mRNA_S-dermatodea_contig12035.1264.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12035.1264.1
Unique NamemRNA_S-dermatodea_contig12035.1264.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig12035.1264.1 vs. uniprot
Match: D7FVP4_ECTSI (N-acetyltransferase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVP4_ECTSI)

HSP 1 Score: 344 bits (883), Expect = 8.710e-106
Identity = 181/329 (55.02%), Postives = 229/329 (69.60%), Query Frame = 2 
Query:  197 RLVRTLPNTA----RRLHPVNSAPEGVPSSLFNFR-RKGPRSPNEDXXXXXXXXXXXXXXXXA-----LESGVVEDSDLDGVSALLVEVFPAGVILADGEFSELESVIIGAPLEMTNKYLRAVAFYEVLYALKSRCGDRLRRGDFALTSEALVLAVRDPAASEGESGSC---------GGI---------IAAVELTLRQPNGSLPSNWPFPTPWRRR------------EPGREWEPYMCNLGVAKGYRGNGYGKQLVRLCENIAKNHWGYQRIYLHVDLDDPAATGLYSSMGYKGMEQFDAPPWMRRLLKMPTIRYQVKDFKGRRGA 1063
            R  +T PN+A    R LHP  S P+GVPSSLF F+ R  P+   ++                A     L +G++++SDL  VSALLVEVF  GV+LADGEF+ LESVI+GAP++MTN Y++AVA+ E+LY+L+SRCG+RL RGDF  +S+ALVLAVR P ++ G+S S          GG+         +A VELT+R+P+GSLP NWPFP PWRR             +P  +W+PYMCNL VA+ YRGNGYGKQLVRLCE++AKN WGY+R+YLHVDL DPAATGLYSSMGY+G+E++DAP WMR+L   PTIRYQVK FKGR+GA
Sbjct:   46 RRQQTRPNSASSGPRLLHPRGSGPDGVPSSLFTFQPRTTPKKYPQEKKRAGGDSASTSSAPVAGEENVLRAGLMDESDLPDVSALLVEVFEPGVVLADGEFTGLESVILGAPIDMTNNYMKAVAYNEILYSLRSRCGNRLTRGDFDRSSDALVLAVRGPPSTSGKSSSTPVTQDGDADGGVGXXXXAAELVAVVELTIRKPDGSLPLNWPFPAPWRREARDLIVPLLYIEKPPEQWQPYMCNLAVAEEYRGNGYGKQLVRLCEHVAKNSWGYERMYLHVDLGDPAATGLYSSMGYEGIEKYDAPLWMRKLFGWPTIRYQVKRFKGRKGA 374
[Close]
BLAST of mRNA_S-dermatodea_contig12035.1264.1 vs. uniprot
Match: A0A6H5KVK2_9PHAE (N-acetyltransferase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVK2_9PHAE)

HSP 1 Score: 239 bits (609), Expect = 1.840e-66
Identity = 149/336 (44.35%), Postives = 175/336 (52.08%), Query Frame = 2 
Query:  227 RRLHPVNSAPEGVPSSLFNFR------------------RKGPRSPNEDXXXXXXXXXXXXXXXXALESGV----VEDSDLDGVSALLVEVFPAGVILADGEFSELESVIIGAPLEMTNKYLRAVAFYEV-----------------------LYALKSRCGDRLRRGDFALTSEALVLAVRDP------------------AASEGESGSCGGIIAAVELTLRQPNGSLPSNWPFPTPWRRREPGREWEPYMCNLGVAKGYRGNGYGKQLVRLCENIAKNHWGYQRIYLHVDLDDPAATGLYSSMGYKGMEQFDAPPWMRRLLKMPTIRYQVKDF 1045
            R LHP  S PEGVPSSLF F+                    G  S +ED                A E  +    VE+SDL  VSALL EVF   +++   E     SV     LE  NKYL+ +A+ +V                       L ++KSRCG RL RGDFALTS+ALVLAVRD                    A +   G  G I+A VEL LRQP+G  P N PF        P   WEPYMCNL VA+ YRGNGYGKQLVRLCE +AK HWGY+R+YLHVD   PAAT LYSSMGY+ MEQF  P W+++LL +  I YQVK F
Sbjct:   72 RLLHPSGSGPEGVPSSLFTFQPPRATPIERPTEVAPGTTEGGHNSGSEDGAGRSAAAVITKAVASADEEALHVKLVEESDLPDVSALLAEVFEPNILIDPAELRSESSV---ERLEKANKYLKEMAYKKVGGTHPREERECPLVVWSDTSCQILRSIKSRCGKRLTRGDFALTSDALVLAVRDSRPNGSARATSAVPELGGDGAGDAGGGDAGDIVAVVELCLRQPDGWFPINGPF-------VPMTGWEPYMCNLAVAEKYRGNGYGKQLVRLCEGVAKKHWGYERMYLHVDAASPAATSLYSSMGYEIMEQFQPPSWVKKLLGLRDILYQVKHF 397
[Close]
BLAST of mRNA_S-dermatodea_contig12035.1264.1 vs. uniprot
Match: D7FVP3_ECTSI (N-acetyltransferase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVP3_ECTSI)

