mRNA_S-dermatodea_contig1204.1268.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1204.1268.1
Unique NamemRNA_S-dermatodea_contig1204.1268.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig1204.1268.1 vs. uniprot
Match: D8LR59_ECTSI (Triacylglycerol lipase, putative (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR59_ECTSI)

HSP 1 Score: 126 bits (316), Expect = 2.930e-30
Identity = 68/122 (55.74%), Postives = 90/122 (73.77%), Query Frame = 3
Query:    3 FELMCFIDHADTDTQVALWRDATNRRLVVAFRGTEAWKDVLTDANFLLDDLDRSGEVEQAKTIPVAAEEVMAAMRNTTSGWKKDRVQPLPETLGKQRDYLLQSMNKALESSKDLLKDLQSTT 368
            FE MCFID+ DTDTQV +WRD   +RLVV+FRGT   +D         +DLD SG V Q   +P A ++VMAA+R TT+GWKK+RVQP+P TL +Q+ ++L+SMNK L++S++LLKDLQ TT
Sbjct:  449 FEFMCFIDNHDTDTQVGVWRDEAKKRLVVSFRGTAQLED---------EDLDHSG-VTQRAVLP-AVDDVMAAVRETTAGWKKERVQPIPVTLAQQKVHMLESMNKLLDTSRELLKDLQDTT 559          
BLAST of mRNA_S-dermatodea_contig1204.1268.1 vs. uniprot
Match: A0A6H5KT38_9PHAE (C2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT38_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 2.210e-19
Identity = 58/127 (45.67%), Postives = 84/127 (66.14%), Query Frame = 3
Query:    3 FELMCFIDHADTDTQVA-----LWRDATNRRLVVAFRGTEAWKDVLTDANFLLDDLDRSGEVEQAKTIPVAAEEVMAAMRNTTSGWKKDRVQPLPETLGKQRDYLLQSMNKALESSKDLLKDLQSTT 368
            FE MCFID+ DTDTQ +       ++A  R L     G    +D     + + +DLD SG + +A  +P A ++VMAA+R TT+GWKK+RVQP+P TL +Q+ ++L+SMNK L++S+ LLKDL+ TT
Sbjct:  452 FEFMCFIDNHDTDTQASGGLARRGQEAYGRLL--PRHGAARGRDYGRQLSAVTEDLDHSGVIRRA-VLP-AVDDVMAAVRETTAGWKKERVQPIPVTLAQQKVHMLESMNKLLDTSRALLKDLKDTT 574          
BLAST of mRNA_S-dermatodea_contig1204.1268.1 vs. uniprot
Match: UPI001F5C11B4 (uncharacterized protein LOC124671575 n=2 Tax=Lolium rigidum TaxID=89674 RepID=UPI001F5C11B4)

HSP 1 Score: 69.7 bits (169), Expect = 1.360e-10
Identity = 31/49 (63.27%), Postives = 40/49 (81.63%), Query Frame = 3
Query:    3 FELMCFIDHADTDTQVALWRDATNRRLVVAFRGTEA--WKDVLTDANFL 143
            FE +CF+D+  TDTQVA+WRD++ RRLVVAFRGTE   WKD++TD N +
Sbjct:  580 FEKICFLDNGSTDTQVAIWRDSSRRRLVVAFRGTEQTRWKDLVTDLNLV 628          
BLAST of mRNA_S-dermatodea_contig1204.1268.1 vs. uniprot
Match: A0A6P4CD85_ARADU (uncharacterized protein LOC107474267 n=6 Tax=Arachis TaxID=3817 RepID=A0A6P4CD85_ARADU)

HSP 1 Score: 69.3 bits (168), Expect = 1.850e-10
Identity = 32/45 (71.11%), Postives = 38/45 (84.44%), Query Frame = 3
Query:    3 FELMCFIDHADTDTQVALWRDATNRRLVVAFRGTEA--WKDVLTD 131
            FE +CF+D+A TDTQVA+WRD+T RRLVVAFRGTE   WKD+ TD
Sbjct:  556 FEKICFLDNASTDTQVAIWRDSTRRRLVVAFRGTEQSQWKDLRTD 600          
BLAST of mRNA_S-dermatodea_contig1204.1268.1 vs. uniprot
Match: A0A7J7LNY3_9MAGN (C2 domain-containing protein n=1 Tax=Kingdonia uniflora TaxID=39325 RepID=A0A7J7LNY3_9MAGN)

