mRNA_S-dermatodea_contig12046.1271.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12046.1271.1
Unique NamemRNA_S-dermatodea_contig12046.1271.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig12046.1271.1 vs. uniprot
Match: D7FN52_ECTSI (Heat shock protein 40 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FN52_ECTSI)

HSP 1 Score: 260 bits (664), Expect = 2.290e-80
Identity = 156/187 (83.42%), Postives = 168/187 (89.84%), Query Frame = 1 
Query:    1 DDLDGKEASGPDSFYTVYDPVFERNKRFAVILPAPSLGDDDAPIDEVNNFYEYWVNFESWRDFSLEGEHDLEDAHDRYEKRWMIKENERKAKDLKRKEVKRLALLVDRARAADPRIQRERVREREAKIAAKESKXXXXXXXXXXXXXXXXXXXXXXXXXXXRVRAVARQAKAERESLKKETRRRKKV 561
            D+L+GKE SGP SFY VY+PVFERNKRFAVILPAPSLGDDD PIDEVNNFYEYWVNFESWRDFSLEGEHD+EDAHDRYEKRWMIKEN+RK+K+LKRKEVKRLALLVDRARA DPRI RERVREREAKIAAKE+K         XXXXXXXXXXXXXXXXX R+RA++RQAKA RE+ KKE RRRKKV
Sbjct:  165 DELEGKEVSGPTSFYKVYEPVFERNKRFAVILPAPSLGDDDTPIDEVNNFYEYWVNFESWRDFSLEGEHDVEDAHDRYEKRWMIKENDRKSKELKRKEVKRLALLVDRARAVDPRIIRERVREREAKIAAKENKEREKREREQXXXXXXXXXXXXXXXXXERLRAISRQAKAGREAHKKEMRRRKKV 351
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BLAST of mRNA_S-dermatodea_contig12046.1271.1 vs. uniprot
Match: A0A835Z5V4_9STRA (J domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5V4_9STRA)

HSP 1 Score: 158 bits (399), Expect = 2.900e-43
Identity = 80/130 (61.54%), Postives = 99/130 (76.15%), Query Frame = 1 
Query:    1 DDLDGKEASGPDSFYTVYDPVFERNKRFAVILPAPSLGDDDAPIDEVNNFYEYWVNFESWRDFSLEG-EHDLEDAHDRYEKRWMIKENERKAKDLKRKEVKRLALLVDRARAADPRIQRERVREREAKIA 387
            D +   +A     F+ VY PVF RN+RFAV++PAP LG DDAPI+EVN FYEYW NFESWRDF+L+  EH+L+DA DRY KRWM KEN +++KDLK+KE KRL+ LVD A AADPR++R R  E +AK A
Sbjct:  185 DTIPADDAGKNGDFFEVYGPVFSRNERFAVVVPAPPLGGDDAPIEEVNKFYEYWANFESWRDFTLDSAEHNLDDAEDRYHKRWMEKENAKRSKDLKKKEYKRLSRLVDNAYAADPRVKRARQAEADAKRA 314
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BLAST of mRNA_S-dermatodea_contig12046.1271.1 vs. uniprot
Match: F0Y465_AURAN (J domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y465_AURAN)

HSP 1 Score: 123 bits (308), Expect = 9.730e-32
Identity = 69/116 (59.48%), Postives = 78/116 (67.24%), Query Frame = 1 
Query:   13 GKEASGPDS---FYTVYDPVFERNKRFAVILPAPSLGDDDAPIDEVNNFYEYWVNFESWRDFSLEG-EHDLEDAHDRYEKRWMIKENERKAKDLKRKEVKRLALLVDRARAADPRI 348
            GKEAS       F+  Y PVF  N RFA  LPAP LG  DA   +V+ FY YWV FESWRDF LE  EHD + A DRYEKRWM KENE+ AK  KR+E+ R+  LVDRARA DPR+
Sbjct:   91 GKEASEQGEAFDFFATYGPVFASNARFAEKLPAPELGGADALEADVDAFYAYWVRFESWRDFGLEAREHDPDAAEDRYEKRWMAKENEKLAKKRKREEMNRIVSLVDRARANDPRL 206
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BLAST of mRNA_S-dermatodea_contig12046.1271.1 vs. uniprot
Match: A0A3R7MV45_9STRA (J domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7MV45_9STRA)

HSP 1 Score: 127 bits (320), Expect = 1.950e-31
