mRNA_S-dermatodea_contig12077.1291.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12077.1291.1
Unique NamemRNA_S-dermatodea_contig12077.1291.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig12077.1291.1 vs. uniprot
Match: A0A6L7TM31_9CHLR (Lectin_legB domain-containing protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A6L7TM31_9CHLR)

HSP 1 Score: 82.4 bits (202), Expect = 1.670e-16
Identity = 39/79 (49.37%), Postives = 47/79 (59.49%), Query Frame = 1
Query:    1 DRTSLRAVYDKTGGPWWTTRSGWRDSLPLEQWHGVTVDGEGRVTKLDLSNNNLEGNLPVELANLTALGELRLQGNKLEG 237
            DR +L+  YD   G  W     W  + PL+ W GV  D +GRVT LDL  NNL GN+P E+ NLTAL EL+L  N L G
Sbjct:  954 DRQTLKVFYDTMAGRGWHRSENWGTNAPLKNWQGVLTDDDGRVTHLDLVRNNLTGNVPPEVVNLTALTELQLDYNDLSG 1032          
BLAST of mRNA_S-dermatodea_contig12077.1291.1 vs. uniprot
Match: A0A2A2G600_9BACT (Two component regulator three Y domain protein (Fragment) n=1 Tax=Aliifodinibius sp. WN023 TaxID=2032627 RepID=A0A2A2G600_9BACT)

HSP 1 Score: 77.4 bits (189), Expect = 1.780e-16
Identity = 36/75 (48.00%), Postives = 43/75 (57.33%), Query Frame = 1
Query:    1 DRTSLRAVYDKTGGPWWTTRSGWRDSLPLEQWHGVTVDGEGRVTKLDLSNNNLEGNLPVELANLTALGELRLQGN 225
            DR +L  +Y  TGG  W   SGW    P   WHGV VD  GRV +LDL  N L+G LP  + NLT L  L ++GN
Sbjct:   31 DRQALMDLYSATGGDSWANNSGWGSGDPSGSWHGVEVDANGRVVRLDLWKNGLQGQLPSTIGNLTKLTYLNVKGN 105          
BLAST of mRNA_S-dermatodea_contig12077.1291.1 vs. uniprot
Match: D7G450_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G450_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 3.680e-16
Identity = 40/72 (55.56%), Postives = 48/72 (66.67%), Query Frame = 1
Query:    1 DRTSLRAVYDKTGGPWWTTRSGWRDSLPLEQWHGVTVDGEGRVTKLDLSNNNLEGNLPVELANLTALGELRL 216
            DRT L  +++ T GP WTT + W  S  L +W+GVTV+ EGRVTKLDL  NNL G +P  L  LTAL  LRL
Sbjct:  317 DRTVLMELFNTTKGPSWTTSTAWGTSSSLGEWYGVTVNAEGRVTKLDLEKNNLTGPIPPSLGGLTALLLLRL 388          
BLAST of mRNA_S-dermatodea_contig12077.1291.1 vs. uniprot
Match: A0A3C1PQ76_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Bacteroidales bacterium TaxID=2030927 RepID=A0A3C1PQ76_9BACT)

HSP 1 Score: 80.9 bits (198), Expect = 5.790e-16
Identity = 36/70 (51.43%), Postives = 46/70 (65.71%), Query Frame = 1
Query:    1 DRTSLRAVYDKTGGPWWTTRSGWRDSLPLEQWHGVTVDGEGRVTKLDLSNNNLEGNLPVELANLTALGEL 210
            DR +L A+Y+ TGG  W T++ W    PL  WHGVTV+  GRV  L+LS NNL GN+PVE+ NL  L  +
Sbjct:  512 DRAALIAIYNATGGANWITKTNWLSQEPLNAWHGVTVNANGRVIALNLSENNLIGNIPVEIGNLLELDSI 581          
BLAST of mRNA_S-dermatodea_contig12077.1291.1 vs. uniprot
Match: A0A7X3PID0_9BACT (Uncharacterized protein n=2 Tax=Bacteria TaxID=2 RepID=A0A7X3PID0_9BACT)

