCFWDSDTDN ASETY N
Sbjct:   29 KEIIKEVLQSKLEKAQYSMEETQALTKQVADDIKDRLKELNWHRYKIVVQVAIGEQRGQGVRMGSRCFWDSDTDNFASETYSN 111          
BLAST of mRNA_S-dermatodea_contig12078.1292.1 vs. uniprot
Match: A0A507FCI1_9FUNG (Uncharacterized protein n=1 Tax=Spizellomyces sp. 'palustris' TaxID=117820 RepID=A0A507FCI1_9FUNG)

HSP 1 Score: 109 bits (272), Expect = 8.240e-29
Identity = 51/83 (61.45%), Postives = 63/83 (75.90%), Query Frame = 1
Query:    7 EVIKGILDSELQGWTYHMEQATEQTKRICDEIKNGLKEMSLARYKYVVQVVIGEQRGEGVRMGSRCFWDSDTDNVASETYVNV 255
            ++I  IL   L G TYH +  ++ T+ I DEIKN LKE+ L RYKY+V VVIGE RGEGVRMG RCFWD+DTDNVA +T++NV
Sbjct:   29 KLIHQILADRLTGATYHPDTCSQWTREIADEIKNRLKELDLPRYKYLVNVVIGEMRGEGVRMGCRCFWDADTDNVAQDTFINV 111          
BLAST of mRNA_S-dermatodea_contig12078.1292.1 vs. uniprot
Match: A0A7S3MAW9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MAW9_9STRA)

HSP 1 Score: 108 bits (270), Expect = 1.360e-28
Identity = 52/83 (62.65%), Postives = 65/83 (78.31%), Query Frame = 1
Query:    4 REVIKGILDSELQGWTYHMEQATEQTKRICDEIKNGLKEMSLARYKYVVQVVIGEQRGEGVRMGSRCFWDSDTDNVASETYVN 252
            RE+IK +L S+L+   Y+ME     TK++ D+IK+ LK++ L RYK VVQV IGEQRG+GVRMGSRCFWDSDTD+ ASETY N
Sbjct:   30 REIIKEVLQSKLEKAQYNMETTQALTKQVADDIKDRLKDLVLPRYKIVVQVAIGEQRGQGVRMGSRCFWDSDTDSYASETYSN 112          
BLAST of mRNA_S-dermatodea_contig12078.1292.1 vs. uniprot
Match: A0A507E5F5_9FUNG (Uncharacterized protein n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507E5F5_9FUNG)

HSP 1 Score: 106 bits (264), Expect = 1.170e-27
Identity = 49/84 (58.33%), Postives = 63/84 (75.00%), Query Frame = 1
Query:    1 MREVIKGILDSELQGWTYHMEQATEQTKRICDEIKNGLKEMSLARYKYVVQVVIGEQRGEGVRMGSRCFWDSDTDNVASETYVN 252
            ++++I   L   L G TY+ E  ++ TK I D+IKN LKE+ L RYKY+V VVIGE RGEGVRMG RCFWD+DTDNVA +T++N
Sbjct:   29 VQKLIHQALMDRLTGATYNAESCSQWTKEIADDIKNRLKELDLPRYKYIVNVVIGEMRGEGVRMGCRCFWDADTDNVAQDTFIN 112          
BLAST of mRNA_S-dermatodea_contig12078.1292.1 vs. uniprot
Match: A0A507CZQ7_9FUNG (Uncharacterized protein n=1 Tax=Synchytrium endobioticum TaxID=286115 RepID=A0A507CZQ7_9FUNG)

HSP 1 Score: 105 bits (261), Expect = 5.240e-27
Identity = 47/84 (55.95%), Postives = 63/84 (75.00%), Query Frame = 1
Query:    1 MREVIKGILDSELQGWTYHMEQATEQTKRICDEIKNGLKEMSLARYKYVVQVVIGEQRGEGVRMGSRCFWDSDTDNVASETYVN 252
            ++++I  +L S L G TY   Q +  T+ I D+IKN LKEM L RYKYVV VV+GEQRGEGVR+G+RC WD+DTDN+A + ++N
Sbjct:   45 VQKIIHDVLQSRLAGATYDHAQCSTWTREIADDIKNRLKEMDLKRYKYVVNVVLGEQRGEGVRIGARCLWDADTDNIAQDVFIN 128          
BLAST of mRNA_S-dermatodea_contig12078.1292.1 vs. uniprot
Match: A0A813IMB4_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813IMB4_POLGL)

