mRNA_S-dermatodea_contig12050.1276.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12050.1276.1
Unique NamemRNA_S-dermatodea_contig12050.1276.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig12050.1276.1 vs. uniprot
Match: A0A6H5J8Z2_9PHAE (Lipase_3 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J8Z2_9PHAE)

HSP 1 Score: 183 bits (465), Expect = 1.680e-53
Identity = 88/159 (55.35%), Postives = 111/159 (69.81%), Query Frame = 1
Query:    1 PSAEVLITGHSLGGALATLCFLDLKATLG------AKASFSPLYIFGAPRVGNAAFAAYTSSLGLPIFRVVHYRDPVPHLPFEAWGYNHPGREVFFDATQTSHVVCDESGEDPTCSNQFWFLPDMFYVRDHLAYLEVDYTKAYVQCLLGREEGAEAVVA 459
            P  ++LITGHSLG ALA LCFLDL+   G      +  SF+PLY+FG+PRVGN AFA  T+  G+ IFR+VH+RDPVPHLP EAWGY+HP  EVF+   Q+S+ VC++SGED TCSNQFW +     + DHL YL V+Y+ AY+QC L  E   +   A
Sbjct:  217 PHVQILITGHSLGAALAVLCFLDLRVNRGLGQGPNSSVSFAPLYLFGSPRVGNEAFATLTTRPGVSIFRLVHHRDPVPHLPLEAWGYHHPPTEVFYTEDQSSYQVCNKSGEDDTCSNQFWAI--FGNIEDHLWYLVVNYSTAYMQCQLDGESRTDREAA 373          
BLAST of mRNA_S-dermatodea_contig12050.1276.1 vs. uniprot
Match: A0A4D9D459_9STRA (Lipase_3 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D459_9STRA)

HSP 1 Score: 123 bits (308), Expect = 1.230e-31
Identity = 65/135 (48.15%), Postives = 88/135 (65.19%), Query Frame = 1
Query:    1 PSAEVLITGHSLGGALATLCFLDLKATLGAKASFSPLYIFGAPRVGNAAFAAYTSSLG----LPIFRVVHYRDPVPHLPFEAWGYNHPGREVFFDATQTSHVVCDESGEDPTCSNQFWFLPDMFYVRDHLAYLEV 393
            P A + +TGHSLG A+A  C +DL +      +   +  FG PRVGN  FA + +SL      P++R+VH RDPVPHLP  A+G++H   EVF++  QTS++VC++SGEDP CS+QF  L D+  V DHL YL V
Sbjct:  103 PDAPIWVTGHSLGAAIAVHCMVDLMSL---SYNVRRVVNFGQPRVGNKQFATFVASLAESLDFPLYRLVHNRDPVPHLPPRAFGFHHQPFEVFYNEDQTSYIVCNDSGEDPQCSDQF--LVDLD-VADHLNYLGV 231          
BLAST of mRNA_S-dermatodea_contig12050.1276.1 vs. uniprot
Match: A0A7S3C3K0_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3C3K0_9EUKA)

HSP 1 Score: 119 bits (299), Expect = 8.920e-31
Identity = 60/131 (45.80%), Postives = 82/131 (62.60%), Query Frame = 1
Query:    4 SAEVLITGHSLGGALATLCFLDLKAT---LGAKASFSPLYIFGAPRVGNAAFAAYTSSLGLPIFRVVHYRDPVPHLPFEAWGYNHPGREVFFDATQTSHVVCDESGEDPTCSNQFWFLPDMFYVRDHLAYL 387
            S ++ ITGHSLG A A LC  +L A+   LG       +Y +G PRVGN+AFA++        +R+ H+RDPVPH+P ++ G+ H G EVF+D    S+ VCD SGED +CSNQ+W       + DHL+YL
Sbjct:   54 SPKLFITGHSLGAAQAALCAAELGASSHSLGIPVD--AVYTYGQPRVGNSAFASFYMGGSRVSYRLTHHRDPVPHVPLQSMGFQHVGTEVFYDEDNDSYKVCDGSGEDSSCSNQYWAETS---ISDHLSYL 179          
BLAST of mRNA_S-dermatodea_contig12050.1276.1 vs. uniprot
Match: A0A7S3ASR7_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3ASR7_9EUKA)

