mRNA_S-dermatodea_contig12065.1288.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12065.1288.1
Unique NamemRNA_S-dermatodea_contig12065.1288.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12065.1288.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12065contigS-dermatodea_contig12065:3777..5879 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size360
Cds size360
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924229.6564035-CDS-S-dermatodea_contig12065:3776..40951622924229.6564035-CDS-S-dermatodea_contig12065:3776..4095Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12065 3777..4095 +
1694079110.1166594-CDS-S-dermatodea_contig12065:3776..40951694079110.1166594-CDS-S-dermatodea_contig12065:3776..4095Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12065 3777..4095 +
1622924229.6756473-CDS-S-dermatodea_contig12065:5838..58791622924229.6756473-CDS-S-dermatodea_contig12065:5838..5879Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12065 5839..5879 +
1694079110.1279786-CDS-S-dermatodea_contig12065:5838..58791694079110.1279786-CDS-S-dermatodea_contig12065:5838..5879Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12065 5839..5879 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12065.1288.1prot_S-dermatodea_contig12065.1288.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12065 3777..5879 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12065.1288.1

>prot_S-dermatodea_contig12065.1288.1 ID=prot_S-dermatodea_contig12065.1288.1|Name=mRNA_S-dermatodea_contig12065.1288.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=120bp
DLVVAVVTQARFGGGCLNSILVGGVYLNQVVPPRRRAGALFTSTPHLYDL
GGAIILVYHLSSSYHIQYHTQILSVLHDCGLVTHTARTQAEAPTDTGGAT
NAALNEAAAPPPATLEKRSH
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mRNA from alignment at S-dermatodea_contig12065:3777..5879+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12065.1288.1 ID=mRNA_S-dermatodea_contig12065.1288.1|Name=mRNA_S-dermatodea_contig12065.1288.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2103bp|location=Sequence derived from alignment at S-dermatodea_contig12065:3777..5879+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GACTTGGTCGTTGCTGTGGTTACTCAAGCTCGATTCGGCGGTGGCTGTTT
GAACAGCATCCTGGTGGGAGGGGTATATCTCAACCAAGTGGTGCCCCCGC
GACGGCGAGCCGGAGCACTCTTCACATCTACGCCACATCTCTACGATCTC
GGAGGAGCTATCATACTTGTATACCATCTCAGCTCATCATACCATATACA
GTATCATACCCAAATCTTGTCTGTATTGCACGACTGCGGACTGGTAACGC
ACACAGCGCGCACCCAAGCAGAGGCACCCACGGACACGGGTGGAGCTACG
AATGCCGCCCTCAATGAAGGTGAGGGCTTAAAGCACTGCTTGCCTTCCGA
GATGCTGCTTTAGTAGGAGAGACCGTGGCTTCGTGGCCCAGGACACTGAC
TCTGGGAAGCAATGGGTTGACCTTGAGTTGTACCTATAGAGCTCTATATT
GGACAGCAGTGAATGTCGAGATTCGAAGCGTGTGCTGGGTGGGCGAGTCG
TCATCGAGGCAGACGACTCGAAGTTCTGGCTCGTAACATGTGTGATGGAA
CAGGTGCCGTGGTATGGGGCCTTGCTTTGAGTTGCGTGGTGCTCCCTTCG