HSP 1 Score: 105 bits (261), Expect = 6.530e-27
Identity = 50/83 (60.24%), Postives = 64/83 (77.11%), Query Frame = 1
Query:    4 REVIKGILDSELQGWTYHMEQATEQTKRICDEIKNGLKEMSLARYKYVVQVVIGEQRGEGVRMGSRCFWDSDTDNVASETYVN 252
            REVIK ++ ++L+  TY  +  +  TK++ DEIK+ LKE+ L RYK VVQV IGEQ+G+GVRMGSRCFWD DTD+ ASETY N
Sbjct:   54 REVIKDVMQAKLERATYSPDTTSLLTKQVADEIKDRLKELMLPRYKIVVQVAIGEQKGQGVRMGSRCFWDGDTDSYASETYSN 136          
BLAST of mRNA_S-dermatodea_contig12078.1292.1 vs. uniprot
Match: A0A2D4CDY2_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CDY2_PYTIN)

HSP 1 Score: 103 bits (258), Expect = 7.400e-27
Identity = 52/90 (57.78%), Postives = 65/90 (72.22%), Query Frame = 1
Query:    1 MREVIKGILDSELQGWTYHMEQATEQTKRICDEIKNGLKEMSLARYKYVVQVVIGEQRGEGVRMGSRCFWDSDTDNVASETYVNVRTAVT 270
            M+++I  IL  +L+G TY  ++A+  TK + D IK  LK  + AR KYVVQVVIGEQRGEGVRMG RCFWD +TD  ASETY N++  VT
Sbjct:   27 MKQIISQILQEKLEGATYQSDRASALTKELADAIKAQLKACNFARCKYVVQVVIGEQRGEGVRMGCRCFWDPETDCYASETYSNMQRIVT 116          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12078.1292.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHW5_ECTSI9.110e-3787.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L5Z1_9PHAE7.310e-3692.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZG13_9STRA3.510e-3367.86Tctex-1 (Fragment) n=1 Tax=Tribonema minus TaxID=3... [more]
A0A6U6Z4C7_9DINO6.940e-2962.65Hypothetical protein n=1 Tax=Alexandrium andersoni... [more]
A0A507FCI1_9FUNG8.240e-2961.45Uncharacterized protein n=1 Tax=Spizellomyces sp. ... [more]
A0A7S3MAW9_9STRA1.360e-2862.65Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A507E5F5_9FUNG1.170e-2758.33Uncharacterized protein n=1 Tax=Powellomyces hirtu... [more]
A0A507CZQ7_9FUNG5.240e-2755.95Uncharacterized protein n=1 Tax=Synchytrium endobi... [more]
A0A813IMB4_POLGL6.530e-2760.24Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A2D4CDY2_PYTIN7.400e-2757.78Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12078contigS-dermatodea_contig12078:2032..3052 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score130.6
Seed ortholog evalue3.8e-28
Seed eggNOG ortholog2880.D7FHW5
EggNOG free text desc.regulation of intraciliary retrograde transport
EggNOG OGsKOG4108@1,KOG4108@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTctex-1
Ec32 orthologEc-12_006150.1
Exons3
Model size276
Cds size276
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12078.1292.1prot_S-dermatodea_contig12078.1292.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12078 2032..3052 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924230.055997-CDS-S-dermatodea_contig12078:2031..20881622924230.055997-CDS-S-dermatodea_contig12078:2031..2088Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12078 2032..2088 +
1694079110.3197675-CDS-S-dermatodea_contig12078:2031..20881694079110.3197675-CDS-S-dermatodea_contig12078:2031..2088Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12078 2032..2088 +
1622924230.06673-CDS-S-dermatodea_contig12078:2487..25481622924230.06673-CDS-S-dermatodea_contig12078:2487..2548Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12078 2488..2548 +
1694079110.3314843-CDS-S-dermatodea_contig12078:2487..25481694079110.3314843-CDS-S-dermatodea_contig12078:2487..2548Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12078 2488..2548 +
1622924230.0772321-CDS-S-dermatodea_contig12078:2894..30521622924230.0772321-CDS-S-dermatodea_contig12078:2894..3052Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12078 2895..3052 +
1694079110.341862-CDS-S-dermatodea_contig12078:2894..30521694079110.341862-CDS-S-dermatodea_contig12078:2894..3052Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12078 2895..3052 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12078.1292.1

