mRNA_S-dermatodea_contig12067.1290.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12067.1290.1
Unique NamemRNA_S-dermatodea_contig12067.1290.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig12067.1290.1 vs. uniprot
Match: A0A6H5KPL1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPL1_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 1.870e-8
Identity = 34/49 (69.39%), Postives = 39/49 (79.59%), Query Frame = 1 
Query:  361 SDSSDD-PGVRRSVITGKRIMMSLD-RTKEDHARERGRKQLLQFMNAQI 501
            SD+SDD PGVRRS ITGK+I M L+ +T EDHAR  GRK LLQFMN+Q 
Sbjct:  128 SDTSDDEPGVRRSAITGKKIRMKLENQTTEDHARAAGRKHLLQFMNSQF 176
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BLAST of mRNA_S-dermatodea_contig12067.1290.1 vs. uniprot
Match: A0A835ZG69_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG69_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 1.060e-7
Identity = 28/53 (52.83%), Postives = 38/53 (71.70%), Query Frame = 1 
Query:  340 RYSHDGESDSSDDPGVRRSVITGKRIMMSLDRTKEDHARERGRKQLLQFMNAQ 498
            ++   G+    D PGV+RSVITG+ I M +D+T +D ARERGR +LL FMN+Q
Sbjct:  128 KHRKGGDDSDGDAPGVKRSVITGEVIKMKIDKTADDRARERGRAELLAFMNSQ 180
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BLAST of mRNA_S-dermatodea_contig12067.1290.1 vs. uniprot
Match: A0A6S9KA90_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9KA90_HETAK)

HSP 1 Score: 57.8 bits (138), Expect = 1.480e-7
Identity = 29/42 (69.05%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:  370 SDDPGVRRSVITGKRIMMSLDRTKEDHARERGRKQLLQFMNA 495
            SDDP VRRS I+GK+I M LDR  +D ARERGR+ LL FMNA
Sbjct:  100 SDDPDVRRSAISGKKIKMKLDRDDDDLARERGRRHLLHFMNA 141
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BLAST of mRNA_S-dermatodea_contig12067.1290.1 vs. uniprot
Match: K0S0A4_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S0A4_THAOC)

HSP 1 Score: 53.5 bits (127), Expect = 6.590e-6
Identity = 26/45 (57.78%), Postives = 34/45 (75.56%), Query Frame = 1 
Query:  367 SSDDPGVRRSVITGKRIMMSLDRTKEDHARERGRKQLLQFMNAQI 501
            S D P VRRSVITGK+I M +++  +D ARER RK LL+FMN+ +
Sbjct:  107 SDDGPNVRRSVITGKKIKMHIEKDADDIARERARKDLLKFMNSSL 151
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BLAST of mRNA_S-dermatodea_contig12067.1290.1 vs. uniprot
Match: A0A835R2A1_VANPL (Uncharacterized protein n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835R2A1_VANPL)

HSP 1 Score: 48.9 bits (115), Expect = 8.910e-5
Identity = 22/50 (44.00%), Postives = 33/50 (66.00%), Query Frame = 1 
Query:  346 SHDGESDSSDDPGVRRSVITGKRIMMSLDRTKEDHARERGRKQLLQFMNA 495
            S  G      D GVRRS ++GK+I++ L+++KED   E  R +LL+F+NA
Sbjct:   30 SFQGRDKDDKDDGVRRSAVSGKKILLKLEKSKEDKKAENNRNELLKFLNA 79
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12067.1290.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KPL1_9PHAE1.870e-869.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZG69_9STRA1.060e-752.83Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6S9KA90_HETAK1.480e-769.05Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
K0S0A4_THAOC6.590e-657.78Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A835R2A1_VANPL8.910e-544.00Uncharacterized protein n=1 Tax=Vanilla planifolia... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12067contigS-dermatodea_contig12067:2916..3582 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-27_004100.1
Exons2
Model size504
Cds size504
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924229.847765-CDS-S-dermatodea_contig12067:2915..32651622924229.847765-CDS-S-dermatodea_contig12067:2915..3265Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12067 2916..3265 +
1694079110.2081356-CDS-S-dermatodea_contig12067:2915..32651694079110.2081356-CDS-S-dermatodea_contig12067:2915..3265Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12067 2916..3265 +
1622924229.8590496-CDS-S-dermatodea_contig12067:3428..35821622924229.8590496-CDS-S-dermatodea_contig12067:3428..3582Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12067 3429..3582 +
1694079110.2201629-CDS-S-dermatodea_contig12067:3428..35821694079110.2201629-CDS-S-dermatodea_contig12067:3428..3582Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12067 3429..3582 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12067.1290.1prot_S-dermatodea_contig12067.1290.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12067 2916..3582 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12067.1290.1