HSP 1 Score: 68.9 bits (167), Expect = 2.600e-10
Identity = 31/45 (68.89%), Postives = 38/45 (84.44%), Query Frame = 3
Query:    3 FELMCFIDHADTDTQVALWRDATNRRLVVAFRGTEA--WKDVLTD 131
            FE +CF+D+  TDTQVA+WRD+T +RLVVAFRGTE   WKD+LTD
Sbjct:  458 FEKICFLDNTSTDTQVAIWRDSTQKRLVVAFRGTEQTRWKDLLTD 502          
BLAST of mRNA_S-dermatodea_contig1204.1268.1 vs. uniprot
Match: A0A8K0MTN4_9ROSA (Uncharacterized protein n=1 Tax=Rhamnella rubrinervis TaxID=2594499 RepID=A0A8K0MTN4_9ROSA)

HSP 1 Score: 68.6 bits (166), Expect = 3.660e-10
Identity = 31/45 (68.89%), Postives = 38/45 (84.44%), Query Frame = 3
Query:    3 FELMCFIDHADTDTQVALWRDATNRRLVVAFRGTEA--WKDVLTD 131
            FE +CF+D+A TDTQVA+WRD+T RRLV+AFRGTE   WKD+ TD
Sbjct:  579 FEKICFLDNATTDTQVAIWRDSTRRRLVIAFRGTEQARWKDLRTD 623          
BLAST of mRNA_S-dermatodea_contig1204.1268.1 vs. uniprot
Match: UPI0007753890 (uncharacterized protein LOC4336360 isoform X5 n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=UPI0007753890)

HSP 1 Score: 68.2 bits (165), Expect = 4.490e-10
Identity = 31/45 (68.89%), Postives = 37/45 (82.22%), Query Frame = 3
Query:    3 FELMCFIDHADTDTQVALWRDATNRRLVVAFRGTEA--WKDVLTD 131
            FE +CF+D+  TDTQVA+WRD + RRLVVAFRGTE   WKD+LTD
Sbjct:  426 FEKICFLDNVSTDTQVAIWRDCSRRRLVVAFRGTEQSKWKDLLTD 470          
BLAST of mRNA_S-dermatodea_contig1204.1268.1 vs. uniprot
Match: A0A0D9ZN08_9ORYZ (C2 domain-containing protein n=3 Tax=Oryza TaxID=4527 RepID=A0A0D9ZN08_9ORYZ)

HSP 1 Score: 68.2 bits (165), Expect = 4.660e-10
Identity = 31/45 (68.89%), Postives = 37/45 (82.22%), Query Frame = 3
Query:    3 FELMCFIDHADTDTQVALWRDATNRRLVVAFRGTEA--WKDVLTD 131
            FE +CF+D+  TDTQVA+WRD + RRLVVAFRGTE   WKD+LTD
Sbjct:  594 FEKICFLDNVSTDTQVAIWRDCSRRRLVVAFRGTEQSKWKDLLTD 638          
BLAST of mRNA_S-dermatodea_contig1204.1268.1 vs. uniprot
Match: A0A3B6B206_WHEAT (C2 domain-containing protein n=5 Tax=Triticum TaxID=4564 RepID=A0A3B6B206_WHEAT)

HSP 1 Score: 67.8 bits (164), Expect = 5.930e-10
Identity = 30/45 (66.67%), Postives = 38/45 (84.44%), Query Frame = 3
Query:    3 FELMCFIDHADTDTQVALWRDATNRRLVVAFRGTEA--WKDVLTD 131
            FE +CF+D+  TDTQVA+WRD++ RRLVVAFRGTE   WKD++TD
Sbjct:  578 FEKICFLDNVSTDTQVAIWRDSSRRRLVVAFRGTEQTRWKDLITD 622          
BLAST of mRNA_S-dermatodea_contig1204.1268.1 vs. uniprot
Match: A0A446L924_TRITD (C2 domain-containing protein n=2 Tax=Triticum TaxID=4564 RepID=A0A446L924_TRITD)

