mRNA_S-dermatodea_contig12036.1265.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12036.1265.1
Unique NamemRNA_S-dermatodea_contig12036.1265.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig12036.1265.1 vs. uniprot
Match: D8LRH3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRH3_ECTSI)

HSP 1 Score: 351 bits (901), Expect = 1.140e-103
Identity = 244/467 (52.25%), Postives = 291/467 (62.31%), Query Frame = 3
Query:  780 RQEVDEHAARASDAATAALAAALASATMLPPSPRNAQ---PLQAPKK-------RKEECVAGAAAAXXXXXXXXXXXXXXXRGEGRAGRDPI-MMIFRVPQGRALPERVEPPDVDRALAAARFAPQQPPSSRGSIAGAFGAGVEIXXXXXXXXXXXXXXXXXTTSMPCMVGFFKVDDTTGVHRCAGTWAMTKTDLEAAARIESRASPFEFKTTVGGGAD-----FPHTGNYRGHFLVRQHPKPVTKVEEDELHLAFERNTGGGWNVNGSGRNVYGPFTITGRLGADRRLEVFRAYPKPSSRGHRRASTSSHPAPAPARAP-----------TSPAACVPNRGKHPHSAPPLVVAQAASPPAFANGA-SAMAEDAASLVSPAPTSRRVSRTPSYLIKDIGNDGTAHLTHGLRRCVTLLRSVMGVRGKSEWFLEPVDFVKLALVDYPRIIRRPMDLGTIRKKLEGGTYQ 2096
            RQEVDEHAARASDAA               P+PR A+   P ++P         + EE    A   XXXXXXXXXXXXXXX G G AGR    +M+FR PQGR+LP++    DV+RAL+AA F P +   + G      G G  +                 T SMPCMVGFFKVD+ TGVHRCAG WAM K DL+AA +  +RASPFEF+   GGGA      FPHTG Y+GHFLVRQ PKPV+KVEE +LH+AF +N+ GGWNV G G NVYG FTITGRL A+R LEV+RAY K +   HRRAS++     A A A            ++P    PNRGKH   A       A     F++G  SA A D+ S  +PAP SRRVSRTPS LI DIGNDGT HLTHGLRRCVT+L ++  +RGKSEWF EPVD+V L L +Y  II+RPMDLGT++ KLE G Y+
Sbjct:  320 RQEVDEHAARASDAAXXXXXXXXXXXXXXXPTPRPARASPPSKSPVPSQQQLLPKAEERGTAAXXXXXXXXXXXXXXXXXXSGGGSAGRHSTPLMVFRAPQGRSLPQKCSEADVERALSAAHFVPDRSSPAWG------GGGPPLPPPLPLP----------TGSMPCMVGFFKVDEKTGVHRCAGNWAMNKADLQAADK--NRASPFEFRMVEGGGAGTGVVRFPHTGKYQGHFLVRQPPKPVSKVEEKDLHIAFVKNSEGGWNVEGQGNNVYGAFTITGRLSANRELEVYRAYRKVAKAQHRRASST-----AGAGAXXXXXXXXXXXXSTPGLHGPNRGKHFSPA-------AVGGTGFSDGGGSAKAGDSGS-ETPAPPSRRVSRTPSKLINDIGNDGTTHLTHGLRRCVTVLNNLRAIRGKSEWFNEPVDYVGLNLPEYTTIIKRPMDLGTVKSKLESGEYK 755          
BLAST of mRNA_S-dermatodea_contig12036.1265.1 vs. uniprot
Match: A0A836CDK9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDK9_9STRA)

HSP 1 Score: 157 bits (398), Expect = 1.040e-36
Identity = 121/323 (37.46%), Postives = 160/323 (49.54%), Query Frame = 3
Query: 1242 MPCMVGFFKVDDTTGVHRCAGTWAMT-KTDLEAAARIESRASPFEFKTTVG-GGADFPHTGNYRGHFLVRQHPKPVTKVEEDELHLAFERNTGGGWNVNGSGRNVYGPFTITGRLGADRRLEVFRAY------PKPSSRGHR------RASTSSHPAPAPARAPTSPAACVPNRGKHPHSAPPLVVAQAAS--PPAFANGASAMAEDA------------ASLVSP--APTSRRVSRTPSYLIKDIGNDGTAHLTHGLRRCVTLLRSVMGVRGKSEWFLEPVDFVKLALVDYPRIIRRPMDLGTIRKK---------LEGGTY 2093
            +PCM G   V+  TG H   G W M+ K  L          SPFEF+     GG + P +G Y  HF+VR   KP  KV E+ + L F  N+GGGWNV GSG N +GPF + G L   R+LE+F+ Y      P     G R      RA+T   P  A A A ++ A  +P  G          V +A+S    + +NGA+ + ++A            A+ V P  AP  RR+SR PS+L  D G      L  GLR+CV LL+ +  V+  S WF +PVD V L L  Y  I++RPMDLGT++ K         LE G Y
