mRNA_S-dermatodea_contig12063.1286.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12063.1286.1
Unique NamemRNA_S-dermatodea_contig12063.1286.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig12063.1286.1 vs. uniprot
Match: A0A6H5KI22_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI22_9PHAE)

HSP 1 Score: 153 bits (386), Expect = 4.610e-42
Identity = 71/84 (84.52%), Postives = 77/84 (91.67%), Query Frame = 1 
Query:    1 MAYHPTNMTISLLPAISEDGKELHWYHQAASASYVMGLDQAYWTAASYMGETTGAFFSYAVEFSLDYHQKHPRYQPFSVYEDYP 252
            +AYHPTNMTISLLP ISEDG+EL W HQAAS SYVMG++QAYW A SYMGETTGAFFSYAVEFSL+YH+ HPRYQPFSVYEDYP
Sbjct:   85 IAYHPTNMTISLLPVISEDGRELRWDHQAASVSYVMGVEQAYWNAGSYMGETTGAFFSYAVEFSLEYHRLHPRYQPFSVYEDYP 168
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BLAST of mRNA_S-dermatodea_contig12063.1286.1 vs. uniprot
Match: D7FTM5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTM5_ECTSI)

HSP 1 Score: 152 bits (385), Expect = 1.620e-41
Identity = 71/84 (84.52%), Postives = 77/84 (91.67%), Query Frame = 1 
Query:    1 MAYHPTNMTISLLPAISEDGKELHWYHQAASASYVMGLDQAYWTAASYMGETTGAFFSYAVEFSLDYHQKHPRYQPFSVYEDYP 252
            +AYHPTNMTISLLP ISEDG+EL W HQAAS SYVMG+DQAYW A SYMGETTGAFFSYAVEFSL++H+ HPRYQPFSVYEDYP
Sbjct:   85 IAYHPTNMTISLLPVISEDGRELRWDHQAASVSYVMGVDQAYWNAGSYMGETTGAFFSYAVEFSLEHHRLHPRYQPFSVYEDYP 168
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12063.1286.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KI22_9PHAE4.610e-4284.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTM5_ECTSI1.620e-4184.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12063contigS-dermatodea_contig12063:3948..5512 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-06_008850.1
Exons2
Model size254
Cds size252
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924229.608965-CDS-S-dermatodea_contig12063:3947..40791622924229.608965-CDS-S-dermatodea_contig12063:3947..4079Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12063 3948..4079 -
1694079110.0962965-CDS-S-dermatodea_contig12063:3947..40791694079110.0962965-CDS-S-dermatodea_contig12063:3947..4079Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12063 3948..4079 -
1622924229.622248-CDS-S-dermatodea_contig12063:5392..55121622924229.622248-CDS-S-dermatodea_contig12063:5392..5512Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12063 5393..5512 -
1694079110.1082208-CDS-S-dermatodea_contig12063:5392..55121694079110.1082208-CDS-S-dermatodea_contig12063:5392..5512Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12063 5393..5512 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12063.1286.1prot_S-dermatodea_contig12063.1286.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12063 3948..5512 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12063.1286.1