Identity = 65/119 (54.62%), Postives = 82/119 (68.91%), Query Frame = 1 
Query:   37 SFYTVYDPVFERNKRFAVILPAPSLGDDDAPIDEVNNFYEYWVNFESWRDFSLEGEHDLEDAHDRYEKRWMIKENERKAKDLKRKEVKRLALLVDRARAADPRIQRERVREREAKIAAK 393
            SFY +YDPVF+ N RF+   P P LG DD PIDEV  FY++W  F+SWRDF+ + EHD++ A  R  KRWM K+NE   K  K+KE  RLA LVDRA A DPRI+R +  E++ K+ AK
Sbjct:  208 SFYDLYDPVFKANARFSENKPVPQLGGDDLPIDEVYAFYDFWNKFDSWRDFTHDSEHDVDSAEHRDHKRWMAKKNEAAGKKKKKKEYARLASLVDRALAVDPRIRRVKQEEKDRKLRAK 326
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BLAST of mRNA_S-dermatodea_contig12046.1271.1 vs. uniprot
Match: A0A485KEN6_9STRA (Aste57867_3057 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KEN6_9STRA)

HSP 1 Score: 126 bits (317), Expect = 4.130e-31
Identity = 66/124 (53.23%), Postives = 87/124 (70.16%), Query Frame = 1 
Query:   40 FYTVYDPVFERNKRFAVILPAPSLGDDDAPIDEVNNFYEYWVNFESWRDFSLEGEHDLEDAHDRYEKRWMIKENERKAKDLKRKEVKRLALLVDRARAADPRIQR-------ERVREREAKIAA 390
            FY +Y PVFERN RF+ + P PSLGDD+ P+D+V +FY +W  F+SWRDF+   EHD++ A  R EKR ++K+NE  AK  K+KE  RLA LVDRA+A DPRI+R       ++  ER+AK AA
Sbjct:  185 FYALYGPVFERNARFSEVKPVPSLGDDETPLDDVTSFYNFWFQFDSWRDFTHNAEHDVDSAEHRDEKRHLMKKNEAAAKKQKKKEYARLATLVDRAQANDPRIRRVKQAAKDKKENERKAKEAA 308
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BLAST of mRNA_S-dermatodea_contig12046.1271.1 vs. uniprot
Match: A0A024TU57_9STRA (J domain-containing protein n=12 Tax=Aphanomyces TaxID=100860 RepID=A0A024TU57_9STRA)

HSP 1 Score: 126 bits (316), Expect = 5.290e-31
Identity = 69/131 (52.67%), Postives = 87/131 (66.41%), Query Frame = 1 
Query:   10 DGKEASGPDSFYTVYDPVFERNKRFAVILPAPSLGDDDAPIDEVNNFYEYWVNFESWRDFSLEGEHDLEDAHDRYEKRWMIKENERKAKDLKRKEVKRLALLVDRARAADPRIQRERVREREAKIAAKESK 402
            DGK   G   FY +Y PVFERN RF+ I P P LGDD  P+D+V  FY +W  F+SWRDF+   EHD++ A  R EKR+++K+NE  AK LK+KE  RLA LVDRA+A DPR++R        K AAK+ K
Sbjct:  172 DGK---GTVDFYALYGPVFERNARFSEIKPVPLLGDDSTPLDDVTAFYNFWFKFDSWRDFTHNAEHDVDSAEHRDEKRFLMKKNEAAAKKLKKKEYARLATLVDRAQANDPRLRR-------VKQAAKDKK 292
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BLAST of mRNA_S-dermatodea_contig12046.1271.1 vs. uniprot
Match: A0A3M6VLA3_9STRA (J domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VLA3_9STRA)

HSP 1 Score: 125 bits (314), Expect = 9.980e-31
Identity = 66/119 (55.46%), Postives = 81/119 (68.07%), Query Frame = 1 
Query:   37 SFYTVYDPVFERNKRFAVILPAPSLGDDDAPIDEVNNFYEYWVNFESWRDFSLEGEHDLEDAHDRYEKRWMIKENERKAKDLKRKEVKRLALLVDRARAADPRIQRERVREREAKIAAK 393
            SFY +Y PVF  N RF+   P P+LG DD PIDEV  FY++W  F+SWRDF+ + EHD+E A  R  KRWM K+NE  AK  K+KE  RLA LVDRA A DPRI+R +  E++ K  AK
Sbjct:  182 SFYELYGPVFAANARFSDNQPVPTLGGDDKPIDEVYAFYDFWNKFDSWRDFTHDSEHDVESAEHRDHKRWMAKKNEAVAKKKKKKEYARLASLVDRALAVDPRIRRVKQEEKDRKAQAK 300