HSP 1 Score: 80.1 bits (196), Expect = 1.090e-15
Identity = 36/70 (51.43%), Postives = 47/70 (67.14%), Query Frame = 1
Query:    1 DRTSLRAVYDKTGGPWWTTRSGWRDSLPLEQWHGVTVDGEGRVTKLDLSNNNLEGNLPVELANLTALGEL 210
            DR++L A Y  T GP WT R  W    PL QW+GV VDG GRV++L+L +NN+ G +P EL +L+ L EL
Sbjct:  491 DRSALVAFYKATDGPNWTQRDNWLTDAPLAQWYGVQVDGRGRVSRLELHDNNVGGRIPAELGHLSGLVEL 560          
BLAST of mRNA_S-dermatodea_contig12077.1291.1 vs. uniprot
Match: A0A6B1AF42_9BACT (Uncharacterized protein n=2 Tax=Gemmatimonadales bacterium TaxID=2448054 RepID=A0A6B1AF42_9BACT)

HSP 1 Score: 80.1 bits (196), Expect = 1.090e-15
Identity = 37/80 (46.25%), Postives = 48/80 (60.00%), Query Frame = 1
Query:    1 DRTSLRAVYDKTGGPWWTTRSGWRDSLPLEQWHGVTVDGEGRVTKLDLSNNNLEGNLPVELANLTALGELRLQGNKLEGK 240
            D + LR +Y    G  W    GW    P+++W+GV  D  G V +LDLS+NNL G  P  LANL AL ELRL GN++ G+
Sbjct:  603 DVSVLRGLYAAAAGSGWIRSDGWLSERPVDEWYGVGADSLGMVVRLDLSDNNLVGEFPPRLANLAALRELRLTGNRVAGR 682          
BLAST of mRNA_S-dermatodea_contig12077.1291.1 vs. uniprot
Match: A0A7X3WB35_9BACT (Uncharacterized protein n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A7X3WB35_9BACT)

HSP 1 Score: 79.7 bits (195), Expect = 1.440e-15
Identity = 34/64 (53.12%), Postives = 45/64 (70.31%), Query Frame = 1
Query:    1 DRTSLRAVYDKTGGPWWTTRSGWRDSLPLEQWHGVTVDGEGRVTKLDLSNNNLEGNLPVELANL 192
            DR +L A YD TGGP WT R+ W  + PL++WHGV+ D +G VT+L L+ N+L+G LP EL  L
Sbjct:  379 DRNALIAFYDMTGGPDWTDRANWLSNAPLDEWHGVSTDADGMVTRLALNGNSLQGPLPEELGQL 442          
BLAST of mRNA_S-dermatodea_contig12077.1291.1 vs. uniprot
Match: A0A7X4B239_9BACT (Intimin n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A7X4B239_9BACT)

HSP 1 Score: 79.3 bits (194), Expect = 2.020e-15
Identity = 36/75 (48.00%), Postives = 48/75 (64.00%), Query Frame = 1
Query:    1 DRTSLRAVYDKTGGPWWTTRSGWRDSLPLEQWHGVTVDGEGRVTKLDLSNNNLEGNLPVELANLTALGELRLQGN 225
            +R +L A+Y++T GP WT  S W     L +WHGV  D EG+V K+DL +NNL G+LP  L +LT+L  L L  N
Sbjct:  505 ERDALIALYNRTDGPNWTNNSNWYSFKSLNEWHGVITDAEGKVVKVDLEDNNLNGSLPGSLGDLTSLTALNLSFN 579          
BLAST of mRNA_S-dermatodea_contig12077.1291.1 vs. uniprot
Match: A0A7X3R8N3_9BACT (Uncharacterized protein n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A7X3R8N3_9BACT)