HSP 1 Score: 118 bits (296), Expect = 1.090e-29
Identity = 69/146 (47.26%), Postives = 91/146 (62.33%), Query Frame = 1
Query:    1 PSAEVLITGHSLGGALATLCFLDLKATLGAKAS-FSPLYIFGAPRVGNAAFAAYTSSL--GLPIFRVVHYRDPVPHLPFEAWGYNHPGREVFF-DATQTSHVVCDESGEDPTCSNQFWFLPDMFYVRDHLAYLEVDYTKAYVQCLL 426
            P A + +TGHSLG A+A    +DL    GA A     +Y +G PRVGN+ FA++T+ L   +P+FRV H +DPVPHLP EA G+ H  REV++  A++ +H VCD SGEDPTCSN      D+  V DHL Y+  D    Y+ C L
Sbjct:  109 PRAPLWVTGHSLGAAVAYHAAVDLMQ--GAHAGRLRGVYTYGQPRVGNSNFASWTAQLLGAVPVFRVTHRQDPVPHLPLEAMGFAHVPREVYYAGASKGAHAVCDGSGEDPTCSNAH--AVDVNIV-DHLEYVGFDMVSNYLFCKL 249          
BLAST of mRNA_S-dermatodea_contig12050.1276.1 vs. uniprot
Match: W7U0K9_9STRA (Lipase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U0K9_9STRA)

HSP 1 Score: 120 bits (302), Expect = 1.310e-28
Identity = 64/135 (47.41%), Postives = 88/135 (65.19%), Query Frame = 1
Query:    1 PSAEVLITGHSLGGALATLCFLDLKATLGAKASFSPLYIFGAPRVGNAAFAAYTSSLG----LPIFRVVHYRDPVPHLPFEAWGYNHPGREVFFDATQTSHVVCDESGEDPTCSNQFWFLPDMFYVRDHLAYLEV 393
            P A + +TGHSLG A+A  C +DL +      +   +  FG PRVGN  FA + +SL      P++R+VH+RDPVPHLP  A+G++H   EVF++  QTS++VC++SGED  CS+QF  L D+  V DHL YL V
Sbjct:  447 PDAPIWVTGHSLGAAIAVHCMVDLMSL---SYNVRRVVNFGQPRVGNKQFATFVASLAESLDFPLYRLVHHRDPVPHLPPRAFGFHHQPFEVFYNEDQTSYIVCNDSGEDLQCSDQF--LVDLD-VADHLNYLGV 575          
BLAST of mRNA_S-dermatodea_contig12050.1276.1 vs. uniprot
Match: A0A5D6XT45_9STRA (Lipase_3 domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XT45_9STRA)

HSP 1 Score: 113 bits (283), Expect = 7.610e-27
Identity = 66/141 (46.81%), Postives = 83/141 (58.87%), Query Frame = 1
Query:    1 PSAEVLITGHSLGGALATLCFLDLKATLGAKASFSPLYIFGAPRVGNAAFAAYTSSLGLPIFRVVHYRDPVPHLPFEAWGYNHPGREVFFDATQTSHVVCDE-SGEDPTCSNQFWFLPDMFYVRDHLAYLEVDYTKAYVQC 420
            P A VL+TGHSLG A+A +C  +L   L  K   + LY FGAPR GNA F+A   +  L +FRV H+RD VPHLP    G+ H  REVF+D  Q+ + +C E SGED  CSN          V DHL YL V  T +++ C
Sbjct:  224 PGARVLVTGHSLGAAVAAICTFELA--LLEKIPVAALYTFGAPRAGNAEFSAALRNASLDVFRVTHFRDVVPHLPPTWIGFQHTTREVFYDEFQSDYRLCSEDSGEDMACSNACSPF-GCTSVVDHLTYLNV--TMSHLIC 359          
BLAST of mRNA_S-dermatodea_contig12050.1276.1 vs. uniprot
Match: A9V5U1_MONBE (Predicted protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9V5U1_MONBE)

