mRNA_S-dermatodea_contig12049.1274.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12049.1274.1
Unique NamemRNA_S-dermatodea_contig12049.1274.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig12049.1274.1 vs. uniprot
Match: D7G3G9_ECTSI (Bifunctional Aldehyde Dehydrogenase/Phosphoglucomutase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3G9_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 5.810e-17
Identity = 41/44 (93.18%), Postives = 43/44 (97.73%), Query Frame = 1 
Query:    1 ARVAQEAWALTTFAERRRVLSCLQRYILDHQDDIARVASRDSGK 132
            ARVAQE WALTTFAERRRVL+CLQRYILD+QDDIARVASRDSGK
Sbjct:  115 ARVAQEEWALTTFAERRRVLACLQRYILDNQDDIARVASRDSGK 158
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BLAST of mRNA_S-dermatodea_contig12049.1274.1 vs. uniprot
Match: A0A6H5KWG9_9PHAE (ALDH protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWG9_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 1.480e-16
Identity = 40/44 (90.91%), Postives = 43/44 (97.73%), Query Frame = 1 
Query:    1 ARVAQEAWALTTFAERRRVLSCLQRYILDHQDDIARVASRDSGK 132
            ARVAQE WALTTFAER+RVL+CLQRYILD+QDDIARVASRDSGK
Sbjct:  115 ARVAQEEWALTTFAERKRVLACLQRYILDNQDDIARVASRDSGK 158
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BLAST of mRNA_S-dermatodea_contig12049.1274.1 vs. uniprot
Match: A0A7S2XYE7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYE7_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 4.770e-10
Identity = 29/44 (65.91%), Postives = 37/44 (84.09%), Query Frame = 1 
Query:    1 ARVAQEAWALTTFAERRRVLSCLQRYILDHQDDIARVASRDSGK 132
            AR+AQ+ W  T+F+ERRRVL  +Q YIL+H++DI RVASRDSGK
Sbjct:  130 ARLAQQEWCKTSFSERRRVLQVVQEYILNHEEDICRVASRDSGK 173
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BLAST of mRNA_S-dermatodea_contig12049.1274.1 vs. uniprot
Match: A0A0C3HGI0_9PEZI (Aldedh domain-containing protein n=1 Tax=Oidiodendron maius Zn TaxID=913774 RepID=A0A0C3HGI0_9PEZI)

HSP 1 Score: 60.1 bits (144), Expect = 2.280e-9
Identity = 27/44 (61.36%), Postives = 37/44 (84.09%), Query Frame = 1 
Query:    1 ARVAQEAWALTTFAERRRVLSCLQRYILDHQDDIARVASRDSGK 132
            A+ AQE WALTTFA+RR+VL C++ ++L+HQ++I RVA  DSGK
Sbjct:  113 AKKAQEKWALTTFAQRRQVLRCIKTFVLEHQEEICRVACLDSGK 156
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BLAST of mRNA_S-dermatodea_contig12049.1274.1 vs. uniprot
Match: G3B194_CANTC (Aldedh-domain-containing protein n=1 Tax=Candida tenuis (strain ATCC 10573 / BCRC 21748 / CBS 615 / JCM 9827 / NBRC 10315 / NRRL Y-1498 / VKM Y-70) TaxID=590646 RepID=G3B194_CANTC)

HSP 1 Score: 59.7 bits (143), Expect = 3.120e-9
Identity = 29/44 (65.91%), Postives = 37/44 (84.09%), Query Frame = 1 
Query:    1 ARVAQEAWALTTFAERRRVLSCLQRYILDHQDDIARVASRDSGK 132
            A+VAQ+ WA ++F+ RR++L  L RYILDHQ+DIARVA RDSGK
Sbjct:  114 AKVAQKQWAKSSFSLRRKLLRTLNRYILDHQEDIARVACRDSGK 157
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BLAST of mRNA_S-dermatodea_contig12049.1274.1 vs. uniprot
Match: A0A0E9NMV2_SAICN (Aldedh domain-containing protein n=1 Tax=Saitoella complicata (strain BCRC 22490 / CBS 7301 / JCM 7358 / NBRC 10748 / NRRL Y-17804) TaxID=698492 RepID=A0A0E9NMV2_SAICN)