HSP 1 Score: 77.8 bits (190), Expect = 4.330e-15
Identity = 33/64 (51.56%), Postives = 43/64 (67.19%), Query Frame = 1
Query:    1 DRTSLRAVYDKTGGPWWTTRSGWRDSLPLEQWHGVTVDGEGRVTKLDLSNNNLEGNLPVELANL 192
            DR +L   YD TGGP WT R+ W  + PL++WHGV+ D +G VT+L L+ N L+G LP EL  L
Sbjct:   99 DRNALIVFYDMTGGPDWTERANWLSNAPLDEWHGVSTDADGMVTRLALNGNTLQGPLPEELGQL 162          
BLAST of mRNA_S-dermatodea_contig12077.1291.1 vs. uniprot
Match: A0A6G2JIA8_9BACT (BIG2 domain-containing protein n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A6G2JIA8_9BACT)

HSP 1 Score: 78.2 bits (191), Expect = 5.050e-15
Identity = 35/73 (47.95%), Postives = 51/73 (69.86%), Query Frame = 1
Query:    1 DRTSLRAVYDKTGGPWWTTRSGWRDSLPLEQWHGVTVDGEGRVTKLDLSNNNLEGNLPVELANLTALGELRLQ 219
            DR +L A+Y+ TGGP W  ++ W   LPL  WHGV+++ +GRV +L L +NNL+G+LP E+A L  L +L L+
Sbjct:  157 DRDALVALYNGTGGPDWIIQTNWLSDLPLRDWHGVSLNDDGRVEELHLFDNNLKGSLPAEIAKLEELRKLVLR 229          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12077.1291.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6L7TM31_9CHLR1.670e-1649.37Lectin_legB domain-containing protein n=1 Tax=Chlo... [more]
A0A2A2G600_9BACT1.780e-1648.00Two component regulator three Y domain protein (Fr... [more]
D7G450_ECTSI3.680e-1655.56Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A3C1PQ76_9BACT5.790e-1651.43Uncharacterized protein (Fragment) n=1 Tax=Bactero... [more]
A0A7X3PID0_9BACT1.090e-1551.43Uncharacterized protein n=2 Tax=Bacteria TaxID=2 R... [more]
A0A6B1AF42_9BACT1.090e-1546.25Uncharacterized protein n=2 Tax=Gemmatimonadales b... [more]
A0A7X3WB35_9BACT1.440e-1553.13Uncharacterized protein n=1 Tax=Gemmatimonadetes b... [more]
A0A7X4B239_9BACT2.020e-1548.00Intimin n=1 Tax=Gemmatimonadetes bacterium TaxID=2... [more]
A0A7X3R8N3_9BACT4.330e-1551.56Uncharacterized protein n=1 Tax=Gemmatimonadetes b... [more]
A0A6G2JIA8_9BACT5.050e-1547.95BIG2 domain-containing protein n=1 Tax=Gemmatimona... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12077contigS-dermatodea_contig12077:4608..5310 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.9
Seed ortholog evalue3.1e-13
Seed eggNOG ortholog2880.D7G450
EggNOG free text desc.regulation of response to stimulus
EggNOG OGsCOG4886@1,KOG0619@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical leucine rich repeat protein
Ec32 orthologEc-15_003230.3
Exons2
Model size249
Cds size249
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924229.8885596-CDS-S-dermatodea_contig12077:4607..47701622924229.8885596-CDS-S-dermatodea_contig12077:4607..4770Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12077 4608..4770 +
1694079110.2294245-CDS-S-dermatodea_contig12077:4607..47701694079110.2294245-CDS-S-dermatodea_contig12077:4607..4770Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12077 4608..4770 +
1622924229.9048843-CDS-S-dermatodea_contig12077:5224..53101622924229.9048843-CDS-S-dermatodea_contig12077:5224..5310Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12077 5225..5310 +
1694079110.2427227-CDS-S-dermatodea_contig12077:5224..53101694079110.2427227-CDS-S-dermatodea_contig12077:5224..5310Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12077 5225..5310 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12077.1291.1prot_S-dermatodea_contig12077.1291.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12077 4608..5310 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12077.1291.1