HSP 1 Score: 207 bits (527), Expect = 5.830e-58
Identity = 106/189 (56.08%), Postives = 125/189 (66.14%), Query Frame = 2 
Query:  533 VAFYEVLYALKSRCGDRLRRGDFALTSEALVLAVRDP------------------AASEGESGSCGGIIAAVELTLRQPNGSLPSNWPFPTPWRRREPGREWEPYMCNLGVAKGYRGNGYGKQLVRLCENIAKNHWGYQRIYLHVDLDDPAATGLYSSMGYKGMEQFDAPPWMRRLLKMPTIRYQVKDF 1045
            +A+ ++L ++KSRCG RL RGDFALTS+ALVLAVRD                    A +G  G  G I+A VEL LRQP+G LP N PF        P   WEPYMCNL V + YRGNGYGKQLVRLCE +AK HWGY+R+YLHVD   PAAT LYSSMGY+ MEQF  P W+++LL +  I YQVK F
Sbjct:    1 MAYKKILRSIKSRCGKRLTRGDFALTSDALVLAVRDSRPNGSARATSAVPELGGDGAGDGGGGDAGDIVAVVELCLRQPDGWLPINGPF-------VPMTGWEPYMCNLAVTEKYRGNGYGKQLVRLCEGVAKKHWGYERMYLHVDAASPAATSLYSSMGYEIMEQFQPPSWVKKLLGLRDILYQVKHF 182
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BLAST of mRNA_S-dermatodea_contig12035.1264.1 vs. uniprot
Match: D7FVP2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVP2_ECTSI)

HSP 1 Score: 167 bits (424), Expect = 4.470e-44
Identity = 82/106 (77.36%), Postives = 95/106 (89.62%), Query Frame = -1 
Query: 2271 EKGDDIDLSKAMANARLNLAEGKSPGAGLESAFDQADAAFADLIVTSMDDQGLTLDDEDVEDLAKGGTMDEESTSKKSRGLFGDISDVFGALSGGAHIVKREDGTL 2588
            +  DDIDLS AMANAR NLA G SPGAGLESAFDQADAAFADLIVTS+DDQG+TLDDE+V++LA+ G MD++STSKKS+GLF D+ DV GALSGGAHIVKR+DGT+
Sbjct:   75 DSSDDIDLSSAMANARANLAAGTSPGAGLESAFDQADAAFADLIVTSVDDQGVTLDDEEVQELAQSGMMDQDSTSKKSKGLFSDMKDVLGALSGGAHIVKRDDGTV 180
[Close]
BLAST of mRNA_S-dermatodea_contig12035.1264.1 vs. uniprot
Match: A0A836CNC1_9STRA (N-acetyltransferase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNC1_9STRA)

HSP 1 Score: 166 bits (420), Expect = 1.900e-42
Identity = 89/226 (39.38%), Postives = 128/226 (56.64%), Query Frame = 2 
Query:  380 GVVEDSDLDGVSALLVEVFPAGVILA-DGEFSELESVIIGAPLEMTNKYLRAVAFYEVLYALKSRCGDRLRRGDFALTSEALVLAVRDPAASEGESGSCGGIIAAVELTLRQPNGSLPSNWPFPTPWRRREPGREWEPYMCNLGVAKGYRGNGYGKQLVRLCENIAKNHWGYQRIYLHVDLDDPAATGLYSSMGYK-GMEQFDAPPWMRRLLKMPTIRYQVKDFKG 1051
            G++ED D+   + LLV  FP  V L+ +  F E E  ++  P+ + N YLR  ++YE+L  +K R G++L       +  A++L V DP+ ++        IIA VEL LR P+G+LP NWP P   + +      EPY+CNL V++ +RG G GKQLVRL E+I +N W    +YLHVD  +  A  LY SMGY+        PPW+  LL +P + Y  K  +G
Sbjct:   30 GLIEDRDVAQAAELLVNCFPFEVSLSTEAGFKEWEVQVLRIPVGLMNAYLRGFSYYEILLGIKLRMGEQLLNPQIDASGSAMILGVADPSTNQ--------IIAVVELELRIPDGTLPGNWPLPRFIKGQSAESHSEPYLCNLAVSERWRGQGIGKQLVRLSEHIVRNCWAGSCLYLHVDPSNEIALQLYQSMGYRPAAPTHTLPPWLLSLLAVPQVTYFSKSLRG 247
[Close]
BLAST of mRNA_S-dermatodea_contig12035.1264.1 vs. uniprot
Match: A0A835ZCH3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCH3_9STRA)

HSP 1 Score: 130 bits (327), Expect = 5.750e-32
Identity = 64/104 (61.54%), Postives = 84/104 (80.77%), Query Frame = -1 
Query: 2271 GDDIDLSKAMANARLNLAEGKSPGAGLESAFDQADAAFADLIVTSMDDQGLTLDDEDVEDLAKGGTMDEESTSKKSRGLFGDISDVFGALSGGAHIVKREDGTL 2582
            G DI+L+KA+ NAR NL EGKSPGAGL +A +QADAA+ADLI+TS+D + L+L DED+ +L K G MD +STS++SRG  GDI+DVF AL GGAHI +++DG +
