mRNA_S-dermatodea_contig12047.1273.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12047.1273.1
Unique NamemRNA_S-dermatodea_contig12047.1273.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig12047.1273.1 vs. uniprot
Match: A0A6H5L8Z2_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8Z2_9PHAE)

HSP 1 Score: 179 bits (454), Expect = 3.970e-48
Identity = 129/267 (48.31%), Postives = 153/267 (57.30%), Query Frame = 1 
Query:  256 QSSLVPSGFECVAHPVFLRVE----------PPSAVTSARRTAARRRSLVDETLPRAATAAVSASVASSSAAWAGAEDG---LAALGGDLVVGGAGGGKVAGDARREVDVVCPICLGKFEQAVTLTTCLHSFCHTCILGWYEHTVAVALARGDLSAFRPS---------AAANPAAHFSEETGANS----RSQAPAPYRCPLCQVPGPYFLGVEPAPRWRS-----EAAGGEDKP-KLKFRLLGARTVLGGGGPASGGVEVDRADGG 960
            + +LVPSGFECVAHPVF R +          PP++ T+AR       S ++ T     TAA +  V     A  G +D      A G   ++ G GG        REV  VCPICLG+FE+ VTLT+CLH+FCHTCILGWYEHTVAVAL+RG+LSAF P           ++N  +  S  +  N     +  AP PYRCPLCQVPGP+FL VE  PR  S     EA     KP KLKFRLLGA TV GGGGP S GV VD   GG
Sbjct:   15 RDTLVPSGFECVAHPVFFRNDVSDGSSDYAAPPTSNTAAR-------SAMNSTTTIDPTAAAAWDVE----ALEGGDDSGRDTDAPGNASIISGRGG--------REVHSVCPICLGRFEEPVTLTSCLHTFCHTCILGWYEHTVAVALSRGNLSAFHPERGNSNTWRGGSSNDISGSSGTSTGNRDGGRKRPAPVPYRCPLCQVPGPFFLAVE-RPRSSSFKGKREANPKSSKPSKLKFRLLGAPTVFGGGGPVSRGVAVDEHAGG 261
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BLAST of mRNA_S-dermatodea_contig12047.1273.1 vs. uniprot
Match: D8LPV3_ECTSI (zf-RING_UBOX domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPV3_ECTSI)

HSP 1 Score: 59.3 bits (142), Expect = 1.540e-7
Identity = 25/35 (71.43%), Postives = 29/35 (82.86%), Query Frame = 1 
Query:  517 AGDARREVDVVCPICLGKFEQAVTLTTCLHSFCHT 621
            +G   REV  VCPICLGKFE+ VTLT+CLH+FCHT
Sbjct:   40 SGRGGREVHSVCPICLGKFEEPVTLTSCLHTFCHT 74
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12047.1273.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L8Z2_9PHAE3.970e-4848.31RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D8LPV3_ECTSI1.540e-771.43zf-RING_UBOX domain-containing protein n=1 Tax=Ect... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12047contigS-dermatodea_contig12047:1167..3139 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size969
Cds size969
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924228.6344843-CDS-S-dermatodea_contig12047:1166..17891622924228.6344843-CDS-S-dermatodea_contig12047:1166..1789Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12047 1167..1789 +
1694079109.4495666-CDS-S-dermatodea_contig12047:1166..17891694079109.4495666-CDS-S-dermatodea_contig12047:1166..1789Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12047 1167..1789 +
1622924228.642832-CDS-S-dermatodea_contig12047:2793..31391622924228.642832-CDS-S-dermatodea_contig12047:2793..3139Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12047 2794..3139 +