Sbjct:   84 LPCMRGVLAVEANTGDHVVTGWWGMSSKAHLPG-----GETSPFEFRRGARPGGEEVPASGEYAAHFMVRMPGKPADKVHENGMQLTFTVNSGGGWNVEGSGTNKFGPFNLLGTLDGQRQLELFKIYTIRAAAPSTQKTGKRPTPVKRRAATGISPPVATADATSTKAPMLPPPGVGXXX---XXVRRASSFFDDSTSNGATQVPDEAQFEAPPGGDAKVAAGVGPDGAPLRRRISRLPSHLQDDRGQ---VRLPEGLRKCVNLLKQISTVKNLSHWFRDPVDPVALNLPTYLTIVKRPMDLGTVKAKRLSRIGSTHLEAGEY 395          
BLAST of mRNA_S-dermatodea_contig12036.1265.1 vs. uniprot
Match: A0A7S3GWX5_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GWX5_9STRA)

HSP 1 Score: 107 bits (266), Expect = 2.790e-20
Identity = 98/303 (32.34%), Postives = 138/303 (45.54%), Query Frame = 3
Query: 1296 CAGTWAMTKTDLEAAARIESRASPFEFKTTVGG--GADFPHTGNYRGHFLVRQHP--KPVTKVEEDELHLAFERNTG--GGWNVNGSGRNVYGPFTITGRLGADRRLEVFRAY----PKPSSRGHRRAST---SSHPAPAPARAPTSPAACVPNRGKHPHSAPPL------------VVAQAASPPAFANGA-----SAMAEDAASLVSPAPTSRRVSRTPSY-------LIKDIGNDGTAHLTHGLRRCVTLLRSVMGVRGKSEWFLEPVDFVKLALVDYPRIIRRPMDLGTIRKKLEGGTY 2093
            C G W M+    + A    ++ S FEFK        + FP  G Y+GHF ++Q P  K   KVE+ E+   F R+    G + +NG+G N +G FT+ G L  D  L V+R Y    P P +   RR S    S  P     R+     A     G+     PP+            V  Q+ +   +A  A     S     A   V PAP S +  +TPS        + +D  +D    L+  L++C  LL+  M  +  + WFLEPVD+V+  + DYP II  PMD  TIRK++EG  Y
Sbjct:   85 CKGAWGMS----DYAHNFPAQLSEFEFKLVKADEDSSLFPVNGRYQGHFYLKQAPPLKGSVKVEDKEMVFKFVRSEDVEGQYMINGNGLNKFGSFTLKGTLSEDGDLHVYREYYNLTPLPGTHVKRRLSIDGDSEGP-----RSKKKALAVKAGTGEDIIPLPPMDPNVSPREGAGRVRKQSLAMKEYAETAVKAPTSVPKPAATPKVEPAPLSLKQPKTPSQQAAPVPLMRQDSSSDRAHRLSFPLKKCSELLKE-MSKQPHAAWFLEPVDYVRFNIPDYPLIISTPMDFSTIRKRIEGSLY 377          
BLAST of mRNA_S-dermatodea_contig12036.1265.1 vs. uniprot
Match: A0A7S2GBV0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2GBV0_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 3.800e-9
Identity = 31/82 (37.80%), Postives = 52/82 (63.41%), Query Frame = 3
Query: 1851 RVSRTPSYLIKDIGNDGTAHLTHGLRRCVTLLRSVMGVRGKSEWFLEPVDFVKLALVDYPRIIRRPMDLGTIRKKLEGGTYQ 2096
            R+ R PS+L +   ++    L   +R+C+  L+ +MG +  + WF E VD+V L ++DYP I++ PMDLGT++K +E G  +
Sbjct:  167 RIRRLPSHLKEQPDDEQQVRLNEHMRKCLQTLKHLMG-QPNAHWFNERVDYVALGILDYPTIVKNPMDLGTVKKNIETGLIE 247          
BLAST of mRNA_S-dermatodea_contig12036.1265.1 vs. uniprot
Match: A0A485L658_9STRA (Aste57867_15482 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L658_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 6.660e-9
Identity = 94/355 (26.48%), Postives = 145/355 (40.85%), Query Frame = 3
Query: 1233 TTSMPCMVGFFKVDDTTGVHRCAGTWAMTKTDL------------------------------------EAAARIESRASPFEFKTTVGGGADFPHTGNYRGHF-LVRQHPKPVTKVEEDELHLAFER-NTGGGWNVNGSGRNVYGPFTITGRLG-ADRRLEVFRAY-PKPSSRGHRRASTSSHPAPAPARAPTSPAACVPNRGKHPHS-----------------------APPLVVAQAASPPAFA---NGASAMAEDAASLVSPAPTSRRVSRTPSYLIKDIGNDGTAHLTH--GLRRCVTLLRSVMGVRGKSEWFLEPVDFVKLALVDYPRIIRRPMDLGTIRKKLEGGTY 2093
            TT  P ++G ++VD+  GV    G WAMT+ +                                      A    E+RASP   +  +    + P    + G F ++    KP T  E+D L L F++ +    + V G+G N +G FT+ G L  A + L +++AY PK  +   +R      P     R+   P+  +    K P                         A P+ V       AF    NG S+ + D  S  +   +SR  S     L   +  +G A L     +R+C  +L++++G   K+  FL PVD V L + DY ++I+ PMDLGT+R  LE G Y