Sbjct:    6 GGDIELAKALDNARRNLEEGKSPGAGLATAEEQADAAYADLILTSVDQKHLSLGDEDLAELTKAGMMDSKSTSRRSRGWAGDIADVFNALKGGAHIQRQKDGRI 109
[Close]
BLAST of mRNA_S-dermatodea_contig12035.1264.1 vs. uniprot
Match: C1DZJ8_MICCC (Uncharacterized protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1DZJ8_MICCC)

HSP 1 Score: 112 bits (281), Expect = 2.630e-25
Identity = 59/103 (57.28%), Postives = 74/103 (71.84%), Query Frame = -1 
Query: 2271 DDIDLSKAMANARLNLAEGKSPGAGLESAFDQADAAFADLIVTSMDDQGLTLDDEDVEDLAKGGTMDEESTSKKSRGLFGDISDVFGALSGGAHIVKREDGTL 2579
            D  D+SKAM NAR     G SPGAGL  A  QA+AAFAD+I T++D  G  LD E++  L++GG MDEES SKKS G+ GD+ D+FGALS GAHIVK++ G +
Sbjct:   42 DAEDISKAMENARACEKSGLSPGAGLADADAQAEAAFADMINTTVDVTGEALDSEELSQLSRGGKMDEESKSKKSGGILGDVRDLFGALSKGAHIVKQKGGRV 144
[Close]
BLAST of mRNA_S-dermatodea_contig12035.1264.1 vs. uniprot
Match: A0A7S0AJY5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AJY5_9STRA)

HSP 1 Score: 114 bits (285), Expect = 3.300e-24
Identity = 78/224 (34.82%), Postives = 111/224 (49.55%), Query Frame = 2 
Query:  380 GVVEDSDLDGVSALLVEVFPAGVILADGEFSELESVIIGAPLEMTNKYLRAVAFYEVLYALKSRCGDRLRRGDFA-------------------LTSEALVLAVRDPAASEGESGSCGGIIAAVELTLRQPNGSLPSNWPFPTPWRRRE--------PGRE--WEPYMCNLGVAKGYRGNGYGKQLVRLCENIAKNHWGYQRIYLHVDLDDPAATGLYSSMGYK 964
            G+ E+ DL  +S L ++ F    I   G+ S  E  I+   + + N Y    A+ EVL  L+SR  D+L + D A                     + +L+LA+  P   EGE G+   I A VEL L+  +  +P + P+     RR         P R+   +PY+ NL VA+  RG   GK LVR  E IA + WGY++IYLHVDL++ AA  LY S GY+
Sbjct:   68 GIAEEDDLPDISRLTIDAFGDVAITLGGDLSSFERAILSPGVALWNGYTGYAAYTEVLSGLRSRMKDKLEKVDLASPLVAKDGVDMPEEDSEQLAANSSLILALGRPK-PEGEPGTIDAI-ATVELRLQPTDAKIPFSQPWVDSVERRAAKALGVDGPARDDTLQPYLSNLCVAESARGRRIGKALVRCLERIACDTWGYEKIYLHVDLENAAAYNLYKSEGYQ 289
[Close]
BLAST of mRNA_S-dermatodea_contig12035.1264.1 vs. uniprot
Match: A0A448ZI05_9STRA (N-acetyltransferase domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZI05_9STRA)

HSP 1 Score: 106 bits (264), Expect = 5.040e-21
Identity = 75/243 (30.86%), Postives = 105/243 (43.21%), Query Frame = 2 
Query:  374 ESGVVEDSDLDGVSALLVEVFPAGVILADGEFSELESVIIGAPLEMTNKYLRAVAFYEVLYALKSRCGDRLRRGDFALTSEA-------------------LVLAVRDPAASEGESGSCGGIIAAVELTLRQPNGSLPSNWPFPTPWRRREPGR-----------------EWEPYMCNLGVAKGYRGNGYGKQLVRLCENIAKNHWGYQRIYLHVDLDDPAATGLYSSMGYKGMEQFDAPPW 994
            E G+VE+ +L  +   ++  F A  I    + +  E +++    E  N Y   VAF EV    K R  DR +     +   A                   LVL +  P+     S     +IA++EL L+  +  +P    F  PW  R   R                 + +PY+ NL V + +RG   G+ LVR  ENIAKN WGY R+YLHVD D+PAA  LY S GY  +     P W
Sbjct:   87 ELGLVEEEELPDLCKFIITAFGAEAIQLASDMNSFERMLLNPAAEFLNGYSGLVAFAEVFSGTKQRLADRFQENPSLVDISAPDLKGLSREEQIRKAERDSLVLILGKPSNDASRSIE---VIASIELRLQPCDAKIP----FSIPWLDRVERRIGSLIGLGNNGNGAGTNDMQPYLSNLCVDEKFRGQKIGRGLVRCVENIAKNSWGYNRMYLHVDEDNPAALNLYKSEGYSDVGHRWNPFW 322
[Close]
BLAST of mRNA_S-dermatodea_contig12035.1264.1 vs. uniprot
Match: A0A7S4AXY7_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AXY7_9STRA)