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BLAST of mRNA_S-dermatodea_contig12046.1271.1 vs. uniprot
Match: A0A6G0WNI9_9STRA (J domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WNI9_9STRA)

HSP 1 Score: 124 bits (310), Expect = 4.030e-30
Identity = 65/124 (52.42%), Postives = 86/124 (69.35%), Query Frame = 1 
Query:   40 FYTVYDPVFERNKRFAVILPAPSLGDDDAPIDEVNNFYEYWVNFESWRDFSLEGEHDLEDAHDRYEKRWMIKENERKAKDLKRKEVKRLALLVDRARAADPRIQR-------ERVREREAKIAA 390
            FY +Y PVFERN RF+ I P P LGDD+ P++EV  FY +W  F+SWRDF+   EHD++ A  R EKR+++K+NE  AK  K+KE  RLA LVDRA+A DPR++R       ++  ER+AK AA
Sbjct:  183 FYALYGPVFERNARFSEIKPVPLLGDDETPLEEVQEFYNFWYKFDSWRDFTHNAEHDVDSAEHRDEKRFLMKKNEAAAKKQKKKEYARLASLVDRAQANDPRLRRVKQAAKDKKENERKAKEAA 306
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BLAST of mRNA_S-dermatodea_contig12046.1271.1 vs. uniprot
Match: T0QNX7_SAPDV (J domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QNX7_SAPDV)

HSP 1 Score: 123 bits (308), Expect = 7.490e-30
Identity = 65/121 (53.72%), Postives = 83/121 (68.60%), Query Frame = 1 
Query:   40 FYTVYDPVFERNKRFAVILPAPSLGDDDAPIDEVNNFYEYWVNFESWRDFSLEGEHDLEDAHDRYEKRWMIKENERKAKDLKRKEVKRLALLVDRARAADPRIQRERVREREAKIAAKESK 402
            FY +Y PVFERN RF+ I+P P LGDD+  ID V +FY +W  F+SWRDF+   EHD++    R EKR M+K+NE +AK LK+KE  RLA LVDRA+A DPR++R        K AAK+ K
Sbjct:  184 FYALYGPVFERNARFSSIVPVPMLGDDETDIDTVQSFYNFWHTFDSWRDFTHNAEHDVDSVESRDEKRHMMKKNEAQAKKLKKKEYSRLADLVDRAQANDPRLRR-------VKQAAKDKK 297
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BLAST of mRNA_S-dermatodea_contig12046.1271.1 vs. uniprot
Match: A0A067BNZ7_SAPPC (J domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BNZ7_SAPPC)

HSP 1 Score: 121 bits (303), Expect = 1.670e-29
Identity = 64/121 (52.89%), Postives = 83/121 (68.60%), Query Frame = 1 
Query:   40 FYTVYDPVFERNKRFAVILPAPSLGDDDAPIDEVNNFYEYWVNFESWRDFSLEGEHDLEDAHDRYEKRWMIKENERKAKDLKRKEVKRLALLVDRARAADPRIQRERVREREAKIAAKESK 402
            FY +Y PVFERN RF+ I P P+LGDD+  +D V +FY +W  F+SWRDF+   EHD++    R EKR M+K+NE +AK LK+KE  RLA LVDRA+A DPR++R        K AAK+ K
Sbjct:  148 FYALYGPVFERNARFSNITPVPALGDDETDLDTVQSFYNFWHTFDSWRDFTHNAEHDVDSVESRDEKRHMMKKNEVQAKKLKKKEYNRLADLVDRAQANDPRLRR-------VKQAAKDKK 261
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12046.1271.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FN52_ECTSI2.290e-8083.42Heat shock protein 40 n=2 Tax=Ectocarpus TaxID=287... [more]
A0A835Z5V4_9STRA2.900e-4361.54J domain-containing protein (Fragment) n=1 Tax=Tri... [more]
F0Y465_AURAN9.730e-3259.48J domain-containing protein (Fragment) n=1 Tax=Aur... [more]
A0A3R7MV45_9STRA1.950e-3154.62J domain-containing protein n=3 Tax=Phytophthora k... [more]
A0A485KEN6_9STRA4.130e-3153.23Aste57867_3057 protein n=1 Tax=Aphanomyces stellat... [more]
A0A024TU57_9STRA5.290e-3152.67J domain-containing protein n=12 Tax=Aphanomyces T... [more]