Sbjct:   99 TTQCPLLLGSYRVDEN-GVALWTGRWAMTEAEYATGITSLFEMYSSKPLSSTRLLHHNQSDPLNNLQGESATDEDENRASPVPAEKVMTAKGECPIERKFDGFFQILTVKGKPATIPEKDVL-LTFQKCDIDNVFTVRGTGENRFGVFTLQGVLDEASQELRLYKAYKPKDKTPVAKRTRPKDPP-----RSTMEPSVKLEKVEKTPKKQKVXXXXAEKFESINPAEMTTTLAAPVAVDFTHVSKAFGMPTNGTSSSSYDRPSSSN---SSRHRSERKRSLPAHLREEGLAELERMPAMRKCHNILKNLVG-NAKAVPFLIPVDPVALGIPDYFKVIKEPMDLGTVRGNLENGVY 442          
BLAST of mRNA_S-dermatodea_contig12036.1265.1 vs. uniprot
Match: D8R369_SELML (Uncharacterized protein n=8 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8R369_SELML)

HSP 1 Score: 66.6 bits (161), Expect = 1.180e-7
Identity = 34/59 (57.63%), Postives = 44/59 (74.58%), Query Frame = 3
Query: 1923 LRRCVTLLRSVMGVRGKSEW-FLEPVDFVKLALVDYPRIIRRPMDLGTIRKKLEGGTYQ 2096
            +++C TLL+ +  +  K  W F EPVD VKL L DY ++IRRPMDLGTI+KKLEGG Y+
Sbjct:  114 MKQCGTLLKKL--ITHKHAWVFNEPVDAVKLGLHDYHKVIRRPMDLGTIKKKLEGGHYR 170          
BLAST of mRNA_S-dermatodea_contig12036.1265.1 vs. uniprot
Match: A0A3R7B7T7_9STRA (Uncharacterized protein n=8 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7B7T7_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 2.820e-7
Identity = 83/289 (28.72%), Postives = 131/289 (45.33%), Query Frame = 3
Query: 1290 HRCAGTWAMTKTDLEAAARIESRASPFEF-KTTVGGGADFPHTGNYRGHF-LVRQHPKPVTKVEEDELHLAFER-NTGGGWNVNGSGRNVYGPFTITGRLG-ADRRLEVFRAY-PKPSSRGHRRASTSSHPAPAPARAPTSPAACVPNRGKH-----PHSAPPLVVAQAASPPAFANGASAMAEDAASLVSPAPT---------SRRVSRTPSYLIKDIGNDGTAHLTH--GLRRCVTLLRSVMGVRGKSEWFLEPVDFVKLALVDYPRIIRRPMDLGTIRKKLEGGTY 2093
            H   G  A   TD +     E+RASP    K+T  G    P    + G F ++    KP T + E ++ L F++ +    + V G+G N +G FT+ G L    + L +++AY PK  +   +R    + P      A T+     P++ +       +  P  + +  A+  A      + A  AA   + APT         +R  S     L   +  +G A L     +R+C  +L++++    KS  FL PVD V LA+ DY ++I+ PMDLGT+R  LE G Y
Sbjct: 1211 HNNNGLHAENATDED-----ENRASPLASDKSTTKGSC--PIERKFDGFFQILTMKGKPAT-IPEKDVSLTFQKCDMDNVYLVRGTGENRFGVFTLQGLLDETSQELRLYKAYKPKDKTPVAKRTRPKAEPV-VKVEAQTAHVEKTPSKKQKVKVEPAYPIPQSITSSLATSVAVDFAYVSKALGAAPTTTSAPTISYERMSNAARHRSERKRSLPAHLREEGLAELERVPAMRKCHNILKNLI-TNPKSVPFLVPVDPVALAIPDYFKVIKEPMDLGTVRGNLENGVY 1489          
BLAST of mRNA_S-dermatodea_contig12036.1265.1 vs. uniprot
Match: W4H4J0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H4J0_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 2.870e-7
Identity = 84/289 (29.07%), Postives = 132/289 (45.67%), Query Frame = 3
Query: 1290 HRCAGTWAMTKTDLEAAARIESRASPFEF-KTTVGGGADFPHTGNYRGHF-LVRQHPKPVTKVEEDELHLAFER-NTGGGWNVNGSGRNVYGPFTITGRLG-ADRRLEVFRAY-PKPSSRGHRRASTSSHPAPAPARAPTSPAACVPNRGKHPHSAP----PLVVAQAASPPAFANGAS-AMAEDAASLVSPAPT---------SRRVSRTPSYLIKDIGNDGTAHLTH--GLRRCVTLLRSVMGVRGKSEWFLEPVDFVKLALVDYPRIIRRPMDLGTIRKKLEGGTY 2093
            H   G  A   TD +     E+RASP    K+T  G    P    + G F ++    KP T + E ++ L F++ +    + V G+G N +G FT+ G L    + L +++AY PK  +   +R    + P      A T+     P++ +     P    P  +  + +P    + A  + A  AA   + APT         +R  S     L   +  +G A L     +R+C  +L++++    KS  FL PVD V LA+ DY ++I+ PMDLGT+R  LE G Y
