mRNA_S-dermatodea_contig11996.1241.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11996.1241.1
Unique NamemRNA_S-dermatodea_contig11996.1241.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig11996.1241.1 vs. uniprot
Match: D7G2M6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2M6_ECTSI)

HSP 1 Score: 109 bits (272), Expect = 6.940e-30
Identity = 57/69 (82.61%), Postives = 62/69 (89.86%), Query Frame = 1 
Query:    1 MSSS-ADISVLGSTQNGDAADSEENALSFNDSDFYLNMDDVDIGPQIGQGAFSKVYLGRYLGELVSPRM 204
            MSSS AD S+LGSTQNGDA  S +NALSFNDSDFYLNMDDVDIGPQIGQGAFSKVYLGRY GELV+ ++
Sbjct:    1 MSSSLADASLLGSTQNGDAMGSGDNALSFNDSDFYLNMDDVDIGPQIGQGAFSKVYLGRYFGELVARKL 69
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BLAST of mRNA_S-dermatodea_contig11996.1241.1 vs. uniprot
Match: A0A6H5JRN5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JRN5_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 1.360e-25
Identity = 57/68 (83.82%), Postives = 60/68 (88.24%), Query Frame = 1 
Query:    1 MSSS-ADISVLGSTQNGDAADSEENALSFNDSDFYLNMDDVDIGPQIGQGAFSKVYLGRYLGELVSPR 201
            MSSS AD S LGSTQNGDA  S +NALSFNDSDFYLNMDDVDIGPQIGQGAFSKVYLGRY GELV+ +
Sbjct:    1 MSSSLADASFLGSTQNGDAIGSGDNALSFNDSDFYLNMDDVDIGPQIGQGAFSKVYLGRYFGELVAVK 68
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BLAST of mRNA_S-dermatodea_contig11996.1241.1 vs. uniprot
Match: A0A835ZKA0_9STRA (LISK family protein kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZKA0_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 2.980e-11
Identity = 30/41 (73.17%), Postives = 37/41 (90.24%), Query Frame = 1 
Query:   79 SFNDSDFYLNMDDVDIGPQIGQGAFSKVYLGRYLGELVSPR 201
            +F +SDFYLNMDDV +G QIGQGAFSKVY+G+YLGELV+ +
Sbjct:   31 AFEESDFYLNMDDVLLGAQIGQGAFSKVYVGKYLGELVAVK 71
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BLAST of mRNA_S-dermatodea_contig11996.1241.1 vs. uniprot
Match: A0A7S2SRX7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SRX7_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 1.540e-8
Identity = 25/46 (54.35%), Postives = 36/46 (78.26%), Query Frame = 1 
Query:   67 ENALSFNDSDFYLNMDDVDIGPQIGQGAFSKVYLGRYLGELVSPRM 204
            E   SF DSD+ L++ DV+IGP +G+G FSKVY+GRY GE+V+ ++
Sbjct:    6 ETIPSFEDSDYSLDLSDVEIGPLLGEGMFSKVYVGRYFGEVVAVKI 51
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BLAST of mRNA_S-dermatodea_contig11996.1241.1 vs. uniprot
Match: A0A836CNH5_9STRA (Kinase-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNH5_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 3.570e-8
Identity = 24/41 (58.54%), Postives = 35/41 (85.37%), Query Frame = 1 
Query:   79 SFNDSDFYLNMDDVDIGPQIGQGAFSKVYLGRYLGELVSPR 201
            +F+++D YL++ D+ +G QIGQGAFSKVY+GRY GELV+ +
Sbjct:    5 AFDEADLYLSLSDIILGAQIGQGAFSKVYVGRYQGELVAVK 45
[Close]
BLAST of mRNA_S-dermatodea_contig11996.1241.1 vs. uniprot
Match: D7G911_ECTSI (LISK family protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G911_ECTSI)