A0A3M6VLA3_9STRA9.980e-3155.46J domain-containing protein n=1 Tax=Peronospora ef... [more]
A0A6G0WNI9_9STRA4.030e-3052.42J domain-containing protein n=1 Tax=Aphanomyces eu... [more]
T0QNX7_SAPDV7.490e-3053.72J domain-containing protein n=1 Tax=Saprolegnia di... [more]
A0A067BNZ7_SAPPC1.670e-2952.89J domain-containing protein n=1 Tax=Saprolegnia pa... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12046contigS-dermatodea_contig12046:1339..7026 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score262.7
Seed ortholog evalue1.4e-67
Seed eggNOG ortholog2880.D7FN52
KEGG koko:K09522
GOsGO:0000082,GO:0000122,GO:0000278,GO:0000976,GO:0000977,GO:0000978,GO:0000981,GO:0000982,GO:0000987,GO:0000988,GO:0000989,GO:0001012,GO:0001067,GO:0001076,GO:0001077,GO:0001134,GO:0001135,GO:0001228,GO:0001701,GO:0001775,GO:0002376,GO:0002520,GO:0002521,GO:0002682,GO:0002684,GO:0002694,GO:0002696,GO:0002697,GO:0002699,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006139,GO:0006325,GO:0006338,GO:0006351,GO:0006355,GO:0006357,GO:0006366,GO:0006725,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006996,GO:0007049,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009790,GO:0009792,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010638,GO:0016043,GO:0016070,GO:0017145,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019904,GO:0022402,GO:0022407,GO:0022409,GO:0030001,GO:0030097,GO:0030098,GO:0030099,GO:0030154,GO:0030155,GO:0030183,GO:0031056,GO:0031058,GO:0031060,GO:0031062,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031399,GO:0031401,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032774,GO:0033043,GO:0033044,GO:0034097,GO:0034641,GO:0034645,GO:0034654,GO:0035295,GO:0042113,GO:0042221,GO:0042592,GO:0043009,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043370,GO:0043372,GO:0043565,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044770,GO:0044772,GO:0044843,GO:0045321,GO:0045580,GO:0045582,GO:0045595,GO:0045597,GO:0045619,GO:0045621,GO:0045622,GO:0045624,GO:0045785,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045944,GO:0046483,GO:0046634,GO:0046635,GO:0046637,GO:0046638,GO:0046649,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048536,GO:0048538,GO:0048565,GO:0048566,GO:0048568,GO:0048583,GO:0048584,GO:0048731,GO:0048732,GO:0048856,GO:0048869,GO:0048872,GO:0050776,GO:0050778,GO:0050789,GO:0050793,GO:0050794,GO:0050863,GO:0050865,GO:0050867,GO:0050870,GO:0050896,GO:0051094,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051246,GO:0051247,GO:0051249,GO:0051251,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051301,GO:0051569,GO:0051570,GO:0051571,GO:0051574,GO:0051716,GO:0055123,GO:0060255,GO:0065007,GO:0065008,GO:0070013,GO:0070741,GO:0070838,GO:0070887,GO:0071310,GO:0071345,GO:0071354,GO:0071704,GO:0071840,GO:0071987,GO:0072511,GO:0080090,GO:0090304,GO:0097159,GO:0097659,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902105,GO:1902107,GO:1902275,GO:1902679,GO:1902680,GO:1903037,GO:1903039,GO:1903047,GO:1903506,GO:1903507,GO:1903508,GO:1903706,GO:1903708,GO:1905269,GO:1990823,GO:1990830,GO:1990837,GO:2000026,GO:2000112,GO:2000113,GO:2000514,GO:2000516,GO:2001141,GO:2001252