HSP 1 Score: 59.3 bits (142), Expect = 4.260e-9
Identity = 28/41 (68.29%), Postives = 37/41 (90.24%), Query Frame = 1 
Query:   10 AQEAWALTTFAERRRVLSCLQRYILDHQDDIARVASRDSGK 132
            AQ AWA T+FAERR+VL+ LQR++L++QD+IARVA RD+GK
Sbjct:  116 AQVAWAKTSFAERRKVLNTLQRFLLENQDEIARVACRDTGK 156
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BLAST of mRNA_S-dermatodea_contig12049.1274.1 vs. uniprot
Match: UPI000867AAFD (Aldedh-domain-containing protein n=1 Tax=Saitoella complicata (strain BCRC 22490 / CBS 7301 / JCM 7358 / NBRC 10748 / NRRL Y-17804) TaxID=698492 RepID=UPI000867AAFD)

HSP 1 Score: 59.3 bits (142), Expect = 4.260e-9
Identity = 28/41 (68.29%), Postives = 37/41 (90.24%), Query Frame = 1 
Query:   10 AQEAWALTTFAERRRVLSCLQRYILDHQDDIARVASRDSGK 132
            AQ AWA T+FAERR+VL+ LQR++L++QD+IARVA RD+GK
Sbjct:  116 AQVAWAKTSFAERRKVLNTLQRFLLENQDEIARVACRDTGK 156
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BLAST of mRNA_S-dermatodea_contig12049.1274.1 vs. uniprot
Match: B7FZZ1_PHATC (Aldehyde dehydrogenase n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FZZ1_PHATC)

HSP 1 Score: 58.9 bits (141), Expect = 5.830e-9
Identity = 28/44 (63.64%), Postives = 36/44 (81.82%), Query Frame = 1 
Query:    1 ARVAQEAWALTTFAERRRVLSCLQRYILDHQDDIARVASRDSGK 132
            A +AQ+ WA T+FA+RRRVL  +Q+YI+ H +DI RVASRDSGK
Sbjct:   31 ASIAQKEWARTSFAQRRRVLRTIQKYIVHHVEDICRVASRDSGK 74
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BLAST of mRNA_S-dermatodea_contig12049.1274.1 vs. uniprot
Match: A0A7R9UB35_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UB35_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 5.830e-9
Identity = 30/44 (68.18%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:    1 ARVAQEAWALTTFAERRRVLSCLQRYILDHQDDIARVASRDSGK 132
            A+ AQEAW  TTFAERRRVL  +Q+YI  H  +I RVASRDSGK
Sbjct:  116 AKKAQEAWVNTTFAERRRVLMTMQKYITGHVHEICRVASRDSGK 159
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BLAST of mRNA_S-dermatodea_contig12049.1274.1 vs. uniprot
Match: S7ZE40_PENO1 (Aldedh domain-containing protein n=2 Tax=Penicillium TaxID=5073 RepID=S7ZE40_PENO1)