>prot_S-dermatodea_contig12067.1290.1 ID=prot_S-dermatodea_contig12067.1290.1|Name=mRNA_S-dermatodea_contig12067.1290.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=168bp
SSSSEDESERVKRRGRSESPERRKRKKKKKKRGNSEGSRKEKRRAEDEHQ
EEKPKKRDRKGKKKKKEKRSRREKREKVRFVVIRSLRSLRSLNPMCFETS
RVRALCMKWRRIERYSHDGESDSSDDPGVRRSVITGKRIMMSLDRTKEDH
ARERGRKQLLQFMNAQI*
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mRNA from alignment at S-dermatodea_contig12067:2916..3582+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12067.1290.1 ID=mRNA_S-dermatodea_contig12067.1290.1|Name=mRNA_S-dermatodea_contig12067.1290.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=667bp|location=Sequence derived from alignment at S-dermatodea_contig12067:2916..3582+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TCTTCTTCCAGTGAAGATGAAAGTGAGAGGGTTAAGCGCCGCGGGCGAAG
CGAATCACCTGAGCGGCGAAAGCGAAAAAAGAAAAAAAAGAAACGGGGAA
ATTCAGAGGGATCGAGGAAGGAGAAGAGGAGGGCCGAGGACGAGCACCAG
GAGGAAAAACCGAAGAAAAGAGACAGAAAAGGAAAGAAAAAGAAAAAGGA
AAAGCGATCAAGACGGGAGAAGCGCGAAAAGGTTCGTTTTGTGGTAATAA
GGAGCCTAAGGAGCCTAAGGAGCCTAAACCCAATGTGTTTTGAGACCAGC
CGCGTGCGTGCGCTTTGCATGAAATGGCGCAGAATAGAGCGGTACTCTCA
GTGAAAACTGGTTGCTGCGCTGGTGGATCGGGGCTTGAGAGTGCACCGGT
TTTTGTCTTTGATATACTGTACATGCTCCCTCGCCCCGGCAAACGCTACA
CGGTGCGAAATCGCTGCTGTTCTGATGTGATTTTCCCCGTTTAAAAAAAC
TACAGTCGGAGAGCGACGGGGAATCCGACAGTTCTGACGATCCTGGCGTC
CGGCGAAGTGTCATCACCGGCAAGCGCATCATGATGAGCCTGGACCGCAC
AAAGGAAGACCATGCTCGGGAACGTGGCCGGAAGCAGCTGCTTCAATTCA
TGAATGCGCAAATCTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig12067:2916..3582+

>mRNA_S-dermatodea_contig12067.1290.1 ID=mRNA_S-dermatodea_contig12067.1290.1|Name=mRNA_S-dermatodea_contig12067.1290.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1008bp|location=Sequence derived from alignment at S-dermatodea_contig12067:2916..3582+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TCTTCTTCCAGTGAAGATGAAAGTGAGAGGGTTAAGCGCCGCGGGCGAAG
CGAATCACCTGAGCGGCGAAAGCGAAAAAAGAAAAAAAAGAAACGGGGAA
ATTCAGAGGGATCGAGGAAGGAGAAGAGGAGGGCCGAGGACGAGCACCAG
GAGGAAAAACCGAAGAAAAGAGACAGAAAAGGAAAGAAAAAGAAAAAGGA
AAAGCGATCAAGACGGGAGAAGCGCGAAAAGGTTCGTTTTGTGGTAATAA
GGAGCCTAAGGAGCCTAAGGAGCCTAAACCCAATGTGTTTTGAGACCAGC
CGCGTGCGTGCGCTTTGCATGAAATGGCGCAGAATAGAGCGGTACTCTCA
TCTTCTTCCAGTGAAGATGAAAGTGAGAGGGTTAAGCGCCGCGGGCGAAG
CGAATCACCTGAGCGGCGAAAGCGAAAAAAGAAAAAAAAGAAACGGGGAA
ATTCAGAGGGATCGAGGAAGGAGAAGAGGAGGGCCGAGGACGAGCACCAG
GAGGAAAAACCGAAGAAAAGAGACAGAAAAGGAAAGAAAAAGAAAAAGGA
AAAGCGATCAAGACGGGAGAAGCGCGAAAAGGTTCGTTTTGTGGTAATAA
GGAGCCTAAGGAGCCTAAGGAGCCTAAACCCAATGTGTTTTGAGACCAGC
CGCGTGCGTGCGCTTTGCATGAAATGGCGCAGAATAGAGCGGTACTCTCA
CGACGGGGAATCCGACAGTTCTGACGATCCTGGCGTCCGGCGAAGTGTCA
TCACCGGCAAGCGCATCATGATGAGCCTGGACCGCACAAAGGAAGACCAT
GCTCGGGAACGTGGCCGGAAGCAGCTGCTTCAATTCATGAATGCGCAAAT
CTGACGACGGGGAATCCGACAGTTCTGACGATCCTGGCGTCCGGCGAAGT
GTCATCACCGGCAAGCGCATCATGATGAGCCTGGACCGCACAAAGGAAGA
CCATGCTCGGGAACGTGGCCGGAAGCAGCTGCTTCAATTCATGAATGCGC
AAATCTGA
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