HSP 1 Score: 111 bits (277), Expect = 1.320e-26
Identity = 64/133 (48.12%), Postives = 79/133 (59.40%), Query Frame = 1
Query:    1 PSAEVLITGHSLGGALATLCFLDLKATLGAKASFSPLYIFGAPRVGNAAFAAYTSSLGLPI-FRVVHYRDPVPHLPFEAWGYNHPGREVFFDAT---QTSHVVCDESGEDPTCSNQFWFLPDMFYVRDHLAYL 387
            P   +L+TGHSLG ALA +C LDL   +G   +    Y +G PRVGN AFA +  S  L   +R+ H  DPVPHLP E+ G+ H   EV++      Q+S  VCD SGEDP CSNQ W   D+  V DHL YL
Sbjct:  139 PEYTILVTGHSLGAALAAMCSLDLS--IGHPQARILHYTYGQPRVGNQAFAQFYESHNLAQHYRMTHNEDPVPHLPLESMGFYHISTEVYYGEKFEGQSSLKVCDGSGEDPNCSNQHW--TDL-KVSDHLNYL 266          
BLAST of mRNA_S-dermatodea_contig12050.1276.1 vs. uniprot
Match: S9TCM1_9TRYP (Triacylglycerol lipase n=1 Tax=Strigomonas culicis TaxID=28005 RepID=S9TCM1_9TRYP)

HSP 1 Score: 112 bits (280), Expect = 1.640e-26
Identity = 71/148 (47.97%), Postives = 84/148 (56.76%), Query Frame = 1
Query:    1 PSAEVLITGHSLGGALATLC---FLDLKATLGAKASFSP---LYIFGAPRVGNAAFAAYTSSLGLPI---FRVVHYRDPVPHLPFEAWGYNHPGREVFF--------DATQTSHVVCDESGEDPTCSNQFWFLPDMFYVRDHLAYLEV 393
            P+  VL+TGHSLGGALATLC    L L A LG  A+  P   LY FGAPRVGN AF  + +   LP    +RV H  D VPHLP ++WGY H  REV+F        DA        D + EDPTCS+  W       V DHL+YL+V
Sbjct:  164 PTYRVLVTGHSLGGALATLCAADLLQLYAVLGRGAARRPDVQLYTFGAPRVGNDAFVRWLAG-ALPAGGSYRVTHRSDAVPHLPPQSWGYVHLPREVWFTDGLEPPEDARGYRVCADDAAAEDPTCSDSTWATS----VADHLSYLDV 306          
BLAST of mRNA_S-dermatodea_contig12050.1276.1 vs. uniprot
Match: A0A485L7W4_9STRA (Aste57867_17435 protein n=2 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L7W4_9STRA)

HSP 1 Score: 111 bits (277), Expect = 1.810e-26
Identity = 62/141 (43.97%), Postives = 81/141 (57.45%), Query Frame = 1
Query:    1 PSAEVLITGHSLGGALATLCFLDLKATLGAKASFSPLYIFGAPRVGNAAFAAYTSSLGLPIFRVVHYRDPVPHLPFEAWGYNHPGREVFFDATQTSHVVCD-ESGEDPTCSNQFWFLPDMFYVRDHLAYLEVDYTKAYVQC 420
            P A +L+TGHSLG A+A +  +DL  T    A    L  FG PRVGNAAF A    +    FRV H+RD VP+LP E  GY H  +EV++ A   +  +CD   GEDPTC+ QFW   +     DH+ YL +  T ++ QC
Sbjct:  160 PHAPLLLTGHSLGAAVAAITAVDLHVTRNLTAQ--RLLTFGEPRVGNAAFVAQLLQVVPHPFRVTHWRDVVPNLPLEMQGYVHAPQEVWYSANSDAFKLCDPHDGEDPTCNKQFWMTGNPL---DHIVYLNL--TMSHTQC 293          
BLAST of mRNA_S-dermatodea_contig12050.1276.1 vs. uniprot
Match: A0A0M0JHL5_9EUKA (Lipase family protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JHL5_9EUKA)

