mRNA_S-dermatodea_contig12066.1289.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12066.1289.1
Unique NamemRNA_S-dermatodea_contig12066.1289.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig12066.1289.1 vs. uniprot
Match: D7FII0_ECTSI (Ankyrin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FII0_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 5.820e-19
Identity = 45/67 (67.16%), Postives = 51/67 (76.12%), Query Frame = 1 
Query:    1 HRRISTP-LDGVCFTLLGVSTGLKTPGVDHWSVASALVESSVDLRTRNAKGMTPLHLACAAGQVDVA 198
            HRR STP LDG   TLLGVS  L TP  D+W VA AL+ES+ DLRTRN +GMTPLHLAC+ G+VD A
Sbjct:  114 HRRTSTPPLDGARLTLLGVSKALNTPVQDNWEVARALLESNTDLRTRNDRGMTPLHLACSTGEVDAA 180
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12066.1289.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FII0_ECTSI5.820e-1967.16Ankyrin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FII0... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12066contigS-dermatodea_contig12066:5089..6563 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score91.3
Seed ortholog evalue3.2e-16
Seed eggNOG ortholog2880.D7FII0
KEGG koko:K15503
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009,ko03400
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-28_000350.1
Exons2
Model size348
Cds size345
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924229.79089-CDS-S-dermatodea_contig12066:5088..52741622924229.79089-CDS-S-dermatodea_contig12066:5088..5274Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12066 5089..5274 +
1694079110.182817-CDS-S-dermatodea_contig12066:5088..52741694079110.182817-CDS-S-dermatodea_contig12066:5088..5274Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12066 5089..5274 +
1622924229.8090544-CDS-S-dermatodea_contig12066:6402..65611622924229.8090544-CDS-S-dermatodea_contig12066:6402..6561Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12066 6403..6561 +
1694079110.193165-CDS-S-dermatodea_contig12066:6402..65611694079110.193165-CDS-S-dermatodea_contig12066:6402..6561Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12066 6403..6561 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12066.1289.1prot_S-dermatodea_contig12066.1289.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12066 5089..6561 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12066.1289.1

>prot_S-dermatodea_contig12066.1289.1 ID=prot_S-dermatodea_contig12066.1289.1|Name=mRNA_S-dermatodea_contig12066.1289.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=115bp
HRRISTPLDGVCFTLLGVSTGLKTPGVDHWSVASALVESSVDLRTRNAKG
MTPLHLACAAGQVDVAKVLLLAGADPHARDHRSRCPLHMAALAGNEELAK
ALLTCGADPSKASDL