HSP 1 Score: 67.8 bits (164), Expect = 6.060e-10
Identity = 30/45 (66.67%), Postives = 38/45 (84.44%), Query Frame = 3
Query:    3 FELMCFIDHADTDTQVALWRDATNRRLVVAFRGTEA--WKDVLTD 131
            FE +CF+D+  TDTQVA+WRD++ RRLVVAFRGTE   WKD++TD
Sbjct:  412 FEKICFLDNVSTDTQVAIWRDSSRRRLVVAFRGTEQTRWKDLITD 456          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1204.1268.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LR59_ECTSI2.930e-3055.74Triacylglycerol lipase, putative (Partial) (Fragme... [more]
A0A6H5KT38_9PHAE2.210e-1945.67C2 domain-containing protein n=1 Tax=Ectocarpus sp... [more]
UPI001F5C11B41.360e-1063.27uncharacterized protein LOC124671575 n=2 Tax=Loliu... [more]
A0A6P4CD85_ARADU1.850e-1071.11uncharacterized protein LOC107474267 n=6 Tax=Arach... [more]
A0A7J7LNY3_9MAGN2.600e-1068.89C2 domain-containing protein n=1 Tax=Kingdonia uni... [more]
A0A8K0MTN4_9ROSA3.660e-1068.89Uncharacterized protein n=1 Tax=Rhamnella rubriner... [more]
UPI00077538904.490e-1068.89uncharacterized protein LOC4336360 isoform X5 n=1 ... [more]
A0A0D9ZN08_9ORYZ4.660e-1068.89C2 domain-containing protein n=3 Tax=Oryza TaxID=4... [more]
A0A3B6B206_WHEAT5.930e-1066.67C2 domain-containing protein n=5 Tax=Triticum TaxI... [more]
A0A446L924_TRITD6.060e-1066.67C2 domain-containing protein n=2 Tax=Triticum TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1204contigS-dermatodea_contig1204:1344..3717 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score125.6
Seed ortholog evalue2.4e-26
Seed eggNOG ortholog2880.D8LR59
EggNOG free text desc.phospholipase A1 activity
EggNOG OGsKOG4569@1,KOG4569@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size556
Cds size543
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1204.1268.1prot_S-dermatodea_contig1204.1268.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1204 1355..3717 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924228.3469899-UTR-S-dermatodea_contig1204:1343..13541622924228.3469899-UTR-S-dermatodea_contig1204:1343..1354Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1204 1344..1354 +
1694079109.2388313-UTR-S-dermatodea_contig1204:1343..13541694079109.2388313-UTR-S-dermatodea_contig1204:1343..1354Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1204 1344..1354 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924228.3564305-CDS-S-dermatodea_contig1204:1354..13901622924228.3564305-CDS-S-dermatodea_contig1204:1354..1390Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1204 1355..1390 +
1694079109.2503242-CDS-S-dermatodea_contig1204:1354..13901694079109.2503242-CDS-S-dermatodea_contig1204:1354..1390Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1204 1355..1390 +
1622924228.3649101-CDS-S-dermatodea_contig1204:2362..24611622924228.3649101-CDS-S-dermatodea_contig1204:2362..2461Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1204 2363..2461 +
1694079109.2674336-CDS-S-dermatodea_contig1204:2362..24611694079109.2674336-CDS-S-dermatodea_contig1204:2362..2461Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1204 2363..2461 +
1622924228.3749564-CDS-S-dermatodea_contig1204:2829..29771622924228.3749564-CDS-S-dermatodea_contig1204:2829..2977Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1204 2830..2977 +
1694079109.2774906-CDS-S-dermatodea_contig1204:2829..29771694079109.2774906-CDS-S-dermatodea_contig1204:2829..2977Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1204 2830..2977 +
1622924228.3826015-CDS-S-dermatodea_contig1204:3457..37171622924228.3826015-CDS-S-dermatodea_contig1204:3457..3717Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1204 3458..3717 +
1694079109.2855792-CDS-S-dermatodea_contig1204:3457..37171694079109.2855792-CDS-S-dermatodea_contig1204:3457..3717Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1204 3458..3717 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1204.1268.1