HSP 1 Score: 110 bits (276), Expect = 2.000e-26
Identity = 55/131 (41.98%), Postives = 83/131 (63.36%), Query Frame = 1
Query:    4 SAEVLITGHSLGGALATLCFLDLKATLGAKA-SFSPLYIFGAPRVGNAAFAAYTSSLGLPIFRVVHYRDPVPHLPFEAWGYNHPGREVFFDATQTSHVVCDESGEDPTCSNQFWFLPDMFYVRDHLAYLEV 393
            SA + +TGHSLG A+A LC ++L A+  +     + +Y +G PRVGN  FA +  +     +RV H+RD VPHLP EA+G++H   EV++   Q ++ VCD SGEDPTC++Q +   +   + DHL Y+ +
Sbjct:  149 SANIFVTGHSLGAAVAALCAVELGASSQSLGFPIAGVYTYGEPRVGNDQFAKFYMTGTQVSWRVTHWRDIVPHLPPEAFGFHHTATEVWYTEDQKNYTVCDGSGEDPTCADQLF---EAVSIDDHLQYMGI 276          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12050.1276.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J8Z2_9PHAE1.680e-5355.35Lipase_3 domain-containing protein n=2 Tax=Ectocar... [more]
A0A4D9D459_9STRA1.230e-3148.15Lipase_3 domain-containing protein n=1 Tax=Nannoch... [more]
A0A7S3C3K0_9EUKA8.920e-3145.80Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A7S3ASR7_9EUKA1.090e-2947.26Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
W7U0K9_9STRA1.310e-2847.41Lipase n=1 Tax=Nannochloropsis gaditana TaxID=7252... [more]
A0A5D6XT45_9STRA7.610e-2746.81Lipase_3 domain-containing protein n=1 Tax=Pythium... [more]
A9V5U1_MONBE1.320e-2648.12Predicted protein n=1 Tax=Monosiga brevicollis Tax... [more]
S9TCM1_9TRYP1.640e-2647.97Triacylglycerol lipase n=1 Tax=Strigomonas culicis... [more]
A0A485L7W4_9STRA1.810e-2643.97Aste57867_17435 protein n=2 Tax=Aphanomyces stella... [more]
A0A0M0JHL5_9EUKA2.000e-2641.98Lipase family protein n=1 Tax=Chrysochromulina tob... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12050contigS-dermatodea_contig12050:5117..5659 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score183.0
Seed ortholog evalue1.1e-43
Seed eggNOG ortholog2880.D8LBM6
EggNOG free text desc.phospholipase A1 activity
EggNOG OGsKOG4569@1,KOG4569@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionLipase domain protein
Ec32 orthologEc-27_003400.1
Exons1
Model size543
Cds size471
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924228.838413-CDS-S-dermatodea_contig12050:5116..55871622924228.838413-CDS-S-dermatodea_contig12050:5116..5587Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12050 5117..5587 +
1694079109.5569546-CDS-S-dermatodea_contig12050:5116..55871694079109.5569546-CDS-S-dermatodea_contig12050:5116..5587Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12050 5117..5587 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924228.8527467-UTR-S-dermatodea_contig12050:5587..56591622924228.8527467-UTR-S-dermatodea_contig12050:5587..5659Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12050 5588..5659 +
1694079109.5682232-UTR-S-dermatodea_contig12050:5587..56591694079109.5682232-UTR-S-dermatodea_contig12050:5587..5659Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12050 5588..5659 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12050.1276.1prot_S-dermatodea_contig12050.1276.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12050 5117..5587 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12050.1276.1