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mRNA from alignment at S-dermatodea_contig12066:5089..6563+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12066.1289.1 ID=mRNA_S-dermatodea_contig12066.1289.1|Name=mRNA_S-dermatodea_contig12066.1289.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1475bp|location=Sequence derived from alignment at S-dermatodea_contig12066:5089..6563+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CACCGTCGCATATCTACCCCGCTGGATGGCGTGTGCTTCACGCTGCTAGG
CGTGTCCACTGGGCTCAAGACCCCCGGTGTGGATCACTGGTCTGTTGCAA
GCGCCTTGGTGGAGTCCTCCGTCGATCTGCGCACGAGGAATGCTAAGGGA
ATGACACCACTGCACCTTGCCTGCGCGGCCGGCCAGGTGAGAAGATACTA
CGCATTGCTATAGTATAACCGTAGAGAGTTGTTGTATCAATAGCTCTACT
GTACTGCTGCACTTGTAGGCTCTACGACATACAGAGTACAAGTTAATACC
AGATACATCCATTGTATGATACCGTTCTTCTACTTGGATTGATTGATTGA
TTTAATATTAGTACTACTTGTACGAAGCATAATATTAGAGCTCTATATTA
TATATTACAGTCTTGCTTTGGATGTATTCAAGTGTATGATACGATATGAC
GCATGCGTTCGATATTTGTATACTTGTACTGCTCTATAATACTATTAATT
AATGCTGTATAATATGATACTATGATATTGTACCATACAATACACACTTT
CTCCGTTCTGTTTTTCTTCATTACAAACAAAGCGTGCGAATTTGATGGTC
TTTGTGCAAATGTAAATGTATGCATAGTCAAGAGGGAAAGAGCTCACCGC
AACTATTTTATGATACATGTAAATACTTGGTACAAAGATATGTGTAGCCT
CTCGTGTGCGGGCGAACATATTTTTTTGTGGGTCGGGAACTTTTTTTGTG
GGCCGTGGAGCTTAATCTTAATTACTTGTTCTGCAGTAATTGTCAGTAAT
TGTCTTTAATGAATAATATGGTTAATTATGCCGAGGCCTTTGCTACCGTT
ACGCAACAATACGGGTTGTGCACGGGCGCGTACGCGCATGGTTGGTATAG
AAAGGCTTGCTGTTGATATGCCACACACAGAACAGCCACACAAAGAACAA
GCAGTATCACATAAAATATATCATAGCGCAGACAAGAGTCGACAGCAGGT
GTGATGCCATAGACTTTATAAATAGTACTGTAGTACACTGTAGTACAACA
ACTAGGATCACATGACACCAGTCACATCTCCAGAAACAATACTATATTAT
ACAGTAGTACAGTATAAGTATGTATACGTAGCATGGAAGGGACGACAGCA
TCCAGCCCAAACTACAAATATTAATAGGCTTGTTTCACCTCATGAATGAA
CATCTTACGTAAATAACTTACAGAAGTATTAATAGGCATTGAAAATTGAC
CGAAACGGATACCCCCCGATGACGGTTGTATATTGTATTTTGTGTATGTC
GGCCCTTCCGACAGGTCGATGTGGCGAAGGTTTTGCTTCTCGCAGGCGCG
GACCCTCACGCGCGAGACCATCGATCGAGGTGCCCCTTGCACATGGCGGC
TCTGGCGGGCAACGAGGAACTAGCGAAGGCGCTGCTGACGTGCGGAGCAG
ACCCAAGCAAGGCCTCCGACCTGGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig12066:5089..6563+

>mRNA_S-dermatodea_contig12066.1289.1 ID=mRNA_S-dermatodea_contig12066.1289.1|Name=mRNA_S-dermatodea_contig12066.1289.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=690bp|location=Sequence derived from alignment at S-dermatodea_contig12066:5089..6563+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CACCGTCGCATATCTACCCCGCTGGATGGCGTGTGCTTCACGCTGCTAGG
CGTGTCCACTGGGCTCAAGACCCCCGGTGTGGATCACTGGTCTGTTGCAA
GCGCCTTGGTGGAGTCCTCCGTCGATCTGCGCACGAGGAATGCTAAGGGA
ATGACACCACTGCACCTTGCCTGCGCGGCCGGCCAGCACCGTCGCATATC
TACCCCGCTGGATGGCGTGTGCTTCACGCTGCTAGGCGTGTCCACTGGGC
TCAAGACCCCCGGTGTGGATCACTGGTCTGTTGCAAGCGCCTTGGTGGAG
TCCTCCGTCGATCTGCGCACGAGGAATGCTAAGGGAATGACACCACTGCA
CCTTGCCTGCGCGGCCGGCCAGGTCGATGTGGCGAAGGTTTTGCTTCTCG
CAGGCGCGGACCCTCACGCGCGAGACCATCGATCGAGGTGCCCCTTGCAC
ATGGCGGCTCTGGCGGGCAACGAGGAACTAGCGAAGGCGCTGCTGACGTG
CGGAGCAGACCCAAGCAAGGCCTCCGACCTGGTCGATGTGGCGAAGGTTT
TGCTTCTCGCAGGCGCGGACCCTCACGCGCGAGACCATCGATCGAGGTGC
CCCTTGCACATGGCGGCTCTGGCGGGCAACGAGGAACTAGCGAAGGCGCT
GCTGACGTGCGGAGCAGACCCAAGCAAGGCCTCCGACCTG
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