1694079109.4621193-CDS-S-dermatodea_contig12047:2793..31391694079109.4621193-CDS-S-dermatodea_contig12047:2793..3139Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12047 2794..3139 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12047.1273.1prot_S-dermatodea_contig12047.1273.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12047 1167..3139 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12047.1273.1

>prot_S-dermatodea_contig12047.1273.1 ID=prot_S-dermatodea_contig12047.1273.1|Name=mRNA_S-dermatodea_contig12047.1273.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=323bp
STLLGHVKFACRLLLRRGKQPTYMSLPVYGPEPRPVSFPLTAASRTSVIE
HPAAVSHHHHQQATAPTLADASAPSPAMPTVSFEPQSSLVPSGFECVAHP
VFLRVEPPSAVTSARRTAARRRSLVDETLPRAATAAVSASVASSSAAWAG
AEDGLAALGGDLVVGGAGGGKVAGDARREVDVVCPICLGKFEQAVTLTTC
LHSFCHTCILGWYEHTVAVALARGDLSAFRPSAAANPAAHFSEETGANSR
SQAPAPYRCPLCQVPGPYFLGVEPAPRWRSEAAGGEDKPKLKFRLLGART
VLGGGGPASGGVEVDRADGGDPG
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mRNA from alignment at S-dermatodea_contig12047:1167..3139+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12047.1273.1 ID=mRNA_S-dermatodea_contig12047.1273.1|Name=mRNA_S-dermatodea_contig12047.1273.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1973bp|location=Sequence derived from alignment at S-dermatodea_contig12047:1167..3139+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGCACCCTCCTCGGCCACGTCAAGTTTGCCTGCCGCTTGCTGCTGCGGCG
GGGCAAACAGCCTACCTACATGTCCTTGCCTGTGTACGGCCCTGAACCTC
GGCCGGTGTCCTTCCCACTGACCGCTGCTTCGCGAACGAGCGTCATAGAA
CACCCCGCCGCTGTCTCCCACCACCATCATCAACAAGCGACAGCACCTAC
CTTGGCCGATGCCTCCGCACCTTCGCCGGCGATGCCAACTGTAAGCTTCG
AGCCGCAAAGCTCGCTCGTACCCAGTGGTTTCGAGTGCGTGGCTCATCCG
GTCTTCCTTCGTGTCGAGCCTCCTTCTGCCGTTACCTCTGCGAGACGTAC
GGCTGCTCGCCGGAGATCGCTTGTTGACGAAACCCTGCCCCGCGCCGCGA
CAGCAGCAGTGAGTGCCAGCGTTGCGAGCTCGTCGGCGGCCTGGGCCGGA
GCCGAAGATGGCTTGGCAGCTCTCGGTGGCGATTTGGTGGTCGGCGGTGC
TGGAGGTGGAAAGGTCGCGGGGGATGCCCGGCGGGAGGTTGATGTCGTCT
GCCCCATTTGCCTTGGGAAGTTTGAGCAGGCGGTGACTCTCACGACCTGT
CTCCACAGCTTTTGCCACACTTGGTGAGTGCGAGTCAAGGACGAGGAACA
GTATCATACAAGTTTACACGCGACGAAGGGTAGGGTCGGCCCTCGACCTC
TCTGGCGCGTTTGGCGAGCTCGATCGGAATGAAAACCCGAGAGGACGTTG
ATCTGTCCTGAAACGCCCGTTCTGCTGTGATTGATTACATTGTGGCATCC
CGTATCATACCTGGCGGAAGGCTGCGACTGCGACTACTGTATGTGCCTGT
GTGTCCTGTAACACAGCACAAGTCAGCCAGTCCGTGGTATTGTAGAATAC
CAGGTACTGTAGGTGTTTTCACTGTAGGTGATTTCATGTCTTTTTCGTAC
AAGTATCTCTTGTGTCGTTTACAATCTGCCCAGAGCTCCCCGTGTGCGCA
ACCTTTGAGCCTCCTGCCCCCAGCACAGACAGTAGAACCGTGTACAGTAG
TCTACACGAGCTACACTGTGTACAACAAGTAGTCTACACCACTTCCGTCT
TTGAACCTCCTGCCCACAGCGGTAGAAGCGTGTATAATTCACAGCAGAGC
AAACTTGTGCAGGCTGGGCCGGGGAAGAAGCTCAATACTTCGTATATGTT
TTATCGTAATGCACAGCTCATTTTTTCGAGTCTTTACCTTAAATTTTGAC
ACGTGGTTCGTAGTACACTCGCGGAAGACTCCCTGTATGAGCAGTATCGA
CGCCAGCTTTGCGCGTCTCGCAACGTGCCGCCCGCCACGCTCTTCACCGC
GACAGTGCACATGCTGTCCAAAGCAGCGCCCGGCACACAAACAAACAAAA
AATCGTGCCCGGCATACACAGACCGACACACGTATATCCTCCCTACCACG
CCTCTGACAAACAGTACCATAACACCCGCGTAGCGCCACGTGACAACAAT
ACTCTAAAATCTAACCCTTCCACCAAGACTATTATTTAACGCTCCAACCC