>prot_S-dermatodea_contig12050.1276.1 ID=prot_S-dermatodea_contig12050.1276.1|Name=mRNA_S-dermatodea_contig12050.1276.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=157bp
PSAEVLITGHSLGGALATLCFLDLKATLGAKASFSPLYIFGAPRVGNAAF
AAYTSSLGLPIFRVVHYRDPVPHLPFEAWGYNHPGREVFFDATQTSHVVC
DESGEDPTCSNQFWFLPDMFYVRDHLAYLEVDYTKAYVQCLLGREEGAEA
VVAVER*
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mRNA from alignment at S-dermatodea_contig12050:5117..5659+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12050.1276.1 ID=mRNA_S-dermatodea_contig12050.1276.1|Name=mRNA_S-dermatodea_contig12050.1276.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=543bp|location=Sequence derived from alignment at S-dermatodea_contig12050:5117..5659+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCATCCGCGGAAGTGCTCATCACTGGGCACTCCCTGGGGGGGGCTCTGGC GACCTTGTGTTTCCTGGATCTCAAGGCGACGCTTGGCGCGAAGGCCTCCT TTTCTCCTCTATACATCTTCGGGGCGCCGCGGGTGGGCAACGCGGCTTTC GCGGCGTACACGTCATCGCTAGGCTTGCCCATCTTTCGGGTGGTGCACTA CCGCGACCCCGTCCCGCACCTCCCGTTCGAGGCCTGGGGTTACAATCACC CGGGGCGAGAGGTGTTCTTCGACGCTACCCAGACGAGCCACGTGGTTTGC GACGAGAGCGGGGAAGATCCGACTTGCTCGAATCAGTTCTGGTTCCTGCC GGACATGTTTTACGTTCGCGACCACTTGGCCTACCTCGAGGTGGACTACA CAAAGGCCTACGTTCAGTGTTTGCTGGGCAGAGAAGAGGGCGCGGAGGCG GTGGTAGCTGTTGAAAGGTAGAGGGTTTTGAAATTGCCGCGTCTGGGGGG GACGGGGTAGGTAGCTAGCCTTGTCCATATGTTTTTTGCTCCT
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Coding sequence (CDS) from alignment at S-dermatodea_contig12050:5117..5659+

>mRNA_S-dermatodea_contig12050.1276.1 ID=mRNA_S-dermatodea_contig12050.1276.1|Name=mRNA_S-dermatodea_contig12050.1276.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=942bp|location=Sequence derived from alignment at S-dermatodea_contig12050:5117..5659+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCATCCGCGGAAGTGCTCATCACTGGGCACTCCCTGGGGGGGGCTCTGGC
GACCTTGTGTTTCCTGGATCTCAAGGCGACGCTTGGCGCGAAGGCCTCCT
TTTCTCCTCTATACATCTTCGGGGCGCCGCGGGTGGGCAACGCGGCTTTC
GCGGCGTACACGTCATCGCTAGGCTTGCCCATCTTTCGGGTGGTGCACTA
CCGCGACCCCGTCCCGCACCTCCCGTTCGAGGCCTGGGGTTACAATCACC
CGGGGCGAGAGGTGTTCTTCGACGCTACCCAGACGAGCCACGTGGTTTGC
GACGAGAGCGGGGAAGATCCGACTTGCTCGAATCAGTTCTGGTTCCTGCC
GGACATGTTTTACGTTCGCGACCACTTGGCCTACCTCGAGGTGGACTACA
CAAAGGCCTACGTTCAGTGTTTGCTGGGCAGAGAAGAGGGCGCGGAGGCG
GTGGTAGCTGTTGAAAGGTAGCCATCCGCGGAAGTGCTCATCACTGGGCA
CTCCCTGGGGGGGGCTCTGGCGACCTTGTGTTTCCTGGATCTCAAGGCGA
CGCTTGGCGCGAAGGCCTCCTTTTCTCCTCTATACATCTTCGGGGCGCCG
CGGGTGGGCAACGCGGCTTTCGCGGCGTACACGTCATCGCTAGGCTTGCC
CATCTTTCGGGTGGTGCACTACCGCGACCCCGTCCCGCACCTCCCGTTCG
AGGCCTGGGGTTACAATCACCCGGGGCGAGAGGTGTTCTTCGACGCTACC
CAGACGAGCCACGTGGTTTGCGACGAGAGCGGGGAAGATCCGACTTGCTC
GAATCAGTTCTGGTTCCTGCCGGACATGTTTTACGTTCGCGACCACTTGG
CCTACCTCGAGGTGGACTACACAAAGGCCTACGTTCAGTGTTTGCTGGGC
AGAGAAGAGGGCGCGGAGGCGGTGGTAGCTGTTGAAAGGTAG
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