ACCCACCTGGCAAGCTTCGTAGTGATACGGTTTGTCGCTGCGTGTTACTG
ACTACTGTTTGCACTGCTGTCCAGGTAGACACGTAAAGACTATTATATCA
CTACGTACAGACAGACAGAGCAAACAGAGCGTACTTGAATATGTAAGACA
CGTCATCGTGCCGTATGGGACCCGATTGCCCGAATGACCTCATCGTCATG
GCATGCATGCCAAGCAAGGAGGGGAAAGCTTACTGCCGCACATCTGCAGG
AGATCTACTGTCAGTAGTAGCTAGCAGTGCAGCGTGCACACACAGTGTGT
ATCATCACAAGCTCAAAAACTGATGTTGTCAGGTTGTTGATGATCCTGAG
GATTGATGATAATGCTGTAGCTTTATTCTTTTGTTATTTACACTTGAAGC
TCTACACGATTACACACATCACACTGAACAAGGTCTGTGTACTCTATATA
CATACCTCAAATACCAAATATCCCAGGTACCTTATTATGAGTCAATCGGG
TACTGTACCTTATTGGAGGTTGTCGAGCTTAGCGGTGTTGAACGTTTACG
TAGCACGCATGACCTGTTGGGACTGAGCCTATTGTCGGGGCTAGGCCATA
ATTAGGTACAGAGTACCCGAACGGTGGCGGCTACTCCTCGGCGTAAAGGA
TGAAGGGACGTAAAAAGATGACCCAGTCAGGGTGCTACAAGCTCTACTGC
TGTAACCCTAACGAGGTTTGCGTTATTTGTACTGCCGTAAGTATTGCTGT
ATCCCCGTCTGTAGGTGGCCGACTGCGGTACTCGGAGTACAGGCACGCGG
TCGCTGGGGAATGTCCAAGATTGTGTCCTCCTTCGTCTCAGAAAACAAAA
AGAAACGCAGAGAAAACGAACAAAAAAGCAAACCGAGATAAACGAACGCC
CATATTATGTACCAGATATATACGACTGTACGGTAGTCAGTATACAAGCA
TGCTGGATGTGTTGCCGCGCGGCCCAGAACAATAAGCTGCCGTATACGAG
TCTCCAACCTACGAACATATGTCGGTCACCCGGCATGCCTGCCCGATCAA
CCCGTGGCATATATGCAAGTACAGCAGTATCCGGGTTGACTTTGCAGACT
TGAGGGTGATGACTCTAATAGCAGCTGGTATGATGTGAAACGCAAGGCTG
GCCGGCGAAACCCCGGCATATGGATCCGTTCCCTTCCGCCATTTTGTTGG
GATGTGTGGTCTCATGTCCGTTTAGATTTGAACTACGTTAAACAAAAGTG
CTGGTACACAAGAACCCCCCCAGTGTACATGGCTGAACTGGGGATACACA
ACACAACACCGCACCACACCACACCACACCACACCACACCACACCACACC
ACACCCACGCCTTCCCGAGCACCAACCCACCCCCAACCCAAAGCTAACCC
ACGCCACCCCTCGTCCTGTCTGGCGTTATTTTGCTGTTGGCACTGTTACC
CGCGCGCTCCAGCCGCGGCACCCCCGCCGGCGACGCTTGAGAAGAGGAGC
CAT
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Coding sequence (CDS) from alignment at S-dermatodea_contig12065:3777..5879+

>mRNA_S-dermatodea_contig12065.1288.1 ID=mRNA_S-dermatodea_contig12065.1288.1|Name=mRNA_S-dermatodea_contig12065.1288.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=720bp|location=Sequence derived from alignment at S-dermatodea_contig12065:3777..5879+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GACTTGGTCGTTGCTGTGGTTACTCAAGCTCGATTCGGCGGTGGCTGTTT
GAACAGCATCCTGGTGGGAGGGGTATATCTCAACCAAGTGGTGCCCCCGC
GACGGCGAGCCGGAGCACTCTTCACATCTACGCCACATCTCTACGATCTC
GGAGGAGCTATCATACTTGTATACCATCTCAGCTCATCATACCATATACA
GTATCATACCCAAATCTTGTCTGTATTGCACGACTGCGGACTGGTAACGC
ACACAGCGCGCACCCAAGCAGAGGCACCCACGGACACGGGTGGAGCTACG
AATGCCGCCCTCAATGAAGGACTTGGTCGTTGCTGTGGTTACTCAAGCTC
GATTCGGCGGTGGCTGTTTGAACAGCATCCTGGTGGGAGGGGTATATCTC
AACCAAGTGGTGCCCCCGCGACGGCGAGCCGGAGCACTCTTCACATCTAC
GCCACATCTCTACGATCTCGGAGGAGCTATCATACTTGTATACCATCTCA
GCTCATCATACCATATACAGTATCATACCCAAATCTTGTCTGTATTGCAC
GACTGCGGACTGGTAACGCACACAGCGCGCACCCAAGCAGAGGCACCCAC
GGACACGGGTGGAGCTACGAATGCCGCCCTCAATGAAGCCGCGGCACCCC
CGCCGGCGACGCTTGAGAAGAGGAGCCATCCGCGGCACCCCCGCCGGCGA
CGCTTGAGAAGAGGAGCCAT
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