TCCCTGCCTTCCTCTTATTTCCCCCTTCCCTGCCCCAACATCTTCGCCCC
ACACACGAAACCTCCTTTCTCCCGAAGCATCTTGGGGTGGTACGAGCACA
CCGTCGCCGTCGCTCTCGCCCGAGGTGACCTGTCCGCGTTCCGCCCGTCG
GCCGCAGCAAACCCCGCTGCTCATTTCTCCGAAGAAACAGGAGCCAACAG
CCGCTCCCAGGCGCCCGCACCCTACCGGTGCCCGCTGTGTCAGGTCCCAG
GGCCTTACTTCCTCGGCGTCGAGCCCGCTCCGCGCTGGCGCTCCGAGGCC
GCCGGAGGTGAGGACAAACCAAAGCTTAAGTTTCGGCTGCTTGGGGCGCG
CACGGTCTTGGGCGGCGGTGGGCCGGCGAGCGGGGGAGTGGAGGTGGACC
GCGCGGACGGAGGAGACCCAGGT
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Coding sequence (CDS) from alignment at S-dermatodea_contig12047:1167..3139+

>mRNA_S-dermatodea_contig12047.1273.1 ID=mRNA_S-dermatodea_contig12047.1273.1|Name=mRNA_S-dermatodea_contig12047.1273.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1938bp|location=Sequence derived from alignment at S-dermatodea_contig12047:1167..3139+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGCACCCTCCTCGGCCACGTCAAGTTTGCCTGCCGCTTGCTGCTGCGGCG
GGGCAAACAGCCTACCTACATGTCCTTGCCTGTGTACGGCCCTGAACCTC
GGCCGGTGTCCTTCCCACTGACCGCTGCTTCGCGAACGAGCGTCATAGAA
CACCCCGCCGCTGTCTCCCACCACCATCATCAACAAGCGACAGCACCTAC
CTTGGCCGATGCCTCCGCACCTTCGCCGGCGATGCCAACTGTAAGCTTCG
AGCCGCAAAGCTCGCTCGTACCCAGTGGTTTCGAGTGCGTGGCTCATCCG
GTCTTCCTTCGTGTCGAGCCTCCTTCTGCCGTTACCTCTGCGAGACGTAC
GGCTGCTCGCCGGAGATCGCTTGTTGACGAAACCCTGCCCCGCGCCGCGA
CAGCAGCAGTGAGTGCCAGCGTTGCGAGCTCGTCGGCGGCCTGGGCCGGA
GCCGAAGATGGCTTGGCAGCTCTCGGTGGCGATTTGGTGGTCGGCGGTGC
TGGAGGTGGAAAGGTCGCGGGGGATGCCCGGCGGGAGGTTGATGTCGTCT
GCCCCATTTGCCTTGGGAAGTTTGAGCAGGCGGTGACTCTCACGACCTGT
CTCCACAGCTTTTGCCACACTTGAGCACCCTCCTCGGCCACGTCAAGTTT
GCCTGCCGCTTGCTGCTGCGGCGGGGCAAACAGCCTACCTACATGTCCTT
GCCTGTGTACGGCCCTGAACCTCGGCCGGTGTCCTTCCCACTGACCGCTG
CTTCGCGAACGAGCGTCATAGAACACCCCGCCGCTGTCTCCCACCACCAT
CATCAACAAGCGACAGCACCTACCTTGGCCGATGCCTCCGCACCTTCGCC
GGCGATGCCAACTGTAAGCTTCGAGCCGCAAAGCTCGCTCGTACCCAGTG
GTTTCGAGTGCGTGGCTCATCCGGTCTTCCTTCGTGTCGAGCCTCCTTCT
GCCGTTACCTCTGCGAGACGTACGGCTGCTCGCCGGAGATCGCTTGTTGA
CGAAACCCTGCCCCGCGCCGCGACAGCAGCAGTGAGTGCCAGCGTTGCGA
GCTCGTCGGCGGCCTGGGCCGGAGCCGAAGATGGCTTGGCAGCTCTCGGT
GGCGATTTGGTGGTCGGCGGTGCTGGAGGTGGAAAGGTCGCGGGGGATGC
CCGGCGGGAGGTTGATGTCGTCTGCCCCATTTGCCTTGGGAAGTTTGAGC
AGGCGGTGACTCTCACGACCTGTCTCCACAGCTTTTGCCACACTTGCATC
TTGGGGTGGTACGAGCACACCGTCGCCGTCGCTCTCGCCCGAGGTGACCT
GTCCGCGTTCCGCCCGTCGGCCGCAGCAAACCCCGCTGCTCATTTCTCCG
AAGAAACAGGAGCCAACAGCCGCTCCCAGGCGCCCGCACCCTACCGGTGC
CCGCTGTGTCAGGTCCCAGGGCCTTACTTCCTCGGCGTCGAGCCCGCTCC
GCGCTGGCGCTCCGAGGCCGCCGGAGGTGAGGACAAACCAAAGCTTAAGT
TTCGGCTGCTTGGGGCGCGCACGGTCTTGGGCGGCGGTGGGCCGGCGAGC
GGGGGAGTGGAGGTGGACCGCGCGGACGGAGGAGACCCAGGTCATCTTGG
GGTGGTACGAGCACACCGTCGCCGTCGCTCTCGCCCGAGGTGACCTGTCC
GCGTTCCGCCCGTCGGCCGCAGCAAACCCCGCTGCTCATTTCTCCGAAGA
AACAGGAGCCAACAGCCGCTCCCAGGCGCCCGCACCCTACCGGTGCCCGC
TGTGTCAGGTCCCAGGGCCTTACTTCCTCGGCGTCGAGCCCGCTCCGCGC
TGGCGCTCCGAGGCCGCCGGAGGTGAGGACAAACCAAAGCTTAAGTTTCG
GCTGCTTGGGGCGCGCACGGTCTTGGGCGGCGGTGGGCCGGCGAGCGGGG
GAGTGGAGGTGGACCGCGCGGACGGAGGAGACCCAGGT
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