mRNA_S-dermatodea_contig11945.1218.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig11945.1218.1 vs. uniprot
Match: D7FP63_ECTSI (PsbB mRNA maturation factor Mbb1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP63_ECTSI) HSP 1 Score: 181 bits (459), Expect = 5.180e-51 Identity = 89/102 (87.25%), Postives = 94/102 (92.16%), Query Frame = 3
Query: 3 DGA-QERTGRPLAINLDLLSYQARQKNIKRDYAGAQRLYRDCVELDPRDGRGWLGLARHMQKIHKYDKAKRLFETGLENCADNPYLLQAFAVMEEQRGNQAK 305
DGA QERTGRPL INLDLLSYQA+QKN+K +Y A+RLYR CVELDPRDGRGWLGLAR MQKIHKYDKA+RLFE GLENCADNPYLLQAFAVMEEQRGNQAK
Sbjct: 329 DGAGQERTGRPLKINLDLLSYQAKQKNMKGNYREARRLYRTCVELDPRDGRGWLGLARQMQKIHKYDKAQRLFEAGLENCADNPYLLQAFAVMEEQRGNQAK 430
BLAST of mRNA_S-dermatodea_contig11945.1218.1 vs. uniprot
Match: A0A835Z1N5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1N5_9STRA) HSP 1 Score: 111 bits (277), Expect = 1.290e-26 Identity = 55/86 (63.95%), Postives = 64/86 (74.42%), Query Frame = 3
Query: 27 RPLAINLDLLSYQARQKNIKRDYAGAQRLYRDCVELDPRDGRGWLGLARHMQKIHKYDKAKRLFETGLENCADNPYLLQAFAVMEE 284
RPL INLDLLSY+A+Q I D A RLY+ CVELDPRDGRGW+GLAR+ K +A+ L+ETGL N DNPYLLQA+ VMEE
Sbjct: 29 RPLPINLDLLSYKAKQAMIAGDATEAVRLYKRCVELDPRDGRGWMGLARYEMKQGNSARARALWETGLSNSPDNPYLLQAYGVMEE 114
BLAST of mRNA_S-dermatodea_contig11945.1218.1 vs. uniprot
Match: A0A7S4DG14_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DG14_HETAK) HSP 1 Score: 109 bits (272), Expect = 3.780e-26 Identity = 53/93 (56.99%), Postives = 65/93 (69.89%), Query Frame = 3
Query: 27 RPLAINLDLLSYQARQKNIKRDYAGAQRLYRDCVELDPRDGRGWLGLARHMQKIHKYDKAKRLFETGLENCADNPYLLQAFAVMEEQRGNQAK 305
R L INLDL++Y ARQ IK D A R+Y+ C+ELDPRDGR WL LARH + +++ A++LF GL NPYLLQA+ VMEEQRGN K
Sbjct: 145 RALPINLDLMTYHARQAMIKGDEAVGLRIYKKCLELDPRDGRAWLALARHESRRKRFEVAEKLFLKGLTYSRGNPYLLQAYGVMEEQRGNSVK 237
BLAST of mRNA_S-dermatodea_contig11945.1218.1 vs. uniprot
Match: A0A7S2XUS2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XUS2_9STRA) HSP 1 Score: 84.3 bits (207), Expect = 5.410e-18 Identity = 43/113 (38.05%), Postives = 62/113 (54.87%), Query Frame = 3
Query: 27 RPLAINLDLLSYQARQKNIKRDYAGAQRLYRDCVELDPRDGRGWLGLAR----------------------HMQKIHKYDKAKRLFETGLENCADNPYLLQAFAVMEEQRGNQ 299
RP+ ++ DLL++QA+Q ++ A LYR C++L+PRD R WLGLAR H Y KAK +++ GL C +NPYLLQ V+EE++GN+
Sbjct: 31 RPVGLHFDLLAHQAKQALRNKNVTLAAALYRRCLQLNPRDARAWLGLARIETRGGVPLPTKGNAEGPGKPRHWSSHLNYVKAKEIYQQGLRRCPNNPYLLQGLGVLEEKKGNK 143
BLAST of mRNA_S-dermatodea_contig11945.1218.1 vs. uniprot
Match: A0A7S3B3F3_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3B3F3_9EUKA) HSP 1 Score: 84.7 bits (208), Expect = 5.510e-18 Identity = 42/96 (43.75%), Postives = 64/96 (66.67%), Query Frame = 3
Query: 12 QERTGRPLAINLDLLSYQARQKNIKRDYAGAQRLYRDCVELDPRDGRGWLGLARHMQKIHKYDKAKRLFETGLENCADNPYLLQAFAVMEEQRGNQ 299
+E RPL INLDLL+++AR + D GA Y+ C++L+P+DGR WLGL++ ++ + ++A RL + GL NPYLLQA+ ++E+RG Q
Sbjct: 60 KEEGSRPLRINLDLLTHRARVLVQRGDRKGAAATYKRCMQLEPQDGRAWLGLSQLRRRQGREEEAARLLQGGLRVDPANPYLLQAWGTLQERRGFQ 155
BLAST of mRNA_S-dermatodea_contig11945.1218.1 vs. uniprot
Match: A0A7S1TD61_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TD61_9RHOD) HSP 1 Score: 84.3 bits (207), Expect = 8.960e-17 Identity = 40/90 (44.44%), Postives = 58/90 (64.44%), Query Frame = 3
Query: 27 RPLAINLDLLSYQARQKNIKRDYAGAQRLYRDCVELDPRDGRGWLGLARHMQKIHKYDKAKRLFETGLENCADNPYLLQAFAVMEEQRGN 296
RPL IN+DL + ARQ + + + A RL+R CV++DP DGRGWLGLAR + + + ++ F + C N +LLQA+ +MEE+ GN