>prot_S-dermatodea_contig12078.1292.1 ID=prot_S-dermatodea_contig12078.1292.1|Name=mRNA_S-dermatodea_contig12078.1292.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=92bp
MREVIKGILDSELQGWTYHMEQATEQTKRICDEIKNGLKEMSLARYKYVV
QVVIGEQRGEGVRMGSRCFWDSDTDNVASETYVNVRTAVTPL
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mRNA from alignment at S-dermatodea_contig12078:2032..3052+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12078.1292.1 ID=mRNA_S-dermatodea_contig12078.1292.1|Name=mRNA_S-dermatodea_contig12078.1292.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1021bp|location=Sequence derived from alignment at S-dermatodea_contig12078:2032..3052+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCGAGAGGTCATCAAGGGGATCCTGGACTCAGAGCTTCAAGGCTGGAC GTATCACGTGAGAGATCTTTGTCGTCAACGGTTTACTTGTATGATACTTG TACGGGTATAGGGAACACAACAACACAACGCATGTTGTAGTGAGGACGCG CATGCACACCGACAATCTCTGCACCAAGCGTCTGTTGCCCATGATCAGTA GCAATGGACTCAGTGAGTGTACAGTTGTTTTCGCAGCTTACCAGTGCCGA CGAGGGCGATGTTCACGAAGTGTACGTACTGCTGTGCGAAGTATATCCAT AGAGCTCTACAGCAGTATGATACAGCAGTATGTATGGTACATTTTTCTAT CTGGCCAGAAAGCCACGGATACCGCACCGATCTTGCTGTCGCAGACACGA AGACATTCAGAGTAATGCCTCCATGTACTGAACGCGAGGTCCGCCTATAA TTACAGATGGAACAGGCCACCGAGCAGACTAAGAGGATTTGCGATGAGAT CAAGAATGGTCTCAAAGGTGAGCACATCCTATACATCTGGATAGAGATTC TGGACAGTCCGTAGTCGCAAGATACTCCCGCATATCCCCAGTGCCACACG GTGTGCGCAAACGTGTACGTGTACGTGAACCCTGTCTTGTGCTGAGCAAC GAAAAAGGCCCACACGTCACCCTTACCCTCCTCGTTCGAATCGTCGGAGG TTCAGGTTGGGATGATGGCTGGAATAATAGTTTCAATACAAACGGATATA TATGCTATTATATACCTGGTATAGTTTCCTGCTCAATCGACGGCTTGTTC CTTGGCCTTTCTCCTCCCCGCGTGCTGACTGTTTTTGTTTGGTCCCCATT GCGGTTGGCGTAGAAATGAGCCTCGCAAGGTACAAGTACGTGGTGCAGGT AGTGATAGGAGAACAGCGGGGGGAAGGCGTGCGCATGGGCAGCCGCTGTT TCTGGGACTCCGATACGGACAACGTCGCAAGCGAAACCTACGTCAACGTG AGAACAGCTGTAACACCGTTG
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Coding sequence (CDS) from alignment at S-dermatodea_contig12078:2032..3052+

>mRNA_S-dermatodea_contig12078.1292.1 ID=mRNA_S-dermatodea_contig12078.1292.1|Name=mRNA_S-dermatodea_contig12078.1292.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=552bp|location=Sequence derived from alignment at S-dermatodea_contig12078:2032..3052+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCGAGAGGTCATCAAGGGGATCCTGGACTCAGAGCTTCAAGGCTGGAC
GTATCACATGCGAGAGGTCATCAAGGGGATCCTGGACTCAGAGCTTCAAG
GCTGGACGTATCACATGGAACAGGCCACCGAGCAGACTAAGAGGATTTGC
GATGAGATCAAGAATGGTCTCAAAGATGGAACAGGCCACCGAGCAGACTA
AGAGGATTTGCGATGAGATCAAGAATGGTCTCAAAGAAATGAGCCTCGCA
AGGTACAAGTACGTGGTGCAGGTAGTGATAGGAGAACAGCGGGGGGAAGG
CGTGCGCATGGGCAGCCGCTGTTTCTGGGACTCCGATACGGACAACGTCG
CAAGCGAAACCTACGTCAACGTGAGAACAGCTGTAACACCGTTGAAATGA
GCCTCGCAAGGTACAAGTACGTGGTGCAGGTAGTGATAGGAGAACAGCGG
GGGGAAGGCGTGCGCATGGGCAGCCGCTGTTTCTGGGACTCCGATACGGA
CAACGTCGCAAGCGAAACCTACGTCAACGTGAGAACAGCTGTAACACCGT
TG
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