mRNA_S-dermatodea_contig12050.1277.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12050.1277.1
Unique NamemRNA_S-dermatodea_contig12050.1277.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12050.1277.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12050contigS-dermatodea_contig12050:5704..6077 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size375
Cds size315
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924228.7923121-CDS-S-dermatodea_contig12050:5703..60181622924228.7923121-CDS-S-dermatodea_contig12050:5703..6018Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12050 5704..6018 +
1694079109.5370796-CDS-S-dermatodea_contig12050:5703..60181694079109.5370796-CDS-S-dermatodea_contig12050:5703..6018Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12050 5704..6018 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924228.8086183-UTR-S-dermatodea_contig12050:6018..60771622924228.8086183-UTR-S-dermatodea_contig12050:6018..6077Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12050 6019..6077 +
1694079109.547079-UTR-S-dermatodea_contig12050:6018..60771694079109.547079-UTR-S-dermatodea_contig12050:6018..6077Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12050 6019..6077 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12050.1277.1prot_S-dermatodea_contig12050.1277.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12050 5704..6018 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12050.1277.1

>prot_S-dermatodea_contig12050.1277.1 ID=prot_S-dermatodea_contig12050.1277.1|Name=mRNA_S-dermatodea_contig12050.1277.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=105bp
ECSFASNYLCGTVGNCRDDLSAARWAVFVIILRSASVEQQHPTGLVFLFR
SGAASKGIHNVLVVDTLFCSPCRYCCICFLEQGSRCVLFFELPRRKSGRF
FTGW*
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mRNA from alignment at S-dermatodea_contig12050:5704..6077+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12050.1277.1 ID=mRNA_S-dermatodea_contig12050.1277.1|Name=mRNA_S-dermatodea_contig12050.1277.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=374bp|location=Sequence derived from alignment at S-dermatodea_contig12050:5704..6077+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GAATGTTCGTTCGCGTCAAATTACCTTTGTGGGACGGTTGGAAATTGTCG
CGACGATCTGTCGGCCGCGCGGTGGGCTGTATTTGTAATTATCCTGCGAA
GCGCTTCGGTTGAGCAGCAGCACCCCACAGGCCTTGTTTTTCTTTTTCGC
TCTGGCGCGGCGTCGAAAGGTATACATAATGTGCTTGTTGTTGATACGTT
ATTTTGTAGTCCATGCAGGTACTGCTGTATTTGTTTCCTCGAGCAGGGGA
GCAGGTGTGTACTCTTTTTCGAGCTGCCACGACGCAAGTCGGGACGTTTT
TTCACTGGCTGGTGAAAACTCGGAAGAGTGCAGAAACACCACGGCCGTGT
CGTGTTTGTGCGGCCAAAGCGAAC
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Coding sequence (CDS) from alignment at S-dermatodea_contig12050:5704..6077+

>mRNA_S-dermatodea_contig12050.1277.1 ID=mRNA_S-dermatodea_contig12050.1277.1|Name=mRNA_S-dermatodea_contig12050.1277.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=630bp|location=Sequence derived from alignment at S-dermatodea_contig12050:5704..6077+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GAATGTTCGTTCGCGTCAAATTACCTTTGTGGGACGGTTGGAAATTGTCG
CGACGATCTGTCGGCCGCGCGGTGGGCTGTATTTGTAATTATCCTGCGAA
GCGCTTCGGTTGAGCAGCAGCACCCCACAGGCCTTGTTTTTCTTTTTCGC
TCTGGCGCGGCGTCGAAAGGTATACATAATGTGCTTGTTGTTGATACGTT
ATTTTGTAGTCCATGCAGGTACTGCTGTATTTGTTTCCTCGAGCAGGGGA
GCAGGTGTGTACTCTTTTTCGAGCTGCCACGACGCAAGTCGGGACGTTTT
TTCACTGGCTGGTGAGAATGTTCGTTCGCGTCAAATTACCTTTGTGGGAC
GGTTGGAAATTGTCGCGACGATCTGTCGGCCGCGCGGTGGGCTGTATTTG
TAATTATCCTGCGAAGCGCTTCGGTTGAGCAGCAGCACCCCACAGGCCTT
GTTTTTCTTTTTCGCTCTGGCGCGGCGTCGAAAGGTATACATAATGTGCT
TGTTGTTGATACGTTATTTTGTAGTCCATGCAGGTACTGCTGTATTTGTT
TCCTCGAGCAGGGGAGCAGGTGTGTACTCTTTTTCGAGCTGCCACGACGC
AAGTCGGGACGTTTTTTCACTGGCTGGTGA
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