EggNOG free text desc.ubiquitin modification-dependent histone binding
EggNOG OGsKOG0724@1,KOG0724@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03110
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDnaJ (Hsp40) and SANT/Myb domain transcription factor
Ec32 orthologEc-06_008420.1
Exons5
Model size588
Cds size588
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12046.1271.1prot_S-dermatodea_contig12046.1271.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12046 1339..7026 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924228.5358229-CDS-S-dermatodea_contig12046:1338..15241622924228.5358229-CDS-S-dermatodea_contig12046:1338..1524Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12046 1339..1524 -
1694079109.3886087-CDS-S-dermatodea_contig12046:1338..15241694079109.3886087-CDS-S-dermatodea_contig12046:1338..1524Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12046 1339..1524 -
1622924228.5458837-CDS-S-dermatodea_contig12046:1750..18231622924228.5458837-CDS-S-dermatodea_contig12046:1750..1823Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12046 1751..1823 -
1694079109.3999295-CDS-S-dermatodea_contig12046:1750..18231694079109.3999295-CDS-S-dermatodea_contig12046:1750..1823Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12046 1751..1823 -
1622924228.5547686-CDS-S-dermatodea_contig12046:2912..29651622924228.5547686-CDS-S-dermatodea_contig12046:2912..2965Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12046 2913..2965 -
1694079109.4088237-CDS-S-dermatodea_contig12046:2912..29651694079109.4088237-CDS-S-dermatodea_contig12046:2912..2965Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12046 2913..2965 -
1622924228.5658896-CDS-S-dermatodea_contig12046:3419..35571622924228.5658896-CDS-S-dermatodea_contig12046:3419..3557Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12046 3420..3557 -
1694079109.4176712-CDS-S-dermatodea_contig12046:3419..35571694079109.4176712-CDS-S-dermatodea_contig12046:3419..3557Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12046 3420..3557 -
1622924228.5742126-CDS-S-dermatodea_contig12046:6888..70261622924228.5742126-CDS-S-dermatodea_contig12046:6888..7026Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12046 6889..7026 -
1694079109.4269025-CDS-S-dermatodea_contig12046:6888..70261694079109.4269025-CDS-S-dermatodea_contig12046:6888..7026Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12046 6889..7026 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12046.1271.1