Sbjct:  205 HNNNGLHAENATDED-----ENRASPLASDKSTTKGSC--PIERKFDGFFQILTMKGKPAT-IPEKDVSLTFQKCDMDNVYLVRGTGENRFGVFTLQGLLDETSQELRLYKAYKPKDKTPVAKRTRPKAEPV-VKVEAQTAHVEKTPSKKQKVKVEPAYPIPQSITSSLAPSVAVDFAYVSKALGAAPTTTSAPTISYERMSNAARHRSERKRSLPAHLREEGLAELERVPAMRKCHNILKNLI-TNPKSVPFLVPVDPVALAIPDYFKVIKEPMDLGTVRGNLENGVY 483          
BLAST of mRNA_S-dermatodea_contig12036.1265.1 vs. uniprot
Match: W4H2D5_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H2D5_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 3.150e-7
Identity = 84/289 (29.07%), Postives = 132/289 (45.67%), Query Frame = 3
Query: 1290 HRCAGTWAMTKTDLEAAARIESRASPFEF-KTTVGGGADFPHTGNYRGHF-LVRQHPKPVTKVEEDELHLAFER-NTGGGWNVNGSGRNVYGPFTITGRLG-ADRRLEVFRAY-PKPSSRGHRRASTSSHPAPAPARAPTSPAACVPNRGKHPHSAP----PLVVAQAASPPAFANGAS-AMAEDAASLVSPAPT---------SRRVSRTPSYLIKDIGNDGTAHLTH--GLRRCVTLLRSVMGVRGKSEWFLEPVDFVKLALVDYPRIIRRPMDLGTIRKKLEGGTY 2093
            H   G  A   TD +     E+RASP    K+T  G    P    + G F ++    KP T + E ++ L F++ +    + V G+G N +G FT+ G L    + L +++AY PK  +   +R    + P      A T+     P++ +     P    P  +  + +P    + A  + A  AA   + APT         +R  S     L   +  +G A L     +R+C  +L++++    KS  FL PVD V LA+ DY ++I+ PMDLGT+R  LE G Y
Sbjct:  211 HNNNGLHAENATDED-----ENRASPLASDKSTTKGSC--PIERKFDGFFQILTMKGKPAT-IPEKDVSLTFQKCDMDNVYLVRGTGENRFGVFTLQGLLDETSQELRLYKAYKPKDKTPVAKRTRPKAEPV-VKVEAQTAHVEKTPSKKQKVKVEPAYPIPQSITSSLAPSVAVDFAYVSKALGAAPTTTSAPTISYERMSNAARHRSERKRSLPAHLREEGLAELERVPAMRKCHNILKNLI-TNPKSVPFLVPVDPVALAIPDYFKVIKEPMDLGTVRGNLENGVY 489          
BLAST of mRNA_S-dermatodea_contig12036.1265.1 vs. uniprot
Match: W4H4I6_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H4I6_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 3.150e-7
Identity = 84/289 (29.07%), Postives = 132/289 (45.67%), Query Frame = 3
Query: 1290 HRCAGTWAMTKTDLEAAARIESRASPFEF-KTTVGGGADFPHTGNYRGHF-LVRQHPKPVTKVEEDELHLAFER-NTGGGWNVNGSGRNVYGPFTITGRLG-ADRRLEVFRAY-PKPSSRGHRRASTSSHPAPAPARAPTSPAACVPNRGKHPHSAP----PLVVAQAASPPAFANGAS-AMAEDAASLVSPAPT---------SRRVSRTPSYLIKDIGNDGTAHLTH--GLRRCVTLLRSVMGVRGKSEWFLEPVDFVKLALVDYPRIIRRPMDLGTIRKKLEGGTY 2093
            H   G  A   TD +     E+RASP    K+T  G    P    + G F ++    KP T + E ++ L F++ +    + V G+G N +G FT+ G L    + L +++AY PK  +   +R    + P      A T+     P++ +     P    P  +  + +P    + A  + A  AA   + APT         +R  S     L   +  +G A L     +R+C  +L++++    KS  FL PVD V LA+ DY ++I+ PMDLGT+R  LE G Y
Sbjct:  211 HNNNGLHAENATDED-----ENRASPLASDKSTTKGSC--PIERKFDGFFQILTMKGKPAT-IPEKDVSLTFQKCDMDNVYLVRGTGENRFGVFTLQGLLDETSQELRLYKAYKPKDKTPVAKRTRPKAEPV-VKVEAQTAHVEKTPSKKQKVKVEPAYPIPQSITSSLAPSVAVDFAYVSKALGAAPTTTSAPTISYERMSNAARHRSERKRSLPAHLREEGLAELERVPAMRKCHNILKNLI-TNPKSVPFLVPVDPVALAIPDYFKVIKEPMDLGTVRGNLENGVY 489          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12036.1265.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRH3_ECTSI1.140e-10352.25Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CDK9_9STRA1.040e-3637.46Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3GWX5_9STRA2.790e-2032.34Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S2GBV0_9STRA3.800e-937.80Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A485L658_9STRA6.660e-926.48Aste57867_15482 protein n=1 Tax=Aphanomyces stella... [more]