>prot_S-dermatodea_contig1204.1268.1 ID=prot_S-dermatodea_contig1204.1268.1|Name=mRNA_S-dermatodea_contig1204.1268.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=181bp
MCFIDHADTDTQVALWRDATNRRLVVAFRGTEAWKDVLTDANFLLDDLDR
SGEVEQAKTIPVAAEEVMAAMRNTTSGWKKDRVQPLPETLGKQRDYLLQS
MNKALESSKDLLKDLQSTTSTTSTAPSPPAKLPPGNQADSKQQQQQETNA
YDIDAKASGTGGEGAEASPGAASASRAKGIL
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mRNA from alignment at S-dermatodea_contig1204:1344..3717+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1204.1268.1 ID=mRNA_S-dermatodea_contig1204.1268.1|Name=mRNA_S-dermatodea_contig1204.1268.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2374bp|location=Sequence derived from alignment at S-dermatodea_contig1204:1344..3717+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CGTTCGAGCTGATGTGCTTCATCGATCACGCGGACACCGACACGCAGGTG GGTGTGCTTGTGTGCTCTGTTATTGTGGTGGTCGTGATATACGTATACTT CGAAGTATAGTGTGACTTCTACTGCCGTAAGATTCGCTTTTGTTCGATTG CGTGGCGTGGTATGAAAGGCGTGTATGTGTGTGTGTGTTTTTTTATGTTT TTTTGTGTCTTGTGTGTGGAGGTTGGTGCTTCAGCGTTTTCTGAGAGCGC CGACCGCACGGTGCGTAGCGAACAACCCGCGCAAACACACAAGCTCGCGA GGGCATGATCGTGCTCAGGCGCCTCACCTGTTCTCTGCATAGCGCTCCAG CTACGCTACAGCAGGACACTGCCAGCTGCTGCTAAAACATTTCGGCAGGG GCCCTATTTTTGTCATCGAGGCCGTGGCTCCCCCACAAGTAATCGAAACC AGCAACAGCATCCCGAGAGCATGTTGCTGCCGAGCGGGCGGTCCTCTTTG TGATCGGCCCTTTCCGTGGACCACGACTTCACGCTTAATTTATTTTCAGC AAGCAGGATGTTCAGCTACTGCTCGTGGTAATTCTCTATTCCCGGCTGTG TAAAAACCCAGCGGACACGTTTTTAAGGTACAGCTAGCACGCCGTATTGT TTAGGACGTCGATTTTGCCGCTCCTGTAGTCGATTCGTATAATTTTTTTT CTGGTGCTTCGTTGAGGTGCTTAGTTTTTTTTATTTTTACTCGAGACTAC GGACCTTAACAGAGCAGCCTCGGCTCGCCTTCCACCTCGGTGTCCGAGTT CACGCACGTCATATCGACAGTGCAAGGTCGGACCCTGCTCCGAAACGATT ATTAATAGCGTGGGGTCCATTTCGCTTCCAACTTTGCTGTCTACCTCAAG CAGAGCACACGAAAAACCTGCAGTTCAAGAAGTGGATTTGACTCAAACAC AAACGTTTTTTTCGTTTATGTTTGTACGGGTGTCTTTGTGTTTGCTGCCT GTGCAAAAAACAAATACAGGTCGCACTCTGGCGTGATGCAACCAACAGGC GGCTCGTCGTGGCCTTTCGGGGGACCGAAGCGTGGAAGGACGTGCTCACC GACGCCAACTTCCTCTTGGTGCGAGACTTTTCAGAGACCGGATGTCTCGA TTGCGCACCTCAAAAGAGTTCGTCACAACTCTAAGCTGTACGGCGGCAGA CGAGTGCTGCGGGAAATTATAATTAACAGCCACGCGGTAGCTGCGGAGGC GTGTATCTAGGACGGGTCTTCGGGATGATGCGCAGGATGCTGTGGCGCCT CGATTAAGCCCTGCAATGTGCTTTTCTTGTTACTCGTGCGTCCTCCTCCC GTTGTGTTGGCGCCAAAAAACCGAGCACCCTTTCTCGCACGATCTCGACG ACGCCGCGGTGCAAACCCCGTGCAGAAGATGTCATATCAACCATAGAGTG AGCTGCGGCACTTTCTCCCCACCCTTCCCCCCACAGGATGATCTCGACCG TTCGGGAGAGGTAGAGCAGGCGAAGACGATCCCGGTAGCTGCAGAGGAGG TAATGGCCGCGATGAGAAACACCACGTCTGGCTGGAAAAAGGACAGGGTG CAGCCGCTCCCCGAGACTCTCGGCAAGCAGCGAGGTACGTATTTCCCCGC ACAAAGTGTGTGCGATAGCAGCACAGTTTTTCGTTACACTGAGTGTGCAG ACGACGTGAACATACTACTGCTGTGGCTTCAACTGCAGCGTGTGGTTTTT AATAAATGCTCGATGGGGCTTAACAGGGGTTGGCGGACGAATGTGGGACC ATCTCGAGACGCCCAGCGGCTCTTGTTTTGTCGAGGTACCGGGCTGCAAT ATCCGAGAGGTGCCAAAATCATGGGTTCTCTGGCGCTGCGGCTAGACAGA ATGGTTAAAGCGTCTCGCAGGCACACCTTGGTTGACTCTGTTGAATGCCC TATGCGTAACTATCTAAACCTCCAGCCCGAACGCTTGCGGCACCGAGCAT TGCCTTGCGTGCGATTGTAACATCGACGGTAGCAATGCTATACTGTCGTC TCCCTGAGTGGCGCCTACTCGATTGTAACCCTCCCGTGCGTCTATCGCTC GCCGCCGCTATCAGACTACCTGCTTCAGTCAATGAACAAGGCGCTCGAGA GCAGCAAAGACCTCCTCAAGGATCTCCAGTCAACTACTTCTACAACTTCC ACGGCCCCTTCCCCCCCCGCGAAGCTACCGCCGGGAAATCAAGCGGACAG CAAGCAACAGCAACAGCAGGAAACTAACGCCTACGACATCGACGCGAAAG CAAGCGGCACAGGGGGAGAAGGGGCGGAAGCTTCGCCGGGGGCGGCGTCT GCATCGCGCGCGAAGGGCATCCTA
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Coding sequence (CDS) from alignment at S-dermatodea_contig1204:1344..3717+