>prot_S-dermatodea_contig12077.1291.1 ID=prot_S-dermatodea_contig12077.1291.1|Name=mRNA_S-dermatodea_contig12077.1291.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=83bp
DRTSLRAVYDKTGGPWWTTRSGWRDSLPLEQWHGVTVDGEGRVTKLDLSN
NNLEGNLPVELANLTALGELRLQGNKLEGKSV*
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mRNA from alignment at S-dermatodea_contig12077:4608..5310+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12077.1291.1 ID=mRNA_S-dermatodea_contig12077.1291.1|Name=mRNA_S-dermatodea_contig12077.1291.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=703bp|location=Sequence derived from alignment at S-dermatodea_contig12077:4608..5310+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GACCGCACTTCCCTCCGGGCGGTGTACGACAAAACGGGCGGCCCCTGGTG GACCACGAGGTCGGGTTGGCGCGATTCTCTTCCGCTCGAGCAATGGCACG GCGTGACCGTGGATGGAGAAGGTCGGGTGACCAAGCTGGATCTAAGCAAC AACAACTTGGAGGGTACGCAGCGCGCAGCGATTTGCAGCGGATTTCCCCG TCGTCGAGTGCGGAGCGCGGACATGTGACGCCTGTCCAGCGTTGTCGTGG AGGCTGCCATAAATAAGTAAAGACGTCGATGCGACGACGTTTTCACGTTG TGGTCGCTCACGGGTTAGACCACGCCGAAAATCGATCCCCCTCGCCTCGC GCTGGTTCATTGCGGAGGTTCATATTTTGTTCCGCGGTGCTTCAGTGGCT CCAGTCTCGTCAACAACCGTAGCGTTTGATAGCAGCAGTACACCAGCTTT ATCCACGCTGTACGCGTCCGTTACATATGCGACCATGAGGTCGAGCCGAA GGCCCGGTGCCTTATATATCGCCATGTCTCATGGCCGGCACCATCGACAT GGCGATTCATTGTGATTTTCAACAAGCGCCCAACCCGATGGGTTCCACCG ATTTGCCTAAATATCAGGCAATCTCCCTGTGGAATTGGCCAATCTCACTG CTTTGGGGGAGCTGAGACTCCAGGGCAACAAACTCGAGGGTAAGAGCGTG TGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig12077:4608..5310+

>mRNA_S-dermatodea_contig12077.1291.1 ID=mRNA_S-dermatodea_contig12077.1291.1|Name=mRNA_S-dermatodea_contig12077.1291.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=498bp|location=Sequence derived from alignment at S-dermatodea_contig12077:4608..5310+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GACCGCACTTCCCTCCGGGCGGTGTACGACAAAACGGGCGGCCCCTGGTG
GACCACGAGGTCGGGTTGGCGCGATTCTCTTCCGCTCGAGCAATGGCACG
GCGTGACCGTGGATGGAGAAGGTCGGGTGACCAAGCTGGATCTAAGCAAC
AACAACTTGGAGGGACCGCACTTCCCTCCGGGCGGTGTACGACAAAACGG
GCGGCCCCTGGTGGACCACGAGGTCGGGTTGGCGCGATTCTCTTCCGCTC
GAGCAATGGCACGGCGTGACCGTGGATGGAGAAGGTCGGGTGACCAAGCT
GGATCTAAGCAACAACAACTTGGAGGGCAATCTCCCTGTGGAATTGGCCA
ATCTCACTGCTTTGGGGGAGCTGAGACTCCAGGGCAACAAACTCGAGGGT
AAGAGCGTGTGAGCAATCTCCCTGTGGAATTGGCCAATCTCACTGCTTTG
GGGGAGCTGAGACTCCAGGGCAACAAACTCGAGGGTAAGAGCGTGTGA
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