HSP 1 Score: 58.2 bits (139), Expect = 1.090e-8
Identity = 28/44 (63.64%), Postives = 33/44 (75.00%), Query Frame = 1 
Query:    1 ARVAQEAWALTTFAERRRVLSCLQRYILDHQDDIARVASRDSGK 132
            A+VAQ+ WA TTFAERR+VL  L +Y+LDHQDDI      DSGK
Sbjct:  129 AKVAQQEWAKTTFAERRKVLRSLLKYVLDHQDDIVTACCLDSGK 172
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12049.1274.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3G9_ECTSI5.810e-1793.18Bifunctional Aldehyde Dehydrogenase/Phosphoglucomu... [more]
A0A6H5KWG9_9PHAE1.480e-1690.91ALDH protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A7S2XYE7_9STRA4.770e-1065.91Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A0C3HGI0_9PEZI2.280e-961.36Aldedh domain-containing protein n=1 Tax=Oidiodend... [more]
G3B194_CANTC3.120e-965.91Aldedh-domain-containing protein n=1 Tax=Candida t... [more]
A0A0E9NMV2_SAICN4.260e-968.29Aldedh domain-containing protein n=1 Tax=Saitoella... [more]
UPI000867AAFD4.260e-968.29Aldedh-domain-containing protein n=1 Tax=Saitoella... [more]
B7FZZ1_PHATC5.830e-963.64Aldehyde dehydrogenase n=1 Tax=Phaeodactylum trico... [more]
A0A7R9UB35_9STRA5.830e-968.18Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
S7ZE40_PENO11.090e-863.64Aldedh domain-containing protein n=2 Tax=Penicilli... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12049contigS-dermatodea_contig12049:6655..6786 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score83.6
Seed ortholog evalue2.6e-14
Seed eggNOG ortholog2880.D7G3G9
Preferred nameMSC7
KEGG rclassRC00047,RC00071,RC00080,RC00186,RC00218,RC00242,RC00816,RC01500
KEGG koko:K00128,ko:K10661
KEGG ReactionR00264,R00631,R00710,R00904,R01752,R01986,R02549,R02678,R02940,R02957,R03283,R03869,R04065,R04506,R04903,R05050,R05237,R05238,R05286,R06366,R08146
KEGG Pathwayko00010,ko00053,ko00071,ko00280,ko00310,ko00330,ko00340,ko00380,ko00410,ko00561,ko00620,ko00625,ko00903,ko00981,ko01100,ko01110,ko01120,ko01130,ko04141,map00010,map00053,map00071,map00280,map00310,map00330,map00340,map00380,map00410,map00561,map00620,map00625,map00903,map00981,map01100,map01110,map01120,map01130,map04141
KEGG ModuleM00135
GOsGO:0000003,GO:0000280,GO:0003674,GO:0003824,GO:0004029,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0006139,GO:0006259,GO:0006310,GO:0006725,GO:0006807,GO:0006996,GO:0007049,GO:0007127,GO:0007131,GO:0008150,GO:0008152,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0016043,GO:0016491,GO:0016620,GO:0016903,GO:0022402,GO:0022414,GO:0031224,GO:0034641,GO:0035825,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044425,GO:0044444,GO:0044464,GO:0046483,GO:0048285,GO:0051321,GO:0055114,GO:0061982,GO:0071704,GO:0071840,GO:0090304,GO:0140013,GO:1901360,GO:1903046
EggNOG free text desc.aldehyde dehydrogenase (NAD) activity
EggNOG OGsCOG1012@1,COG1109@1,KOG1220@2759,KOG2454@2759
EC1.2.1.3,2.3.2.27
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04121
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size132
Cds size132
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924228.6782832-CDS-S-dermatodea_contig12049:6654..67861622924228.6782832-CDS-S-dermatodea_contig12049:6654..6786Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12049 6655..6786 +
1694079109.4750917-CDS-S-dermatodea_contig12049:6654..67861694079109.4750917-CDS-S-dermatodea_contig12049:6654..6786Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12049 6655..6786 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12049.1274.1prot_S-dermatodea_contig12049.1274.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12049 6655..6786 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12049.1274.1

>prot_S-dermatodea_contig12049.1274.1 ID=prot_S-dermatodea_contig12049.1274.1|Name=mRNA_S-dermatodea_contig12049.1274.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=44bp
ARVAQEAWALTTFAERRRVLSCLQRYILDHQDDIARVASRDSGK
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mRNA from alignment at S-dermatodea_contig12049:6655..6786+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12049.1274.1 ID=mRNA_S-dermatodea_contig12049.1274.1|Name=mRNA_S-dermatodea_contig12049.1274.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=132bp|location=Sequence derived from alignment at S-dermatodea_contig12049:6655..6786+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCGAGGGTGGCACAAGAGGCATGGGCGCTGACGACGTTCGCGGAGCGAAG
GCGAGTGCTAAGCTGCCTGCAGAGGTACATCCTCGACCACCAGGATGATA
TCGCCAGGGTAGCTTCCAGGGACTCGGGAAAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig12049:6655..6786+

>mRNA_S-dermatodea_contig12049.1274.1 ID=mRNA_S-dermatodea_contig12049.1274.1|Name=mRNA_S-dermatodea_contig12049.1274.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=264bp|location=Sequence derived from alignment at S-dermatodea_contig12049:6655..6786+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCGAGGGTGGCACAAGAGGCATGGGCGCTGACGACGTTCGCGGAGCGAAG
GCGAGTGCTAAGCTGCCTGCAGAGGTACATCCTCGACCACCAGGATGATA
TCGCCAGGGTAGCTTCCAGGGACTCGGGAAAGGCGAGGGTGGCACAAGAG
GCATGGGCGCTGACGACGTTCGCGGAGCGAAGGCGAGTGCTAAGCTGCCT
GCAGAGGTACATCCTCGACCACCAGGATGATATCGCCAGGGTAGCTTCCA
GGGACTCGGGAAAG
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