HSP 1 Score: 105 bits (263), Expect = 1.070e-20
Identity = 77/244 (31.56%), Postives = 108/244 (44.26%), Query Frame = 2 
Query:  374 ESGVVEDSDLDGVSALLVEVFPAGVILADGEFSELESVIIGAPLEMTNKYLRAVAFYEVLYALKSRCGDRLRRG----DFALTS---------------EALVLAVRDPAASEGESGSCG-GIIAAVELTLRQPNGSLPSNWPFPTPWRRREPGR-----------------EWEPYMCNLGVAKGYRGNGYGKQLVRLCENIAKNHWGYQRIYLHVDLDDPAATGLYSSMGYKGMEQFDAPPW 994
            E G+VE+ +L  +   +V  F A  I    + +  E +++    E  N Y   VAF EV    K R  DR R      D +  +               E+LVL +       G+  S    +IA++EL L+  +  +P    F  PW  R   R                 + +PY+ NL V + +RG   G+ LVR  EN+AKN WGY RIYLHVD D+ AA  LY S GY+ +     P W
Sbjct:  112 ELGLVEEEELPDLCKFVVTAFGAEAIQLSSDINSFERMLLNPAAEFLNGYSGLVAFAEVFSGTKQRLADRFREHPSLVDISAPALKGLSREERIRKVERESLVLVLARATNDTGDKNSKSIEVIASIELRLQPCDAKIP----FSIPWLDRVERRIGSLVGLGNIDDVAGSNDLQPYLSNLCVDEKFRGQKIGRGLVRCIENVAKNSWGYNRIYLHVDEDNIAALNLYKSEGYRDVGHRWNPFW 351
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12035.1264.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVP4_ECTSI8.710e-10655.02N-acetyltransferase domain-containing protein n=2 ... [more]
A0A6H5KVK2_9PHAE1.840e-6644.35N-acetyltransferase domain-containing protein n=1 ... [more]
D7FVP3_ECTSI5.830e-5856.08N-acetyltransferase domain-containing protein n=1 ... [more]
D7FVP2_ECTSI4.470e-4477.36Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CNC1_9STRA1.900e-4239.38N-acetyltransferase domain-containing protein n=1 ... [more]
A0A835ZCH3_9STRA5.750e-3261.54Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
C1DZJ8_MICCC2.630e-2557.28Uncharacterized protein n=1 Tax=Micromonas commoda... [more]
A0A7S0AJY5_9STRA3.300e-2434.82Hypothetical protein (Fragment) n=1 Tax=Minutocell... [more]
A0A448ZI05_9STRA5.040e-2130.86N-acetyltransferase domain-containing protein n=1 ... [more]
A0A7S4AXY7_9STRA1.070e-2031.56Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12035contigS-dermatodea_contig12035:1260..6960 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score344.4
Seed ortholog evalue6.1e-92
Seed eggNOG ortholog2880.D7FVP4
EggNOG free text desc.Acetyltransferase (GNAT) family
EggNOG OGs2CZCN@1,2S9Q8@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons6
Model size3047
Cds size996
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12035.1264.1prot_S-dermatodea_contig12035.1264.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12035 4390..6887 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924228.0929646-UTR-S-dermatodea_contig12035:1259..18901622924228.0929646-UTR-S-dermatodea_contig12035:1259..1890Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12035 1260..1890 -
1694079109.029146-UTR-S-dermatodea_contig12035:1259..18901694079109.029146-UTR-S-dermatodea_contig12035:1259..1890Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12035 1260..1890 -
1622924228.1023035-UTR-S-dermatodea_contig12035:3042..43891622924228.1023035-UTR-S-dermatodea_contig12035:3042..4389Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12035 3043..4389 -