>prot_S-dermatodea_contig12046.1271.1 ID=prot_S-dermatodea_contig12046.1271.1|Name=mRNA_S-dermatodea_contig12046.1271.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=196bp
DDLDGKEASGPDSFYTVYDPVFERNKRFAVILPAPSLGDDDAPIDEVNNF
YEYWVNFESWRDFSLEGEHDLEDAHDRYEKRWMIKENERKAKDLKRKEVK
RLALLVDRARAADPRIQRERVREREAKIAAKESKEREKREREQAKLQAVE
DEKRVKQEEEERVRAVARQAKAERESLKKETRRRKKVRVLLVCLSL
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mRNA from alignment at S-dermatodea_contig12046:1339..7026-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12046.1271.1 ID=mRNA_S-dermatodea_contig12046.1271.1|Name=mRNA_S-dermatodea_contig12046.1271.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5688bp|location=Sequence derived from alignment at S-dermatodea_contig12046:1339..7026- (Saccorhiza dermatodea SderLu1190fm monoicous)
GATGACCTCGACGGCAAGGAGGCGAGCGGGCCGGACAGCTTCTACACCGT
CTACGACCCGGTCTTCGAGCGAAACAAGCGCTTCGCCGTCATCCTCCCGG
CGCCGAGCCTCGGCGACGACGACGCCCCCATTGATGAGGTCAGAGGGGAT
AATGAGGAGGGCGTTGTGTGTGTGTGTGTGTGTTTTTTTTTCCTGTCCAG
ACAAGGGGAGAAAAGAAAGGACTATTTACGTATTATTTTATCTCTTTTTT
GCTGTGTTCAAATGCTTACTTCTATGATACTTGATACTGTTACGACTAGA
CACAACGTGTACAACGCGCGCGCTGTGCTGTCGGCGTTCGAAGAATCTTA
TTAATTAATGCAACAGTGACCGATGGTGTATATATTTTTTTAGACAAGGA
TGCTGCCTGATGCCAAACAACTTGATGTTTGTGTTGAGCGATATTTTTTT
TATATAAGCGAAAACACAGCAGCGACACGCACAGTATCGCAGCTCGACCG
CGTTCGACCTCCGTGTCGCGTTCCGTCGGCATATCGTCCTGCCAACGCAC
AACTCACACGGGCGTAGCCGTCCCTACCCGCTAGGAATTAAAAAAAAACA
CACGAGAGCTTTTTTGTTTTTTGTTTTTTCTTTCTCCCAATTGACTGACC
AGCCCGATCGTCAGCCCTTTTTTCCGATGTCAACCGCGTCTGTGGCGACA
AAAAAGGATCGATCAACCTACATATGTGTATAACACGAGCATCTGACGAT
AACCACCTGTGTTGGAAATCGTTGCTTCGTAGCACCTCTGTCACTCTTAC
TGATGCGTCGTTTCGACTCCCTGTATCATACAAGCAAGCGATCTCCAAAT
GCGAGGAAAGTGGCGGGCGATGAGGCCCTCAGAAAACGGTGCTTTCTTCT
ATATGTATCTCCCTGCCCAACGAATACGCACTTTTGAGGACACGAAGGTC
CAACACACGAAGGTCGAGGGGGCGCAAGATCCTAGGCAGCCAGATTATAT
TTTCAGTGGGTAACGAGGAGCACTGCAATAGCACTATAATATCCAGGGCT
GTCCTCGGGATTTTTACCGCGGTAACGCGGTGAATCCACCATAAAAGAGT
TACAAATGAGGACTAAACAACGGCAAATTAATCGCAAGAACGTCAACATG
GCGGGGAATCGAATGGTGTTTTGTTTTTTACAAAAGCAAGTGTGGACCCC
GGTATGTCCACGGTAATTTTTCCACGGTAATTGAATAATTCAATTACCGT
GGAAATATTACCGTGGACATACCGCGGTCCCTACTTGGTATTGTAAATAA
TATAAAACACCATTCGATTCCCCGTAATGTTGACTTTCTTGCGACGAATC
TGCCGCTGTTTAGTCGGCATTCGTAACTTCTTTTATGGTGGATTCACCGC
GATACCGCGGTCCGCGGTAAAAATCCCGAGGACAGCCCTGATAATATCAC
TATAATATAACTATAATTGCACTCGCTGGGTGTTGGTCCCGTTCTTGGGC
TCGATGGTCTTGTGATCGTTCAGAGGCGATCAGCCTCGGCCATGGATGTC
GGAAACCTCCGGGATGTGCGGCGTGTAGGGGACAAAGGCTATTTCGTTGG
AATCGTGTGCTCTATCATACACACGTTCGATTTTTAATTTCCCATCCTCG
AAACCCAAAACTAAACAAAAATACAACGGCTTTATGTTAAATATTATGTT
TAATATTGTATGTTAAACCTTTTGGTTTTATTAGCAAATTGTACCTGGTA
TATATTATTAGTATTAATAGGGCTCTCCGAAACGGCCAAAAACTATCTCG
ATGCCAGTCGACAGCTACAGCCCCGTTTCCCTTGGGTTCCGTTCTCTCTN