>prot_S-dermatodea_contig12063.1286.1 ID=prot_S-dermatodea_contig12063.1286.1|Name=mRNA_S-dermatodea_contig12063.1286.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=84bp
MAYHPTNMTISLLPAISEDGKELHWYHQAASASYVMGLDQAYWTAASYMG
ETTGAFFSYAVEFSLDYHQKHPRYQPFSVYEDYP
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mRNA from alignment at S-dermatodea_contig12063:3948..5512-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12063.1286.1 ID=mRNA_S-dermatodea_contig12063.1286.1|Name=mRNA_S-dermatodea_contig12063.1286.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1565bp|location=Sequence derived from alignment at S-dermatodea_contig12063:3948..5512- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCCTACCACCCCACGAACATGACGATATCTTTGCTGCCGGCCATATC
CGAGGACGGGAAGGAGCTGCACTGGTACCACCAGGCGGCGTCCGCCAGCT
ACGTCATGGGTCTTGACCAGGTGTGTCAACACAGGCGGGGCCAGTGGACT
CTGGCGGGCTGTGCCTGTCCGTATATTCGTAGTCCCGGCTTTGGGGTTGA
TCGGACAGCGGTCCAGCAAAGAGAGAGAGAAACGGCATACAATCGTCGTC
AAGAGCATCTCGAGAAAGGGTGGGAACCACCCAAGCAGGCCCGCAAGTCA
CACGCTCCGCGCGCAGCTAAAATGAGTCATAACTGCCCGATCGGTTCGAG
GACCAGTCGCAGCTACAATACTGACTGTTGTACTACTGTGTAACCCGAAG
TGCCGGTTCGCATGTAACTGCCATTAGCCAGGCCGGCAGCCCCCTCCATA
CTTTGGAAAAAGACCCCTAAAAAAACCTTTAGGGGAATTTTTCCAAAGCC
TCCGTGCGAGGACCTAACCACCAACATGAACAGCAGCGGTGCCGCTTTGC
ACTCACCGTGTGTCGGAACAGAAGGGGGGGCAGTTATTTGTACGGCTGGT
ATGGTGTACATATTAATATCATATTGCTTTCTTCGAAACCGACGTTGAAG
AGCGGTGTTGAAAAAACGGCATCTGGGTGCGCATGGGAAGTCGTTTCTGC
CGTGCTCCGGTGCCAGCGGCAGGGAGTTTTTGGCTTGGTGCTCCCGATGA
AACAGCACACGCGCAGGCAGCTCTTGCGCCCGTTAGCTCCGTACAGTAGC
GGGCCAGGCATCTCGCGATCGCCCTTCTCGATCGCGTATCCTCCGTGATC
AGTATATGTACGTTTGTGACGGAGATGAAGACTTCGTATTTTGTTTGTTT
TTTGTGTTGAGCTCTGCGAGTGTTTCCGTTGTAGAGCCCTTGTAACGGTT
GTATTGAGCGTATGATTTGTGTTTTGCTATGCTTTCCCTTGAGTTCGTTG
ATGAATGTTGTGACTTCGACCACGAGCTGGATTTTGAGATTGACCGGTTG
TATGCTAGCGTGAAACCGTCATCGCCATCATTATCATCATCGTTGCCATC
ACCATCACCATCACCATCACCATCATCAAATCGTCATCATCATCGTCATC
ATCATCATCATCGTCATCACCACCTCGCCACGGGAAGCGCATCCGCACAC
GAGGAATGCAAACACCCAACACGGCTGCGCCACCACTTACTTATTGATTC
GGTTGCATCCATGAAACGTCCGACAGCAGCACGTGGCATAATGCCTCCAT
CCATGCTAAAAACTTCCGGTTTCGGTCCTCCGCAAGGCTTGTGCTTTGGT
GGCTTGCTCGCTTGCTCGCTCGCTCGCTCGCGCGATTTTCACCTCGCATG
TCTCCGTCACGTTGATGTACTGTATTTGGCAAGGCGTACTGGACGGCGGC
ATCGTACATGGGAGAGACGACCGGCGCTTTTTTCAGCTACGCGGTCGAGT
TCAGCCTCGACTATCACCAGAAGCACCCCCGATATCAACCCTTCAGCGTC
TACGAGGATTATCCC
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Coding sequence (CDS) from alignment at S-dermatodea_contig12063:3948..5512-

>mRNA_S-dermatodea_contig12063.1286.1 ID=mRNA_S-dermatodea_contig12063.1286.1|Name=mRNA_S-dermatodea_contig12063.1286.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=504bp|location=Sequence derived from alignment at S-dermatodea_contig12063:3948..5512- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCCTACCACCCCACGAACATGACGATATCTTTGCTGCCGGCCATATC
CGAGGACGGGAAGGAGCTGCACTGGTACCACCAGGCGGCGTCCGCCAGCT
ACGTCATGGGTCTTGACCAGATGGCCTACCACCCCACGAACATGACGATA
TCTTTGCTGCCGGCCATATCCGAGGACGGGAAGGAGCTGCACTGGTACCA
CCAGGCGGCGTCCGCCAGCTACGTCATGGGTCTTGACCAGGCGTACTGGA
CGGCGGCATCGTACATGGGAGAGACGACCGGCGCTTTTTTCAGCTACGCG
GTCGAGTTCAGCCTCGACTATCACCAGAAGCACCCCCGATATCAACCCTT
CAGCGTCTACGAGGATTATCCCGCGTACTGGACGGCGGCATCGTACATGG
GAGAGACGACCGGCGCTTTTTTCAGCTACGCGGTCGAGTTCAGCCTCGAC
TATCACCAGAAGCACCCCCGATATCAACCCTTCAGCGTCTACGAGGATTA
TCCC
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