1694079109.042523-UTR-S-dermatodea_contig12035:3042..43891694079109.042523-UTR-S-dermatodea_contig12035:3042..4389Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12035 3043..4389 -
1622924228.1548507-UTR-S-dermatodea_contig12035:6887..69601622924228.1548507-UTR-S-dermatodea_contig12035:6887..6960Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12035 6888..6960 -
1694079109.1022327-UTR-S-dermatodea_contig12035:6887..69601694079109.1022327-UTR-S-dermatodea_contig12035:6887..6960Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12035 6888..6960 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924228.1105165-CDS-S-dermatodea_contig12035:4389..45701622924228.1105165-CDS-S-dermatodea_contig12035:4389..4570Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12035 4390..4570 -
1694079109.0553937-CDS-S-dermatodea_contig12035:4389..45701694079109.0553937-CDS-S-dermatodea_contig12035:4389..4570Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12035 4390..4570 -
1622924228.1187246-CDS-S-dermatodea_contig12035:4782..49041622924228.1187246-CDS-S-dermatodea_contig12035:4782..4904Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12035 4783..4904 -
1694079109.0639846-CDS-S-dermatodea_contig12035:4782..49041694079109.0639846-CDS-S-dermatodea_contig12035:4782..4904Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12035 4783..4904 -
1622924228.1274617-CDS-S-dermatodea_contig12035:5598..58171622924228.1274617-CDS-S-dermatodea_contig12035:5598..5817Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12035 5599..5817 -
1694079109.071999-CDS-S-dermatodea_contig12035:5598..58171694079109.071999-CDS-S-dermatodea_contig12035:5598..5817Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12035 5599..5817 -
1622924228.1366363-CDS-S-dermatodea_contig12035:6094..62111622924228.1366363-CDS-S-dermatodea_contig12035:6094..6211Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12035 6095..6211 -
1694079109.0813577-CDS-S-dermatodea_contig12035:6094..62111694079109.0813577-CDS-S-dermatodea_contig12035:6094..6211Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12035 6095..6211 -
1622924228.1468892-CDS-S-dermatodea_contig12035:6530..68871622924228.1468892-CDS-S-dermatodea_contig12035:6530..6887Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12035 6531..6887 -
1694079109.0925722-CDS-S-dermatodea_contig12035:6530..68871694079109.0925722-CDS-S-dermatodea_contig12035:6530..6887Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12035 6531..6887 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12035.1264.1

>prot_S-dermatodea_contig12035.1264.1 ID=prot_S-dermatodea_contig12035.1264.1|Name=mRNA_S-dermatodea_contig12035.1264.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=332bp
MLTHLGIHSTCPHATPYALLPSTWTPSSWTSPSLPQQQRRRRLVRTLPNT
ARRLHPVNSAPEGVPSSLFNFRRKGPRSPNEDDDGGGGAGESVTAAAAAL
ESGVVEDSDLDGVSALLVEVFPAGVILADGEFSELESVIIGAPLEMTNKY
LRAVAFYEVLYALKSRCGDRLRRGDFALTSEALVLAVRDPAASEGESGSC