NNNNNNNNNCCATGCGGTTCCCCAGGGCTCCGCTTCAAGCACGCCTCATT
ACGTTCTAACCGGCGCTCCAAACAGGGGGCTACAGCAGTAGTACCAGAAG
GGTTAGATGCTGTGTATTAAGTACTGTATGTGAGGTACTTGGCTGGCAGA
TGGCCTAATATCTAAAACGAACTCACTTCCACCCTAGGGTTTATTTTAAT
GTTGTGACCGTCAATTTCTGGTGGCCCTTTTTTTTTTTAGTATGAATACC
CCTTGCTCCGCACCGCCCTTCGGGGTGTGTACAAGTATGTGTGTGTACAG
TATGTGTTTTGTGTGCATTTTCTCTCCTGCGCTTTTTGTTGTTGCTTTGA
TGCTGCTGCTGCTGCTGTTGCTGCTCTCCCTTGTTCTTGCTCTCAAATGT
CACTGTCTGTACATCAGTCTCTTTTTTTAATTAATAGAGCTTCGGACATT
TTTTATTAGCGATTTAGAGTGACCAGCCCACCCTAAAATCCTGTACGATT
TTGAGGCCTATTTTGTACACTAAACTCCTACTTCGAAGTATACAATTTTG
AGGCCCACAACGGCAGCGTTTCCTCCGGGGGTGAACGCCTGCCGTGGGTA
CTACAGCCACGGTGGCCTCCAAACCCGCACACCGTCCTGCCAACGCACAC
GCACACTTTCACGGGCGCAGCCGTGGCTTACCAACCAGTTATAGTTATAT
TATACTGTTATTAGGCTATCATACTACTTGCCTTTTTGGAACTGAGTCAT
TTTTCTGCCTAACGTGATTACTGCAAGCACGGGTGGCTGTGCTGTCGGCG
ACATACGTACACAGACACACCAAGTGCATCGTCGTGCGTGCCAGCTATCG
TAAGCGTGAGAGGCAGGGTGGCGCTTTCCCTCCACCAAGTGGGTGAAGAG
TAGCCGCGATTGGGTCGCCGTCGGACAACAGGTGCTCGTCGGTGCACCTG
GGGAGAGATAGGCAGATATTCTTAGATGGCCCCGATAAACGGACTGACTA
CGAGTATAATACTAATATTTCAGTTCGAAAAGGGTTTTATAAATCGCCTA
TTTATTTGAAAAGTCCAGCGTCAGCGGCAGTAGCAGCAGCAGCAGCTGCT
GCAGCAGCCGTGGGCACGAAAATATTTGACAGGACATAATCGTGTTGTAT
TGGCGACGGAACAGAAACGAAACGAAAACTATACGGTTTTGACCACAAAA
AATGCCCCAACAGATCGGATCGGATCGGATCGGAACGGGAAAAAAACTAA
AACTCCCCTCTCGTTAAAATACAGACTGCAGTAATGTTTACCAACAGAAA
TACTGGTATAATTGGTGTTTCGGCCGCCATCCCACCCCTCACCACGTATG
CGCTCATCAAGCGCACGCCCACATTCTTTTTTTTTGCTTCTTTTTCGAGC
CCCCCGTTCAGTAAGAGGCGTTTGCCACAAATCGTTGGGAGGGGGGGGGG
GGTCCTCAAGCTTTGCATGCCTTAGCTGCTGGGCTATTGTCCAGGCGTCT
TTGGGAGGACGATTTTTGTCCAATCAGAAGTCGGGTCAGATTAAGTCGAT
CGGCTATACGTATGGAAATCAAACACATCAATCAATCGATCGTCCGTGCG
CCGGGGTGGGGTGGTACAGGTGAACAACTTTTACGAGTACTGGGTCAACT
TCGAGAGCTGGAGGGATTTCTCACTGGAGGGCGAGCACGATCTCGAAGAC
GCGCACGACCGCTACGAGAAGCGGTGGATGATCAAGGAGAACGAGCGCAA
GGCTAAGGTGAGGGGGAGGGCGGGGGGGTTGTTATGACACACACTGAGGA
CACGAAGGTCCGGAGGGTTCAAAGGCCTCACGCAGCTCTAATGTCACTAT
AATAGCACTATAGTATCACTATACAATATCAATATGTTACTATAATAGCA
CTCGCTGGGTGTTGGGTCCCGTTTTCGGTGTTGTTACCGATCCGATCAGC
CTCGGCTGTGGATGTTGGAAACCTCCAGGATGTGCGTGGAGGGGACAAGA
GACATTTATGCTGTACCTGTGCTGACTGCGCAAACAGAAGAAGGGCTTGG
AAAAAACGACAGCGCGAACGAAATCAATATACGAAGGCAAAATGTTTTAG
AGAGTTTTGTGTGCGTACATGCTTTTTCATAACACCAATACACCTGAAGC
GGAAGGCAGGCTCAAGACAAACTTGTTTATTTTTCTTTTGTTTTTTTGTA
TGGCTTAATAGGACCTCAAGCGAAAGGAGGTCAAGCGGCTGGCGCTTCTG
GTCGACAGAGCGAGGTGAGGCTGGATTTTTTTATGGTTTTTCCACGTCTG
CGCGATCAGAAACTTGGGTTTATCATTCGTCGGGCACAAGGTATATGTGT
GTGTGTGCGTGTTATTAATTTTATTTTTGCGAAGTTGTTGTTTTTGTTCT
TGTTTTTGTTTTTTTCATGTGACAATATTTTGTTTTTGCCTTGTTTTGTT
TTACGTATGATAGCTTTGCGTTTCACTGGGAATATCTTGTGATTTGAAAT
TTGACTTGATCACGGCTGGAAATTTCTTTCGAGATTGATCAGTTCAGGTG
TGAGACCATCATTTTCGCCATCACCATCATCACCGTCACCATTACCCCAC
GTGTGCACCAGCGGCCATCCAGACAATCAATCTGCGGGTGCTGCTCTCCG
CAAACTGTTGTCTTCGGTACCGCGCGATGCAGAATGCGTGCGTACGTGCG
TGCGCGAGCGTGGATGCATCCATCGGAATGATGGGGGGGGGGAGAAGCTA