HSP 1 Score: 52.8 bits (125), Expect = 3.130e-6
Identity = 20/40 (50.00%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:   82 FNDSDFYLNMDDVDIGPQIGQGAFSKVYLGRYLGELVSPR 201
            F +SDFY+  + V IGP +G+GAFS VY+G+Y G++V+ +
Sbjct:   12 FEESDFYVEQEQVTIGPAVGEGAFSTVYIGKYFGDVVAVK 51
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11996.1241.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7G2M6_ECTSI6.940e-3082.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JRN5_9PHAE1.360e-2583.82Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZKA0_9STRA2.980e-1173.17LISK family protein kinase n=1 Tax=Tribonema minus... [more]
A0A7S2SRX7_9STRA1.540e-854.35Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A836CNH5_9STRA3.570e-858.54Kinase-like domain-containing protein (Fragment) n... [more]
D7G911_ECTSI3.130e-650.00LISK family protein kinase n=1 Tax=Ectocarpus sili... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11996contigS-dermatodea_contig11996:3252..3473 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProtein kinase-like domain
Ec32 orthologEc-11_002790.1
Exons1
Model size222
Cds size222
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924226.0513363-CDS-S-dermatodea_contig11996:3251..34731622924226.0513363-CDS-S-dermatodea_contig11996:3251..3473Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11996 3252..3473 +
1694079107.5323842-CDS-S-dermatodea_contig11996:3251..34731694079107.5323842-CDS-S-dermatodea_contig11996:3251..3473Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11996 3252..3473 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11996.1241.1prot_S-dermatodea_contig11996.1241.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11996 3252..3473 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11996.1241.1

>prot_S-dermatodea_contig11996.1241.1 ID=prot_S-dermatodea_contig11996.1241.1|Name=mRNA_S-dermatodea_contig11996.1241.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=74bp
MSSSADISVLGSTQNGDAADSEENALSFNDSDFYLNMDDVDIGPQIGQGA
FSKVYLGRYLGELVSPRMYSLFL*
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mRNA from alignment at S-dermatodea_contig11996:3252..3473+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11996.1241.1 ID=mRNA_S-dermatodea_contig11996.1241.1|Name=mRNA_S-dermatodea_contig11996.1241.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=222bp|location=Sequence derived from alignment at S-dermatodea_contig11996:3252..3473+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAGCTCGAGCGCCGATATCTCCGTCCTGGGCAGCACTCAGAACGGGGA
CGCGGCGGACTCGGAGGAAAACGCGCTGAGCTTCAATGATAGTGACTTCT
ACCTCAATATGGACGACGTGGACATCGGCCCTCAGATCGGACAGGGGGCC
TTTTCCAAGGTCTACCTCGGGCGATACCTGGGAGAGCTCGTGAGTCCCCG
TATGTACTCTTTGTTTTTGTAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig11996:3252..3473+

>mRNA_S-dermatodea_contig11996.1241.1 ID=mRNA_S-dermatodea_contig11996.1241.1|Name=mRNA_S-dermatodea_contig11996.1241.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=444bp|location=Sequence derived from alignment at S-dermatodea_contig11996:3252..3473+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAGCTCGAGCGCCGATATCTCCGTCCTGGGCAGCACTCAGAACGGGGA
CGCGGCGGACTCGGAGGAAAACGCGCTGAGCTTCAATGATAGTGACTTCT
ACCTCAATATGGACGACGTGGACATCGGCCCTCAGATCGGACAGGGGGCC
TTTTCCAAGGTCTACCTCGGGCGATACCTGGGAGAGCTCGTGAGTCCCCG
TATGTACTCTTTGTTTTTGTAGATGAGCTCGAGCGCCGATATCTCCGTCC
TGGGCAGCACTCAGAACGGGGACGCGGCGGACTCGGAGGAAAACGCGCTG
AGCTTCAATGATAGTGACTTCTACCTCAATATGGACGACGTGGACATCGG
CCCTCAGATCGGACAGGGGGCCTTTTCCAAGGTCTACCTCGGGCGATACC
TGGGAGAGCTCGTGAGTCCCCGTATGTACTCTTTGTTTTTGTAG
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