>mRNA_S-dermatodea_contig1204.1268.1 ID=mRNA_S-dermatodea_contig1204.1268.1|Name=mRNA_S-dermatodea_contig1204.1268.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1086bp|location=Sequence derived from alignment at S-dermatodea_contig1204:1344..3717+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTGCTTCATCGATCACGCGGACACCGACACGCAGATGTGCTTCATCGA
TCACGCGGACACCGACACGCAGGTCGCACTCTGGCGTGATGCAACCAACA
GGCGGCTCGTCGTGGCCTTTCGGGGGACCGAAGCGTGGAAGGACGTGCTC
ACCGACGCCAACTTCCTCTTGGTCGCACTCTGGCGTGATGCAACCAACAG
GCGGCTCGTCGTGGCCTTTCGGGGGACCGAAGCGTGGAAGGACGTGCTCA
CCGACGCCAACTTCCTCTTGGATGATCTCGACCGTTCGGGAGAGGTAGAG
CAGGCGAAGACGATCCCGGTAGCTGCAGAGGAGGTAATGGCCGCGATGAG
AAACACCACGTCTGGCTGGAAAAAGGACAGGGTGCAGCCGCTCCCCGAGA
CTCTCGGCAAGCAGCGAGGATGATCTCGACCGTTCGGGAGAGGTAGAGCA
GGCGAAGACGATCCCGGTAGCTGCAGAGGAGGTAATGGCCGCGATGAGAA
ACACCACGTCTGGCTGGAAAAAGGACAGGGTGCAGCCGCTCCCCGAGACT
CTCGGCAAGCAGCGAGACTACCTGCTTCAGTCAATGAACAAGGCGCTCGA
GAGCAGCAAAGACCTCCTCAAGGATCTCCAGTCAACTACTTCTACAACTT
CCACGGCCCCTTCCCCCCCCGCGAAGCTACCGCCGGGAAATCAAGCGGAC
AGCAAGCAACAGCAACAGCAGGAAACTAACGCCTACGACATCGACGCGAA
AGCAAGCGGCACAGGGGGAGAAGGGGCGGAAGCTTCGCCGGGGGCGGCGT
CTGCATCGCGCGCGAAGGGCATCCTAACTACCTGCTTCAGTCAATGAACA
AGGCGCTCGAGAGCAGCAAAGACCTCCTCAAGGATCTCCAGTCAACTACT
TCTACAACTTCCACGGCCCCTTCCCCCCCCGCGAAGCTACCGCCGGGAAA
TCAAGCGGACAGCAAGCAACAGCAACAGCAGGAAACTAACGCCTACGACA
TCGACGCGAAAGCAAGCGGCACAGGGGGAGAAGGGGCGGAAGCTTCGCCG
GGGGCGGCGTCTGCATCGCGCGCGAAGGGCATCCTA
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