CACTACCAGGAAATCGCTCAGGACAAAGACACTTGTATAATACCATGATC
CCATAAGACCATAGAGCTACAAGTATATACATGACATAAAACACAAAACC
ATAGCATCTTGCGCACGTAAGCTTTCATAGGTGTGTTTAACAGCTTGGAC
CATCTTGCCTTTACAAAATATGGAACCGCGACGCTCGCTCTTAGATATAT
GCCATCTGAAAAAAATAAAAATTGGGGGGCATTTTCGCCGGCCAACCTTA
CCACCTATTAATACCAGTAAGTACATCCAGCAAGTCCATACTCTTTGTAA
CACTCGTTGAAGCGCTTTCTTGCCGATATAAAATGGTACTATTAAGAAAA
GAAAAAAATGTTCGATTAATATTGTGCCCGTGAGTTAGGATAGTACATGT
GAACGAACTACTGTGAGAGATTTTGTTTTTTATGAAATTAAAAATAAATT
AAACAAAAAAATTGTAAAATCAATCAAACGCGTACATTCCTCACGCACAC
CGCCTTGTCTTTTGCTTTTTTTCTGTACCCGCGTGTGTCTTGGTGTGTTC
GCGCGCCATTGTTTTTTTCTTTTTCTTTTCTTTTTCCCGTGTCTTGCCTG
CAGGGCGGCGGATCCCCGCATCCAGCGGGAGAGGGTGAGGGAAAGAGAGG
CCAAGATCGCCGCCAAGGAGAGCAAGGTAACGTGGTCGCCGCGCGCCGAA
GATGGGTCGGGGTGGTTTGGTGGGTTTGTTGGTTGGGGAGAAGACGTGTT
TGCCGCTTTGGGCGATTTGAATGCCCTGTATGTACAGTGTATAGTAGCTC
AGCTTGTAACTCCATCTTTTACTCCTTTCACTATTTATTTTTGTCATGTC
CCGGAAACATTGCTGTCGTGTTTTAATATTGTATTAATGTGTAATATAAT
AGGAGCGCGAGAAAAGGGAACGGGAGCAGGCTAAGCTGCAGGCCGTGGAA
GACGAGAAGAGGGTGAAGCAGGAGGAGGAGGAGCGCGTGAGGGCGGTGGC
GAGACAAGCCAAGGCCGAGAGGGAGTCGTTGAAGAAGGAGACGCGGAGGC
GAAAGAAGGTACGAGTGCTTTTGGTTTGTCTTTCACTA
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Coding sequence (CDS) from alignment at S-dermatodea_contig12046:1339..7026-

>mRNA_S-dermatodea_contig12046.1271.1 ID=mRNA_S-dermatodea_contig12046.1271.1|Name=mRNA_S-dermatodea_contig12046.1271.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1176bp|location=Sequence derived from alignment at S-dermatodea_contig12046:1339..7026- (Saccorhiza dermatodea SderLu1190fm monoicous)
GATGACCTCGACGGCAAGGAGGCGAGCGGGCCGGACAGCTTCTACACCGT
CTACGACCCGGTCTTCGAGCGAAACAAGCGCTTCGCCGTCATCCTCCCGG
CGCCGAGCCTCGGCGACGACGACGCCCCCATTGATGAGGATGACCTCGAC
GGCAAGGAGGCGAGCGGGCCGGACAGCTTCTACACCGTCTACGACCCGGT
CTTCGAGCGAAACAAGCGCTTCGCCGTCATCCTCCCGGCGCCGAGCCTCG
GCGACGACGACGCCCCCATTGATGAGGTGAACAACTTTTACGAGTACTGG
GTCAACTTCGAGAGCTGGAGGGATTTCTCACTGGAGGGCGAGCACGATCT
CGAAGACGCGCACGACCGCTACGAGAAGCGGTGGATGATCAAGGAGAACG
AGCGCAAGGCTAAGGTGAACAACTTTTACGAGTACTGGGTCAACTTCGAG
AGCTGGAGGGATTTCTCACTGGAGGGCGAGCACGATCTCGAAGACGCGCA
CGACCGCTACGAGAAGCGGTGGATGATCAAGGAGAACGAGCGCAAGGCTA
AGGACCTCAAGCGAAAGGAGGTCAAGCGGCTGGCGCTTCTGGTCGACAGA
GCGAGGACCTCAAGCGAAAGGAGGTCAAGCGGCTGGCGCTTCTGGTCGAC
AGAGCGAGGGCGGCGGATCCCCGCATCCAGCGGGAGAGGGTGAGGGAAAG
AGAGGCCAAGATCGCCGCCAAGGAGAGCAAGGGCGGCGGATCCCCGCATC
CAGCGGGAGAGGGTGAGGGAAAGAGAGGCCAAGATCGCCGCCAAGGAGAG
CAAGGAGCGCGAGAAAAGGGAACGGGAGCAGGCTAAGCTGCAGGCCGTGG
AAGACGAGAAGAGGGTGAAGCAGGAGGAGGAGGAGCGCGTGAGGGCGGTG
GCGAGACAAGCCAAGGCCGAGAGGGAGTCGTTGAAGAAGGAGACGCGGAG
GCGAAAGAAGGTACGAGTGCTTTTGGTTTGTCTTTCACTAGAGCGCGAGA
AAAGGGAACGGGAGCAGGCTAAGCTGCAGGCCGTGGAAGACGAGAAGAGG
GTGAAGCAGGAGGAGGAGGAGCGCGTGAGGGCGGTGGCGAGACAAGCCAA
GGCCGAGAGGGAGTCGTTGAAGAAGGAGACGCGGAGGCGAAAGAAGGTAC
GAGTGCTTTTGGTTTGTCTTTCACTA
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