D8R369_SELML1.180e-757.63Uncharacterized protein n=8 Tax=Selaginella moelle... [more]
A0A3R7B7T7_9STRA2.820e-728.72Uncharacterized protein n=8 Tax=Aphanomyces astaci... [more]
W4H4J0_9STRA2.870e-729.07Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
W4H2D5_9STRA3.150e-729.07Uncharacterized protein n=3 Tax=Aphanomyces astaci... [more]
W4H4I6_9STRA3.150e-729.07Uncharacterized protein n=3 Tax=Aphanomyces astaci... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12036contigS-dermatodea_contig12036:655..3755 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score357.8
Seed ortholog evalue9.2e-96
Seed eggNOG ortholog2880.D8LRH3
KEGG koko:K11684
EggNOG free text desc.acetylation-dependent protein binding
EggNOG OGsCOG5076@1,KOG1474@2759
COG Functional cat.BK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionBromodomain and extraterminal protein
Ec32 orthologEc-18_004520.1
Exons4
Model size2096
Cds size1722
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12036.1265.1prot_S-dermatodea_contig12036.1265.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12036 655..3381 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924228.1871552-CDS-S-dermatodea_contig12036:654..15781622924228.1871552-CDS-S-dermatodea_contig12036:654..1578Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12036 655..1578 -
1694079109.1123605-CDS-S-dermatodea_contig12036:654..15781694079109.1123605-CDS-S-dermatodea_contig12036:654..1578Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12036 655..1578 -
1622924228.1957717-CDS-S-dermatodea_contig12036:1635..20911622924228.1957717-CDS-S-dermatodea_contig12036:1635..2091Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12036 1636..2091 -
1694079109.1353803-CDS-S-dermatodea_contig12036:1635..20911694079109.1353803-CDS-S-dermatodea_contig12036:1635..2091Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12036 1636..2091 -
1622924228.203368-CDS-S-dermatodea_contig12036:2295..25211622924228.203368-CDS-S-dermatodea_contig12036:2295..2521Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12036 2296..2521 -
1694079109.1529162-CDS-S-dermatodea_contig12036:2295..25211694079109.1529162-CDS-S-dermatodea_contig12036:2295..2521Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12036 2296..2521 -
1622924228.2128434-CDS-S-dermatodea_contig12036:3265..33811622924228.2128434-CDS-S-dermatodea_contig12036:3265..3381Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12036 3266..3381 -