Sbjct: 61 RPLKINVDLSHFHARQSQKRGNSSEALRLFRRCVDMDPYDGRGWLGLARLLFLRGEEEASRETFRNAVRYCRSNSHLLQAWGIMEEKAGN 150
BLAST of mRNA_S-dermatodea_contig11945.1218.1 vs. uniprot
Match: A0A7S2SRU7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SRU7_9STRA) HSP 1 Score: 68.2 bits (165), Expect = 1.140e-12 Identity = 29/59 (49.15%), Postives = 43/59 (72.88%), Query Frame = 3
Query: 123 CVELDPRDGRGWLGLARHMQKIH-KYDKAKRLFETGLENCADNPYLLQAFAVMEEQRGN 296
+ +DP DGR WL LARH +++ K ++A+++F+ L +C NPYLLQAF V+EE+ GN
Sbjct: 1 AMRMDPLDGRAWLALARHKTQVNRKPEEARKVFQEALGHCEGNPYLLQAFGVLEEREGN 59
BLAST of mRNA_S-dermatodea_contig11945.1218.1 vs. uniprot
Match: A0A1S4ASU2_TOBAC (protein high chlorophyll fluorescent 107-like n=1 Tax=Nicotiana tabacum TaxID=4097 RepID=A0A1S4ASU2_TOBAC) HSP 1 Score: 68.9 bits (167), Expect = 1.380e-11 Identity = 31/91 (34.07%), Postives = 58/91 (63.74%), Query Frame = 3
Query: 27 RPLAINLDLLSYQARQKNIKRDYAGAQRLYRDCVELDPRDGRGWLGLARHMQKIHKYDKAKRLFETGLENC-ADNPYLLQAFAVMEEQRGN 296
+PL +NLDL Y+A+ K YA A+++ + C+++ P DGR ++ L + + K K ++A+ ++E G + +NPY+ Q +A++E + GN
Sbjct: 171 KPLKVNLDLALYRAKILARKYQYADAEKILQQCIDVWPEDGRPYVALGKILSKQSKLNEARTVYEKGCQATQGENPYIWQCWAILENRMGN 261
BLAST of mRNA_S-dermatodea_contig11945.1218.1 vs. uniprot
Match: M1ATQ9_SOLTU (Pre-mRNA splicing factor n=6 Tax=Solanaceae TaxID=4070 RepID=M1ATQ9_SOLTU) HSP 1 Score: 69.3 bits (168), Expect = 1.740e-11 Identity = 31/91 (34.07%), Postives = 58/91 (63.74%), Query Frame = 3
Query: 27 RPLAINLDLLSYQARQKNIKRDYAGAQRLYRDCVELDPRDGRGWLGLARHMQKIHKYDKAKRLFETGLENC-ADNPYLLQAFAVMEEQRGN 296
+PL +NLDL Y+A+ K YA A+++ + C+++ P DGR ++ L + + K K ++A+ ++E G + +NPY+ Q +A++E + GN
Sbjct: 172 KPLKVNLDLALYKAKILARKFQYADAEKILQQCIDVWPEDGRSYVALGKILSKQSKLNEARTVYEKGCQATQGENPYIWQCWAILENRMGN 262
BLAST of mRNA_S-dermatodea_contig11945.1218.1 vs. uniprot
Match: A0A2G2ZGV3_CAPAN (Uncharacterized protein n=8 Tax=Solanoideae TaxID=424551 RepID=A0A2G2ZGV3_CAPAN) HSP 1 Score: 68.9 bits (167), Expect = 2.380e-11 Identity = 31/91 (34.07%), Postives = 57/91 (62.64%), Query Frame = 3
Query: 27 RPLAINLDLLSYQARQKNIKRDYAGAQRLYRDCVELDPRDGRGWLGLARHMQKIHKYDKAKRLFETGLENC-ADNPYLLQAFAVMEEQRGN 296
+PL +NLDL Y+A+ K YA A+++ C+++ P DGR ++ L + + K K ++A+ ++E G + +NPY+ Q +A++E + GN
Sbjct: 171 KPLKVNLDLALYKAKILARKFQYADAEKILEQCIDVWPEDGRSYVALGKILSKQSKLNEARAVYEKGCQATQGENPYIWQCWAILENRMGN 261 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11945.1218.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 18
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig11945.1218.1 >prot_S-dermatodea_contig11945.1218.1 ID=prot_S-dermatodea_contig11945.1218.1|Name=mRNA_S-dermatodea_contig11945.1218.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=110bp MTGRKSARGGRSRLTLTCSVIRLGKKTLSATTPGLRGCTATAWSWTPGTGback to top mRNA from alignment at S-dermatodea_contig11945:4243..7158+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig11945.1218.1 ID=mRNA_S-dermatodea_contig11945.1218.1|Name=mRNA_S-dermatodea_contig11945.1218.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2916bp|location=Sequence derived from alignment at S-dermatodea_contig11945:4243..7158+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig11945:4243..7158+ >mRNA_S-dermatodea_contig11945.1218.1 ID=mRNA_S-dermatodea_contig11945.1218.1|Name=mRNA_S-dermatodea_contig11945.1218.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=660bp|location=Sequence derived from alignment at S-dermatodea_contig11945:4243..7158+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |