mRNA_S-dermatodea_contig12028.1259.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12028.1259.1
Unique NamemRNA_S-dermatodea_contig12028.1259.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig12028.1259.1 vs. uniprot
Match: D7FQ59_ECTSI (DNA-(apurinic or apyrimidinic site) endonuclease n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQ59_ECTSI)

HSP 1 Score: 108 bits (270), Expect = 1.270e-25
Identity = 59/90 (65.56%), Postives = 70/90 (77.78%), Query Frame = 1 
Query:    1 QETKLQEKDVGPMQEQDILPGYSSAWSCSTVKKGYAGTAVFFTKQAEPWTGGG----ETGDGSAS-EPAKKKQKQGKISKFFAPKDSKKT 255
            QETK+QEKDV  ++ QDILPGY+S WSCS  K GY+GTAVFFTKQ++PW G G     TG+G  S EPA+KK KQGKIS FF+PK SKK+
Sbjct:  112 QETKIQEKDVEALRAQDILPGYASEWSCSRTKLGYSGTAVFFTKQSDPWKGDGGGIDATGNGLPSDEPARKKLKQGKISTFFSPKPSKKS 201
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BLAST of mRNA_S-dermatodea_contig12028.1259.1 vs. uniprot
Match: A0A2R5GJJ6_9STRA (DNA-apurinic or apyrimidinic site lyase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GJJ6_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 5.170e-8
Identity = 28/41 (68.29%), Postives = 34/41 (82.93%), Query Frame = 1 
Query:    1 QETKLQEKDVGPMQEQDILPGYSSAWSCSTVKKGYAGTAVF 123
            QETK+QE  VG  ++  +LPGY+S WSCSTVKKGYAGTA+F
Sbjct:  188 QETKIQESHVGDFEK--LLPGYTSFWSCSTVKKGYAGTALF 226
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12028.1259.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FQ59_ECTSI1.270e-2565.56DNA-(apurinic or apyrimidinic site) endonuclease n... [more]
A0A2R5GJJ6_9STRA5.170e-868.29DNA-apurinic or apyrimidinic site lyase n=1 Tax=Ho... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12028contigS-dermatodea_contig12028:3262..6009 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score111.3
Seed ortholog evalue2.8e-22
Seed eggNOG ortholog2880.D7FQ59
Preferred nameARP
KEGG rclassRC00064,RC00090,RC00162
KEGG koko:K01142,ko:K01930,ko:K10771
KEGG ReactionR00942,R02237,R04241
KEGG Pathwayko00790,ko01100,ko01523,ko03410,map00790,map01100,map01523,map03410
KEGG ModuleM00296
GOsGO:0003674,GO:0003824,GO:0003906,GO:0004518,GO:0004527,GO:0004528,GO:0004529,GO:0004536,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006289,GO:0006355,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0008081,GO:0008150,GO:0008152,GO:0008296,GO:0008309,GO:0008311,GO:0008408,GO:0009295,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0016796,GO:0016895,GO:0019219,GO:0019222,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0033554,GO:0033683,GO:0034641,GO:0042578,GO:0042644,GO:0042646,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045893,GO:0045935,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051716,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:0090304,GO:0090305,GO:0140097,GO:1901360,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141
EggNOG free text desc.double-stranded DNA 3'-5' exodeoxyribonuclease activity
EggNOG OGsCOG0708@1,KOG1294@2759
EC3.1.11.2,4.2.99.18,6.3.2.17
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03400
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEndonuclease/exonuclease/phosphatase
Ec32 orthologEc-01_007370.1
Exons2
Model size320
Cds size318
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924227.7183015-CDS-S-dermatodea_contig12028:3261..34501622924227.7183015-CDS-S-dermatodea_contig12028:3261..3450Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12028 3262..3450 +
1694079108.8047378-CDS-S-dermatodea_contig12028:3261..34501694079108.8047378-CDS-S-dermatodea_contig12028:3261..3450Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12028 3262..3450 +
1622924227.7322123-CDS-S-dermatodea_contig12028:5878..60071622924227.7322123-CDS-S-dermatodea_contig12028:5878..6007Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12028 5879..6007 +
1694079108.8156726-CDS-S-dermatodea_contig12028:5878..60071694079108.8156726-CDS-S-dermatodea_contig12028:5878..6007Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12028 5879..6007 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12028.1259.1prot_S-dermatodea_contig12028.1259.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12028 3262..6007 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12028.1259.1

>prot_S-dermatodea_contig12028.1259.1 ID=prot_S-dermatodea_contig12028.1259.1|Name=mRNA_S-dermatodea_contig12028.1259.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=106bp
QETKLQEKDVGPMQEQDILPGYSSAWSCSTVKKGYAGTAVFFTKQAEPWT
GGGETGDGSASEPAKKKQKQGKISKFFAPKDSKKTKEAEPSGTASTAEDS
EDAAGA
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mRNA from alignment at S-dermatodea_contig12028:3262..6009+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12028.1259.1 ID=mRNA_S-dermatodea_contig12028.1259.1|Name=mRNA_S-dermatodea_contig12028.1259.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2748bp|location=Sequence derived from alignment at S-dermatodea_contig12028:3262..6009+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGAGACGAAGCTACAGGAAAAGGATGTCGGCCCGATGCAAGAGCAAGA
CATTCTCCCGGGCTACTCTTCCGCTTGGTCGTGCTCCACGGTCAAGAAAG
GCTACGCCGGTACCGCGGTTTTCTTCACCAAGCAGGCCGAGCCGTGGACG
GGGGGCGGGGAAACAGGCGACGGGTCTGCATCCGAACCGGTATGCCTTTT
TTTTTTTTTTTTTTAATCTCTCCCCATTTTTCGGATGCAAGGTGCACTCG
ACGTTTTTTTATTATTATTAGCTGCGATCCGACAAAACGCAGGAGGGTAC
TTGTACAAGGAATGCGTACGGCGTACCGGTGCAAAGTCAAGGAAGCTAGG
TTTACCACCACTCGCGCTACGCCTAGAGGTATAGAGATACCGCGACGAAG
TATAATACATACATAGAAGTACAAGGGCATACGTACAAAAATATGTAGAA
CTCGACGGGTGTATTATTTGCGGGATGGGTTCGCCGGCGTTCACTCTCTG
GGCCGCGCACGGCCCGCAGTAAAGTGCTGCTACTGTACTGCGATATTCGT
CTCGTTAGAGGGCGAGACGTGCGTTTTTGTAGCTGTTTCAATGGCGTTTT
TTTGTCCTTTTTTGGACGCCAAAAACACGTTTTTGGCCATTAACTTGATG
AAAACGGGAAATTGTAAAAAACAGCCTGAACAAAATTTGACGGAGAAAAT
TTTCCCCATCTAGTGCCCAAATATTAGCGCTCCTAACTCTGCGTTTTCAT
CCCGGCGCTTGCGAAAAACAGCTCTGTTCTAATGTTGCACCCCCTGTACA
CTGTACACTGTACACCTGTATTACTATACTATTACGGAGGTACACTATAA
TCAAGTAATCAGGACCAAATCTCATGACCATGAATACAATACCCAACTAT
TCCGAACATGAATATCATTAATACCCAAAACAACAAAAATCTCACGAAAA
ATAAAAAAATACACGAGATATGGCCATACACAAGAATTTATCGACCTTGG
AATCTCGATAATTGATCATTCCAGCCTATTTGATTATTTCTAGGTTGAGA
CTTGTGGAAAATTTGGCAAATTTGGACCTGTAAACTATGGTATAGTCCCC
CGTGATACTGTAATTATTATGCTGCTGTAAGTGTGTACTGTCTGTGTTTT
TTATAACATGGCCAGCTTTCGGCCGACGGCATGTTTCCTCATCATCTCCA
GAAACCAATCAATCAGCCACCACCGTCCCGCCGCCTGCGAGTGTGTGTGT
GTGTGTACAATTTATTTATTTTGCAACACGCGTGCTGTGAGTGCCGGATC
ACTAGACTATTGACACGCCAACTCACCATCGAGACTATGACATCATAGAC
TGTTGCCGTAGAGATAATGAGTCGTCTCGGGTTGATGCCCGACGCCCGAT
CTCAGGGGGTCACGTGTCGCCCCCTGTCTCTCAAAGCACACACCCCTCAA
CCCGGGCTGAACATCGTGTTCGGTCCTCACCCACGAGGTGCGTCGCTCGC
CCCGCGTGCCATCTCGAAACCCGCTCTAGCGAGTCCGAACACGAGGCAAC
CCCCTGACGTTTGGCGTCCACGGTAGCGGCGCACTCGCTTACTTCTCTCC
ACAACATGCCGTCGCGCAGAAAGCCCAAACGGTATTCTCCTGCGTCTCTC
CCACATGCAGTTTTTTTTTACAAACAAAACTATTAACGGAGGTACTGTAC
ACAGCAGCACTGATATTTATTATTAGTATAATACAGCAAAAATATGTATT
AGTAATACTACTCTAGTAATGAGGAGCTAAAATACACTGCTGAATGTGAT
GGCGTAACCATCTCTTGTGTGTGTGTTTTTTTTTTTTTTTAACCGTTGGC
CGGAACAGCTTGCAATACATTATGTTGATGTATTTTTTTGACACTATTTA
TAGTAGTAGGTAGCCACGGCTAGGCTAGGCCCGTGAGGCGTGCGTTGGCA
GGACGGTGTGCGGGTTTGGAGGCGCCACGGTGGCTGTAGTATTAATAGTA
TTGATAGTACTAATAGTATTTATAGTACCCACGGCAGGCATTCACCCACG
GAGGAAGCCGAGCGCGCGCTGCTGGCTGCTGGCTGCTGTGGGCCTCAAAA
TCGTACAGGATTTTAGTGTACAAAATCGGCCTCAGATGGTCACTCTAAAT
CGCTATTTAAAAATTGTCCAAAGCGCAATTAATTAGTACTAGTGGGTAGC
CACGGCTACCCCCGAGTATTTGAAAATGTAACTCCGTGAAGGGTTCAGCA
TACACAATCGGGCCTCAGTTGAAACAACTTGAAAAATAGGACTCTATAAA
TCGCTATGAAAACCGGGGCCTCAGTTTTTTATTGGTAAAAAATATGGTTG
ACTCTCGTATTAATTAATAAGGACAGTGAAGTTTTCAGGCCGGAAGGTTT
TGCACGTGTTTGTATTACAGTATACGATAAGGCATATACTTCGCTCAAGT
ATAGACCAGATTCATACCTGCGTCTGATTTGTTTTTGTATCGTATGCTTG
TTAGGGCGTTTCTTCCTATTTTCCATTTACTGCTGTGTGTGTTCCTCCCT
ATTAATAACGCATATATATATATATATATATATATCCTGTTCGTGCGTAT
CTTTTATCGTACCATAGGCCAAGAAGAAGCAAAAGCAGGGGAAGATCTCG
AAATTCTTCGCTCCGAAAGACTCCAAAAAGACGAAGGAGGCCGAGCCCAG
CGGAACGGCCTCTACCGCCGAGGACTCCGAGGACGCGGCAGGAGCTCC
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Coding sequence (CDS) from alignment at S-dermatodea_contig12028:3262..6009+

>mRNA_S-dermatodea_contig12028.1259.1 ID=mRNA_S-dermatodea_contig12028.1259.1|Name=mRNA_S-dermatodea_contig12028.1259.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=636bp|location=Sequence derived from alignment at S-dermatodea_contig12028:3262..6009+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGAGACGAAGCTACAGGAAAAGGATGTCGGCCCGATGCAAGAGCAAGA
CATTCTCCCGGGCTACTCTTCCGCTTGGTCGTGCTCCACGGTCAAGAAAG
GCTACGCCGGTACCGCGGTTTTCTTCACCAAGCAGGCCGAGCCGTGGACG
GGGGGCGGGGAAACAGGCGACGGGTCTGCATCCGAACCGCAGGAGACGAA
GCTACAGGAAAAGGATGTCGGCCCGATGCAAGAGCAAGACATTCTCCCGG
GCTACTCTTCCGCTTGGTCGTGCTCCACGGTCAAGAAAGGCTACGCCGGT
ACCGCGGTTTTCTTCACCAAGCAGGCCGAGCCGTGGACGGGGGGCGGGGA
AACAGGCGACGGGTCTGCATCCGAACCGGCCAAGAAGAAGCAAAAGCAGG
GGAAGATCTCGAAATTCTTCGCTCCGAAAGACTCCAAAAAGACGAAGGAG
GCCGAGCCCAGCGGAACGGCCTCTACCGCCGAGGACTCCGAGGACGCGGC
AGGAGCTGCCAAGAAGAAGCAAAAGCAGGGGAAGATCTCGAAATTCTTCG
CTCCGAAAGACTCCAAAAAGACGAAGGAGGCCGAGCCCAGCGGAACGGCC
TCTACCGCCGAGGACTCCGAGGACGCGGCAGGAGCT
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