1694079109.1630821-CDS-S-dermatodea_contig12036:3265..33811694079109.1630821-CDS-S-dermatodea_contig12036:3265..3381Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12036 3266..3381 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924228.2201529-UTR-S-dermatodea_contig12036:3381..37551622924228.2201529-UTR-S-dermatodea_contig12036:3381..3755Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12036 3382..3755 -
1694079109.175889-UTR-S-dermatodea_contig12036:3381..37551694079109.175889-UTR-S-dermatodea_contig12036:3381..3755Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12036 3382..3755 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12036.1265.1

>prot_S-dermatodea_contig12036.1265.1 ID=prot_S-dermatodea_contig12036.1265.1|Name=mRNA_S-dermatodea_contig12036.1265.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=574bp
MAATSTTWGLGTHKMTADISSSAPVTSPSAADSPIKAKSFSVMEGPSKES
QVSSASPAVVPHSSSSNGNSSTSGNSNNSTTGATAAAATAAAAAAVAAAA
TSAKLTASSNGIGRPTLSAGGNAGNGHAVAPAPAPRQEVDEHAARASDAA
TAALAAALASATMLPPSPRNAQPLQAPKKRKEECVAGAAAASAVKAAVSA
GAAAGGRGEGRAGRDPIMMIFRVPQGRALPERVEPPDVDRALAAARFAPQ
QPPSSRGSIAGAFGAGVEIDVAASPSPPLPEPTPLPTTSMPCMVGFFKVD
DTTGVHRCAGTWAMTKTDLEAAARIESRASPFEFKTTVGGGADFPHTGNY
RGHFLVRQHPKPVTKVEEDELHLAFERNTGGGWNVNGSGRNVYGPFTITG
RLGADRRLEVFRAYPKPSSRGHRRASTSSHPAPAPARAPTSPAACVPNRG
KHPHSAPPLVVAQAASPPAFANGASAMAEDAASLVSPAPTSRRVSRTPSY
LIKDIGNDGTAHLTHGLRRCVTLLRSVMGVRGKSEWFLEPVDFVKLALVD
YPRIIRRPMDLGTIRKKLEGGTYQ
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mRNA from alignment at S-dermatodea_contig12036:655..3755-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12036.1265.1 ID=mRNA_S-dermatodea_contig12036.1265.1|Name=mRNA_S-dermatodea_contig12036.1265.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3101bp|location=Sequence derived from alignment at S-dermatodea_contig12036:655..3755- (Saccorhiza dermatodea SderLu1190fm monoicous)
CCTCGGGCGCGCGTGACCCCCAGGTCGTGAAGGACGCCCGCCGTCCCCCC CAAGCAGGGGCCCGTGCGCGGTTGCATTATTTTTGCGGCCTTTCGCGCGA GTTCACGATTTGAGGCTGGGCGGGGCCTTGTCCTCACGAAAGCGGGGTGA CGGCAAATTTTTGGTGTTCGGTCTCTCTAGGGCGACGCTTCGCTTGAGAG TCTCGACTTTCGTCCCGGGAGAGCGCCTTCTGCGCCTGCGAGCGAGACCG GACTCGACACGCCGAGGGAAGGGCAAGGCCTACAGGCAACCGACGCTCGC GGTCGATCCCCGGCATCGCGGTGGGCAGAGCTGTCCAAAACCGCGTTGTT CGCCTCTCGCCGGTCCAGCCGGTGATGGCAGCGACGTCCACAACCTGGGG ACTCGGCACGCACAAGATGACAGCGGATATCTCGTCGTCGGCCCCCGTAA CGAGTCCCTCGGCCGCCGATTCTCCGATCAAGGCCAAGAGGTGAGCGGCC CCCGTCCCTCGTGTGCGAGCGCCCGCTCGCCCTCGCGTGCGCGCGTACGA GTGCGCGTCCGCGCCGCGCTCTTTGTGCCCTCCACAACGATCTGCCGATC TCCCATGTGCGAGTTTTGAGTTTGTTTTTTGCGTGCCTATTTTTTTGCTC CTTTGATGTCTAACATTCTGAGTGTGTGCGTTATCCGAGAGAAGGCGGCC TGGGGAGGTGGATTATATGTTGTTAATATATTAATAGTATTTTGGGGGGG GGCATTCGGGCGCGAGTTGGGAGTGTGGTGATGCCAGGGCAAGCGAGCAG CAGCGGATAGCCTCGATGTGTTTGCTCCAGCGTGGGTCGCGTGAGCGTGG CACACGTGTGGACGCGTGGCACGATCGTTTGCACCCTTCCGCGATTCGTT TCGGGCGGAGGAGAAGATCAGAGCTCACCACCGAAGTTTTTTTTCGAGTT TGAACGTTTCGCGCGGTCCTGTGTTTCTGTGTGTTTCCCGCCTCAGTTTA TTTTTTATTTTTGCATCGTCCCTGGTATCCTCCTCGTACTATCATATGTC TTGTGACGCTGTCAACAACTGGTGTACTGATTCGGGGCTGCTCCCCCTCT TCACTCAGTCCTTTTGATTTATCTTCCTTGTGTGATTATTGGTCGTGCCC CCGCCCCGCACAACGCCCTCTCCATTGAGACCCGCGTACGCCTTACCTCG