GGIIAAVELTLRQPNGSLPSNWPFPTPWRRREPGREWEPYMCNLGVAKGY
RGNGYGKQLVRLCENIAKNHWGYQRIYLHVDLDDPAATGLYSSMGYKGME
QFDAPPWMRRLLKMPTIRYQVKDFKGRRGAD*
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mRNA from alignment at S-dermatodea_contig12035:1260..6960-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12035.1264.1 ID=mRNA_S-dermatodea_contig12035.1264.1|Name=mRNA_S-dermatodea_contig12035.1264.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5701bp|location=Sequence derived from alignment at S-dermatodea_contig12035:1260..6960- (Saccorhiza dermatodea SderLu1190fm monoicous)
GACACGGCACGAAGGAACAAGGTGTAGGGCTGCTGATAGGACCACTTGAT
CGCTAACCCCGGAAGCGAGAAGCATGTTGACGCACCTGGGAATACACTCG
ACCTGTCCGCATGCCACACCGTACGCTTTGCTTCCCAGCACGTGGACCCC
ATCGAGCTGGACGTCGCCAAGCTTGCCCCAACAGCAACGCCGCAGGCGCC
TAGTACGAACATTGCCCAACACAGCGCGTCGACTCCACCCTGTCAACAGT
GCTCCGGAGGGGGTGCCCAGCAGCCTCTTTAACTTCCGACGAAAGGGCCC
TCGGTCGCCCAACGAAGATGACGATGGTGGTGGAGGTGCTGGCGAGTCGG
TGACTGCTGCCGCAGCAGCTCTGGAGTCCGGGGTGGTGGAAGACTCTGAC
CTCGACGGTGTCTCGGCTCTGCTCGTTGAGGTGAGTGCTGCGTGTGCTTC
GCTCGGCTTGGTGGTCACTTCTCCCGCTATTGAACTCGCAACTACTCCGG
AGTATGATATTGGCGTTGCGGCTGTGACGTAACCCGCACGACGATGCACT
TCGGAGCTTTGGCCTTGGTCGCATTAAAGGCACCTCCCGTGCTGTACCGG
CCGATCTTTTGTATAGAACGCGAGGCCTCCTGCGTCATGGCGTAGCTGGT
ATGATACGTGTAGCTACTGTAGTTGGTTCGTGTATCGGGGATCACCCCAC
GGTGCAGTTCCATTGGTCGAACATGCTTCACCCACGTCAATACTATTAGG
TGTTCCCTGCTGGCGTCATACTGGCAGACGGAGAGTTCAGCGAGCTGGAG
AGTGTCATCATCGGAGCCCCCCTCGAGATGACCAACAAGTACTTGCGGGC
CGTGGCTTTCTACGAGGTGAGCGGGCAGCGGAGAGTTATCCGCATCAGGG
AGGCTGTGAGCTCGCGATTTACCACGCGCACACGGGCGTCGACGGGCAGC
ATGGTCGGAGGCAGCTATTAATAGCTGCCAAGTTCGACCCGTTGGTTGTT
CCGGAGAACCTCGCGTTCATGCTCTGAACGTAAGCCGTTGGACGCTCTGG
TAGAGAAATGCTATAGGGTGCCGTTAAGGACCAGCTCGGCACAGCATCAA
TCGGGACAAAAATGCCCTTCGTGTATGCCGCTCCCTGCGACAGGTATTGT
ACGCTCTAAAGTCTCGATGCGGGGATCGCTTGCGAAGAGGGGACTTCGCC
CTCACGAGCGAAGCGCTGGTGTTGGCAGTTCGAGACCCTGCCGCGTCCGA
GGGCGAGAGCGGTAGCTGTGGGGGCATCATCGCGGCGGTAGAGCTGACGT
TGCGGCAGCCGAACGGCTCGCTCCCCTCCAACTGGCCCTTTCCGACCCCG
TGGCGACGAAGGGTGAGAGGACGGCGTGTTTCAGTTGCGTGCGGCGTCGA
GGTGCGCCCCTGTCGGCGTCGGTGATGGAAACGAGTATGCGCGCCTCTGT
AAGCATTACCCCTCCTCATTATATTAGGAGATCAGAGTTGGGGTAGGACC
GTTTGAGCGCTCAAGACTCGCGGTCGTACGTTCATGCCCCTCGTTGGATT
TTGCACATGCTAGTCTACCGGTGTTGTTGTAGAGTATCTTTGGTGTGCTA
GCGGGAGGGAGGGCCCCGTAGGGGCCAACGGCAGACGTAGGGGTCAAGAA
TAGAAAATATAAGCAAGCAATCATCATGTGCCCCACTTTACAGACCAGAT
ATATAGAGGCGAATCGCGAATTGTAATTGTGTCAGATTTAGTACCGACAG
AGTCGTGAGTGAAGCAAAGTGTATTTGGAAAGAAATCTACTATTTGACAA
ATGAAAATGACATATTTTTCGTCTTGGATTTAGTGTGGGGGGCGGCTTCA
AAAGTTAGCAACTTGCGCTCTCTTTACTTACATAATGTACTATTTTAGTT
GTATTATATGAATGCACACTGCGCGGGTGTGCTGGGAGGGAAAACATACC
GGTAGCCCATGCTCGCTTCTCAGATGGCGATACCAATATCTCTGGAGTTA
CAAATGTATGATTGCTGTGCGGCGGCTCAACCGGCGTGTGCGCGCGCCGT
CCGCAGGAGCCAGGACGGGAATGGGAGCCCTACATGTGCAATCTTGGCGT
GGCAAAGGGTTACAGGGGGAACGGTTATGGGAAGCAGCTGGTTCGGCTCT
GCGAGAACATCGCGAAGAACCACTGGGGGTGAGAAACCCCGCGGCGCAAT
CACTCGAGACCCCGCTGCTGCCCATATACCATAGCATCGTGTGATGTCAA
CGATTGATACGTAAATCCGGGCCGTCGAACAGGAAATTATTGCCTCTGCA
TCATATTGGCTCCTGAGCTTCCTGCCCGTCACGCCACGTTGTATTCTCTC
TCTCGCCCGCCCTATCCTGCCCGGTTTCTTTGCTCAACAGGTACCAGCGC
ATATACCTTCACGTTGACTTGGACGATCCCGCGGCGACCGGGCTGTACTC
TTCGATGGGGTACAAGGGTATGGAGCAGTTTGACGCTCCCCCTTGGATGA
GGCGGCTTTTGAAAATGCCGACCATTCGGTACCAGGTCAAAGACTTCAAA
GGCCGACGGGGTGCAGATTAGAGTGAATATAAGAACAAAGCGAAGGACTC
AACTGCTGTACCGGTGGAACACACTGCAATACTCTGGCGCCGAGGCTCGG
TGGTGTGGCACTACTGGGCAGGTTTGTTGGGTAGGTCTACCAGTGTTGGT
ATTGATAGTGGTATGTTAGGGAGGTCGGAGGGGCTGGTCCGGTTGAGCTG
CCAGTCGCGCGAGCAGCAGCACGAACACGGCAACGTAGCAAAATGGTGCC
AGCAAGCAGGATGGCGCTTCGGCTGATATGGAGGCTTGTGCACCTAGATG
ATGTGGAGCTGTAACACCAGACACAGGATCGATGATCGCAGAACAGGCAG
TAGGACGTGTACCCAACCTTGTTTGTGAATGCGGTACTGTAATAGTTTTT
TAGGTCAGACCGAGCAGCGCCGTGCGATGGGCGATTTACGGCTCCACAAA
GCGCCGTACGTCAATTGGTGAGTTGGCCGCCTTGATATTTGTTGACCACA
CTTGATGAGCACCCCCTCTATTTGCTTTGGTGCGCTCGCTTGAGCTCTGT
GACTATGGTTTTAACTCATAGAAAAGGTAAACATGCCTAGGCTAGAGGTT
GATTTTTTGAACGGGGGAATTCGAAATTACCCAACTGGGTTTGTGTATCA
GAAACGTTCTACGTTACATCGTACTCTGTTGTAGATGGACTATCCCGGTA
CCCGTCCATGATTTTATCGTCTGTCGTTGACAGCGAGGCTGTCGGGAAAG
TCAGGCATTCTTAACTCTACCGCGAGGCCGCGCGCCTCAAATCTAAACTC
AACACCCGTGAAAAGCTGTGCCCTGATGACAGGGCGGCTACGACGGCGTT
CGGTATTTGTCCCGGCTGCGATGTTTCCGCCAGCGCTACCTGGCTAGTTC
CCATGCTAACCGGGCAGTATCAGAGCGATCTCAAGTAGGACTGCTCTGCC
CGCTCGACTTGGTCGCTATCACGATGACACTATTACATTTTTACAAGAAA
GGCATCGTTTCGAACTTCCAGAACACATTCCAATGAGAGTCCTCAGCACC
TCTGCCTCGAGGTTTCTCGTGTACTTACGATCTAGCCCCGTTGAATCAAT
ACTTTACACCGGACAGCGAAGTACACTGCCTACATCGCCCTGAATCTCGT
TGCCCCGGCAAATCTCTCGGTACCACCGAAGCCTGGCGAAGCAGCTGTGC
AACACTAATATGTATATCGTCACAAGGTACCGTCCTCGCGCTTAACGATG
TGAGCTCCCCCGCTCAAGGCGCCGAAGACGTCCGAGATGTCCCCAAACAG
CCCCCTGCTTTTCTTGGACGTGCTCTCTTCGTCCATCGTGCCCCCTTTCG
CAAGGTCCTCAACGTCCTGGACGGGAAATATCGAGCACGTTGTCAGGTTC
TCGTGTACCTCACGAAGTCACAACCTTTCGAGGGAGCGACCTGCGACCTT
CCTCATTAGTGTACTACAATATGTATACGACTTGCAACTGCAGCAGGACC
GTCCGCGTTCAAACTCTGCCTTCAGTTTACTCACAACAAGGTGATCTTGC
GATCACGCCGCACGAGGGTGGCCTTTTCATTGTATGTCCCCCCCATGCGT
GCGGCGCTTCTGCGTTTGCGCGGAGACCAAAGTCCTTTTGCGGTACTTGG
AGAATAGTAAATAGTACCGAATGTGCAACATTGATTGCCCAGTATGCCCA
ATCAACCCATGGCATATCGGTTGGCGTCGCAAACGCAAGGGTCATTACTA
TAATGTAGCTGGGTATCATCCTTGTGAAACGCAGCCTGGCCGACGAAAAA
CCGTATCGCTCCGTCCCGGCATTGTTGGGACGCGTGGTCTCATGTCAATT
CGGATAAGACGTGCGTTAAACATAAGTACCCGACCCACAGACTCCTCATT
CTGCTCCATTCGCCCAGTGGTTCAGCCGGTGGCACACTACGTCTCGGGAA
ACGTGGAAGGTCGCGGATAAAGCCAGCGTGTGTGCAAGCATGATGTCAAA
TACCTGTACAAGAAAATAATATTTTGTTCTCTTCTCTGCAGCCGAAATCG
CGAGAGCGTGAAGATGAAAATCCGAGGAGCAAGAGATGGCATGATCCTCC
GTCGCCACAGACGGGATCCAAGTAAGGCCGGACAGACGGGCGTACTCAGC
GCAACTCACACACCCGGAGGACTACTACTACTACAGTTGTTGCACAAGTA
GGGGGGGGTGTACCACACACGAACTCACTTATACTCGAAGTATAATATTA
AACACGTAAGAGCTCTACACGTACATGTTACAAAGAAGTAGAGCTTTAGA
GCTATGCTCTTTACTCGTACTTGATTTTGATTGATTTGATTGATTTGATT
GATTTTATTGATTTGATGGATTAGCACAGGTGCTCTACTCGTACGCTTGC
ACCCGATCGGCTTATAATAGTCCGACCAAAACTTGTCAGATGCGCAGAGA
TTTTGCTGTATCCTATACAAGTATAAGTACAAAAGTACTGGTACGATAGT
TAGGTGTCTGTCGCCTACCTCATCATCGAGAGTGAGTCCCTGGTCGTCCA
TTGAGGTGACAATCAGGTCTGCAAACGCCGCGTCCGCCTGGTCGAATGCA
GACTCCAGGCCAGCACCGGGAGATTTTCCCTCAGCCAGGTTCAACCGTGC
GTTCGCCATCGCTTTGCTGAGGTCGATATCATCGCCTTTCTCACCGGCTC