TCTTCCTTGCCTTGCTGTACCTTTTGCATTGCAGCTTCAGCGTAATGGAA GGCCCAAGCAAAGAGTCTCAGGTGTCGTCCGCGTCGCCAGCAGTCGTACC ACACTCGAGCTCTTCGAATGGCAACAGCAGCACCAGCGGCAATAGTAACA ACAGCACGACCGGAGCGACGGCTGCCGCGGCTACAGCAGCAGCAGCCGCC GCCGTGGCCGCCGCAGCTACCTCGGCGAAGCTCACGGCCAGCTCGAACGG AATAGGGAGGGTGCCAGCTTTGGTAGCTGCGCCTGACACGGTGACGGGCG GTGCGGACGAAGAGGGCTCGGAAGCAGCGGCAACCAGCTCCGACTCTGGG GGAGACGACGACGAGGATGAGCGGGGGGGAAGCTCTAGCGCTCCGGGAAG GGTCGAGAGCGAAGCAGGAGGAGCGAAAGCGGCGCAGGCGAACGGACACC ACGGGCCGGTCCAGCCAACTTTGTCGGCGGGAGGCAACGCCGGCAACGGA CACGCGGTCGCGCCGGCGCCGGCTCCGAGGCAGGAGGTGGACGAGCATGC TGCACGAGCGTCGGACGCCGCTACGGCGGCGCTCGCCGCCGCCCTCGCAT CCGCGACGATGCTCCCTCCCTCCCCGCGCAACGCGCAGCCCTTGCAGGCA CCCAAGAAGCGCAAGGAAGAGTGCGTGGCGGGCGCGGCGGCGGCGAGTGC GGTGAAGGCGGCTGTTTCGGCTGGGGCGGCGGCGGGGGGGAGGGGGGAAG GGCGAGCAGGGAGAGATCCCATCATGATGATTTTCAGGGTGCCTCAGGGG AGAGCCCTGCCAGAGAGAGTCGAGCCGCCGGACGTGGATCGCGCTCTGGC TGCCGCGCGCTTCGCACCTCAGCAACCTCCATCCTCTCGGGGCTCGATCG CGGGTGCTTTCGGGGCCGGAGTTCGCGCGGGGGGGGGGGTTGCTGCTTCT GCTGGTGGTGCATCGAGCGCGATGAAGGTCGAAATCGATGTGGCCGCGTC GCCGTCGCCGCCGCTGCCGGAGCCAACGCCGTTGCCAACGACTTCGATGC CGTGCATGGTGGGGTTCTTCAAAGTTGATGACACCACGGGAGTGCACCGC TGCGCGGGTACATGGGCGATGACGAAGACCGACCTCGAGGCTGCCGCGAG GATCGAGTCTCGCGCGAGTCCGTTCGAATTCAAAACCACGGTGGGCGGGG GCGCGGATTTTCCTCACACGGGCAATTACCGGGGGCATTTCCTCGTGCGA CAACACCCGAAGCCGGTCACGAAGGTGGAGGAGGACGAGCTCCACCTGGC GTTCGAGAGGAACACCGGCGGGGGCTGGAACGTGAACGGCAGCGGCCGCA ACGTGTACGGCCCCTTCACGATCACGGGCCGCCTCGGCGCAGATCGCCGC CTGGAGGTCTTCCGCGCGTACCCGAAACCGTCCTCGAGAGGGCACCGCCG CGCCAGCACCAGCTCGCACCCTGCGCCGGCGCCGGCGAGAGCGCCTACGT CGCCGGCTGCGTGCGTCCCTAACCGCGGCAAGCACCCGCACTCGGCTCCG CCGCTCGTTGTTGCGCAGGCTGCGTCGCCACCTGCGTTTGCGAATGGAGC GTCGGCGATGGCGGAGGACGCGGCCAGCTTGGTGTCTCCGGCGCCGACTA GCCGGAGAGTAAGCCGCACGCCGTCGTACCTCATCAAGGACATCGGGAAC GATGGTACGGCGCACTTGACGCACGGGCTGCGGCGGTGCGTGACGCTACT GAGGAGCGTTATGGGGGTTAGGGGGAAGAGCGAGTGGTTCTTAGAGCCGG TGGACTTTGTGAAGCTGGCTCTCGTGGACTACCCTCGAATTATCAGGCGG CCGATGGATCTCGGCACCATTCGGAAAAAGCTGGAGGGGGGAACGTATCA G
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Coding sequence (CDS) from alignment at S-dermatodea_contig12036:655..3755-

>mRNA_S-dermatodea_contig12036.1265.1 ID=mRNA_S-dermatodea_contig12036.1265.1|Name=mRNA_S-dermatodea_contig12036.1265.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=3444bp|location=Sequence derived from alignment at S-dermatodea_contig12036:655..3755- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCAGCGACGTCCACAACCTGGGGACTCGGCACGCACAAGATGACAGC
GGATATCTCGTCGTCGGCCCCCGTAACGAGTCCCTCGGCCGCCGATTCTC
CGATCAAGGCCAAGAGATGGCAGCGACGTCCACAACCTGGGGACTCGGCA
CGCACAAGATGACAGCGGATATCTCGTCGTCGGCCCCCGTAACGAGTCCC
TCGGCCGCCGATTCTCCGATCAAGGCCAAGAGCTTCAGCGTAATGGAAGG
CCCAAGCAAAGAGTCTCAGGTGTCGTCCGCGTCGCCAGCAGTCGTACCAC
ACTCGAGCTCTTCGAATGGCAACAGCAGCACCAGCGGCAATAGTAACAAC
AGCACGACCGGAGCGACGGCTGCCGCGGCTACAGCAGCAGCAGCCGCCGC
CGTGGCCGCCGCAGCTACCTCGGCGAAGCTCACGGCCAGCTCGAACGGAA
TAGGGAGGCTTCAGCGTAATGGAAGGCCCAAGCAAAGAGTCTCAGGTGTC
GTCCGCGTCGCCAGCAGTCGTACCACACTCGAGCTCTTCGAATGGCAACA
GCAGCACCAGCGGCAATAGTAACAACAGCACGACCGGAGCGACGGCTGCC
GCGGCTACAGCAGCAGCAGCCGCCGCCGTGGCCGCCGCAGCTACCTCGGC
GAAGCTCACGGCCAGCTCGAACGGAATAGGGAGGCCAACTTTGTCGGCGG
GAGGCAACGCCGGCAACGGACACGCGGTCGCGCCGGCGCCGGCTCCGAGG
CAGGAGGTGGACGAGCATGCTGCACGAGCGTCGGACGCCGCTACGGCGGC
GCTCGCCGCCGCCCTCGCATCCGCGACGATGCTCCCTCCCTCCCCGCGCA
ACGCGCAGCCCTTGCAGGCACCCAAGAAGCGCAAGGAAGAGTGCGTGGCG
GGCGCGGCGGCGGCGAGTGCGGTGAAGGCGGCTGTTTCGGCTGGGGCGGC
GGCGGGGGGGAGGGGGGAAGGGCGAGCAGGGAGAGATCCCATCATGATGA
TTTTCAGGGTGCCTCAGGGGAGAGCCCTGCCAGAGAGAGTCGAGCCGCCG
GACGTGGATCGCGCTCTGGCTGCCGCGCGCTTCGCACCTCAGCAACCTCC
ATCCTCTCGGGGCTCGATCGCGGGTGCTTTCGGGGCCGGACCAACTTTGT
CGGCGGGAGGCAACGCCGGCAACGGACACGCGGTCGCGCCGGCGCCGGCT
CCGAGGCAGGAGGTGGACGAGCATGCTGCACGAGCGTCGGACGCCGCTAC
GGCGGCGCTCGCCGCCGCCCTCGCATCCGCGACGATGCTCCCTCCCTCCC
CGCGCAACGCGCAGCCCTTGCAGGCACCCAAGAAGCGCAAGGAAGAGTGC
GTGGCGGGCGCGGCGGCGGCGAGTGCGGTGAAGGCGGCTGTTTCGGCTGG
GGCGGCGGCGGGGGGGAGGGGGGAAGGGCGAGCAGGGAGAGATCCCATCA
TGATGATTTTCAGGGTGCCTCAGGGGAGAGCCCTGCCAGAGAGAGTCGAG
CCGCCGGACGTGGATCGCGCTCTGGCTGCCGCGCGCTTCGCACCTCAGCA
ACCTCCATCCTCTCGGGGCTCGATCGCGGGTGCTTTCGGGGCCGGAGTCG
AAATCGATGTGGCCGCGTCGCCGTCGCCGCCGCTGCCGGAGCCAACGCCG
TTGCCAACGACTTCGATGCCGTGCATGGTGGGGTTCTTCAAAGTTGATGA
CACCACGGGAGTGCACCGCTGCGCGGGTACATGGGCGATGACGAAGACCG
ACCTCGAGGCTGCCGCGAGGATCGAGTCTCGCGCGAGTCCGTTCGAATTC
AAAACCACGGTGGGCGGGGGCGCGGATTTTCCTCACACGGGCAATTACCG
GGGGCATTTCCTCGTGCGACAACACCCGAAGCCGGTCACGAAGGTGGAGG
AGGACGAGCTCCACCTGGCGTTCGAGAGGAACACCGGCGGGGGCTGGAAC
GTGAACGGCAGCGGCCGCAACGTGTACGGCCCCTTCACGATCACGGGCCG
CCTCGGCGCAGATCGCCGCCTGGAGGTCTTCCGCGCGTACCCGAAACCGT
CCTCGAGAGGGCACCGCCGCGCCAGCACCAGCTCGCACCCTGCGCCGGCG
CCGGCGAGAGCGCCTACGTCGCCGGCTGCGTGCGTCCCTAACCGCGGCAA
GCACCCGCACTCGGCTCCGCCGCTCGTTGTTGCGCAGGCTGCGTCGCCAC
CTGCGTTTGCGAATGGAGCGTCGGCGATGGCGGAGGACGCGGCCAGCTTG
GTGTCTCCGGCGCCGACTAGCCGGAGAGTAAGCCGCACGCCGTCGTACCT
CATCAAGGACATCGGGAACGATGGTACGGCGCACTTGACGCACGGGCTGC
GGCGGTGCGTGACGCTACTGAGGAGCGTTATGGGGGTTAGGGGGAAGAGC
GAGTGGTTCTTAGAGCCGGTGGACTTTGTGAAGCTGGCTCTCGTGGACTA
CCCTCGAATTATCAGGCGGCCGATGGATCTCGGCACCATTCGGAAAAAGC
TGGAGGGGGGAACGTATCAGGTCGAAATCGATGTGGCCGCGTCGCCGTCG
CCGCCGCTGCCGGAGCCAACGCCGTTGCCAACGACTTCGATGCCGTGCAT
GGTGGGGTTCTTCAAAGTTGATGACACCACGGGAGTGCACCGCTGCGCGG
GTACATGGGCGATGACGAAGACCGACCTCGAGGCTGCCGCGAGGATCGAG
TCTCGCGCGAGTCCGTTCGAATTCAAAACCACGGTGGGCGGGGGCGCGGA
TTTTCCTCACACGGGCAATTACCGGGGGCATTTCCTCGTGCGACAACACC
CGAAGCCGGTCACGAAGGTGGAGGAGGACGAGCTCCACCTGGCGTTCGAG
AGGAACACCGGCGGGGGCTGGAACGTGAACGGCAGCGGCCGCAACGTGTA
CGGCCCCTTCACGATCACGGGCCGCCTCGGCGCAGATCGCCGCCTGGAGG
TCTTCCGCGCGTACCCGAAACCGTCCTCGAGAGGGCACCGCCGCGCCAGC
ACCAGCTCGCACCCTGCGCCGGCGCCGGCGAGAGCGCCTACGTCGCCGGC
TGCGTGCGTCCCTAACCGCGGCAAGCACCCGCACTCGGCTCCGCCGCTCG
TTGTTGCGCAGGCTGCGTCGCCACCTGCGTTTGCGAATGGAGCGTCGGCG
ATGGCGGAGGACGCGGCCAGCTTGGTGTCTCCGGCGCCGACTAGCCGGAG
AGTAAGCCGCACGCCGTCGTACCTCATCAAGGACATCGGGAACGATGGTA
CGGCGCACTTGACGCACGGGCTGCGGCGGTGCGTGACGCTACTGAGGAGC
GTTATGGGGGTTAGGGGGAAGAGCGAGTGGTTCTTAGAGCCGGTGGACTT
TGTGAAGCTGGCTCTCGTGGACTACCCTCGAATTATCAGGCGGCCGATGG
ATCTCGGCACCATTCGGAAAAAGCTGGAGGGGGGAACGTATCAG
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