CTCCTGCTGATGATGCTAATAATGACAAACAAGAGACCGATGATGATCCA
GAGTTGCCAGCAGACAGCATGCGCCGTCTACGACATGCCACCAGCGGTCG
ATGAGCGAGACGCGACGAACTCGCAAATACAACGCTCTGCCCGTTTCCCA
CCGCTGCTCTGGTACATGCAGCTGGTGGTGCGACGACGAAGCCGGAGCCG
ATGAGTGCTCGTCCCAGCAGGCACCAGGCTCCGATGATCATGCTCCTTTG
CATGCGGGCAGAGCAGCAGCAGTGACGGATCATGTTTGCGTTCTGGCAAG
GCAAGAGGGGCCTCGACCGGAGCGCTCCGTCCACCGGCAAGACACGTATG
CTACGTTTTTACACAAACACTCCTAGGGTGGAGTATTTCTCCCGGGCTGT
GTGTTGTAGCTGGTAGGTGGTGGGTGGCGGGTGGGTCGGTCGTGTTGCCT
G
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Coding sequence (CDS) from alignment at S-dermatodea_contig12035:1260..6960-

>mRNA_S-dermatodea_contig12035.1264.1 ID=mRNA_S-dermatodea_contig12035.1264.1|Name=mRNA_S-dermatodea_contig12035.1264.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1992bp|location=Sequence derived from alignment at S-dermatodea_contig12035:1260..6960- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTTGACGCACCTGGGAATACACTCGACCTGTCCGCATGCCACACCGTA
CGCTTTGCTTCCCAGCACGTGGACCCCATCGAGCTGGACGTCGCCAAGCT
TGCCCCAACAGCAACGCCGCAGGCGCCTAGTACGAACATTGCCCAACACA
GCGCGTCGACTCCACCCTGTCAACAGTGCTCCGGAGGGGGTGCCCAGCAG
CCTCTTTAACTTCCGACGAAAGGGCCCTCGGTCGCCCAACGAAGATGACG
ATGGTGGTGGAGGTGCTGGCGAGTCGGTGACTGCTGCCGCAGCAGCTCTG
GAGTCCGGGGTGGTGGAAGACTCTGACCTCGACGGTGTCTCGGCTCTGCT
CGTTGAGATGTTGACGCACCTGGGAATACACTCGACCTGTCCGCATGCCA
CACCGTACGCTTTGCTTCCCAGCACGTGGACCCCATCGAGCTGGACGTCG
CCAAGCTTGCCCCAACAGCAACGCCGCAGGCGCCTAGTACGAACATTGCC
CAACACAGCGCGTCGACTCCACCCTGTCAACAGTGCTCCGGAGGGGGTGC
CCAGCAGCCTCTTTAACTTCCGACGAAAGGGCCCTCGGTCGCCCAACGAA
GATGACGATGGTGGTGGAGGTGCTGGCGAGTCGGTGACTGCTGCCGCAGC
AGCTCTGGAGTCCGGGGTGGTGGAAGACTCTGACCTCGACGGTGTCTCGG
CTCTGCTCGTTGAGGTGTTCCCTGCTGGCGTCATACTGGCAGACGGAGAG
TTCAGCGAGCTGGAGAGTGTCATCATCGGAGCCCCCCTCGAGATGACCAA
CAAGTACTTGCGGGCCGTGGCTTTCTACGAGGTGTTCCCTGCTGGCGTCA
TACTGGCAGACGGAGAGTTCAGCGAGCTGGAGAGTGTCATCATCGGAGCC
CCCCTCGAGATGACCAACAAGTACTTGCGGGCCGTGGCTTTCTACGAGGT
ATTGTACGCTCTAAAGTCTCGATGCGGGGATCGCTTGCGAAGAGGGGACT
TCGCCCTCACGAGCGAAGCGCTGGTGTTGGCAGTTCGAGACCCTGCCGCG
TCCGAGGGCGAGAGCGGTAGCTGTGGGGGCATCATCGCGGCGGTAGAGCT
GACGTTGCGGCAGCCGAACGGCTCGCTCCCCTCCAACTGGCCCTTTCCGA
CCCCGTGGCGACGAAGGGTATTGTACGCTCTAAAGTCTCGATGCGGGGAT
CGCTTGCGAAGAGGGGACTTCGCCCTCACGAGCGAAGCGCTGGTGTTGGC
AGTTCGAGACCCTGCCGCGTCCGAGGGCGAGAGCGGTAGCTGTGGGGGCA
TCATCGCGGCGGTAGAGCTGACGTTGCGGCAGCCGAACGGCTCGCTCCCC
TCCAACTGGCCCTTTCCGACCCCGTGGCGACGAAGGGAGCCAGGACGGGA
ATGGGAGCCCTACATGTGCAATCTTGGCGTGGCAAAGGGTTACAGGGGGA
ACGGTTATGGGAAGCAGCTGGTTCGGCTCTGCGAGAACATCGCGAAGAAC
CACTGGGGGAGCCAGGACGGGAATGGGAGCCCTACATGTGCAATCTTGGC
GTGGCAAAGGGTTACAGGGGGAACGGTTATGGGAAGCAGCTGGTTCGGCT
CTGCGAGAACATCGCGAAGAACCACTGGGGGTACCAGCGCATATACCTTC
ACGTTGACTTGGACGATCCCGCGGCGACCGGGCTGTACTCTTCGATGGGG
TACAAGGGTATGGAGCAGTTTGACGCTCCCCCTTGGATGAGGCGGCTTTT
GAAAATGCCGACCATTCGGTACCAGGTCAAAGACTTCAAAGGCCGACGGG
GTGCAGATTAGGTACCAGCGCATATACCTTCACGTTGACTTGGACGATCC
CGCGGCGACCGGGCTGTACTCTTCGATGGGGTACAAGGGTATGGAGCAGT
TTGACGCTCCCCCTTGGATGAGGCGGCTTTTGAAAATGCCGACCATTCGG
TACCAGGTCAAAGACTTCAAAGGCCGACGGGGTGCAGATTAG
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