mRNA_S-dermatodea_contig11944.1217.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig11944.1217.1 vs. uniprot
Match: A0A6H5J6U0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6U0_9PHAE) HSP 1 Score: 185 bits (470), Expect = 1.310e-55 Identity = 119/203 (58.62%), Postives = 140/203 (68.97%), Query Frame = -2
Query: 4 MAARAHASYTVGRYEEALSQLSHLTIA---------SASGSSTDFRTLHNRALCEHGARGFSDPSELEAALQSIQLQLKGKSREG-GGEGASDEED------EAGQAVRASTKQ--AAELVGSSGXXXXXXXXXAAGLADLDADTSVLLYNLSALHFQQKQYGAAQAVLEQLFLHIGPLDDSLAIHICLLLLDVLCHSARGNL 558
MA +A ASYT G+Y EALS LS+L++A S+S +S+DFR HN AL EHGARGF+DP++LE+ L++I +L S G G SD ED E A R S++ A +VG+SG AGLA+LD D SVLLYNLSAL FQQKQYGAAQAVLE+LFLHI PLDDSLAIHICLLLLDVLCHSARGNL
Sbjct: 1 MATQALASYTAGKYSEALSHLSNLSVAPGSSGDAGGSSSDASSDFRAQHNLALSEHGARGFADPAKLESTLRAIHSRLARASASGDGSNNYSDAEDDDASDQEQANASRRSSRALTGALVVGTSGGARAAATA-VAGLAELDVDASVLLYNLSALRFQQKQYGAAQAVLERLFLHIEPLDDSLAIHICLLLLDVLCHSARGNL 202
BLAST of mRNA_S-dermatodea_contig11944.1217.1 vs. uniprot
Match: D7FLM7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLM7_ECTSI) HSP 1 Score: 170 bits (431), Expect = 1.990e-45 Identity = 112/205 (54.63%), Postives = 132/205 (64.39%), Query Frame = -2
Query: 4 MAARAHASYTVGRYEEALSQLSHLTIA---------SASGSSTDFRTLHNRALCEHGARGFSDPSELEAALQSIQLQLKGKSREGGGEGASDEEDEAGQ-----------AVRASTKQAAELVGSSGXXXXXXXXXAAGLADLDADTSVLLYNLSALHFQQKQYGAAQAVLEQLFLHIGPLDDSLAIHICLLLLDVLCHSARGNL 558
MA +A +SYT G+Y EALS LS L++A S+S +S DFR HN AL EHGARGF+DP++LE+ L++I +L S G G + RA T +VG+SG AAGLA+LD D SVLLYNLSAL FQQKQYGAAQAVLE+LFLH+ PLDDSLAIHICLLLLDVLCHSARGNL
Sbjct: 1 MATQALSSYTAGKYSEALSHLSSLSVAPGSSGDAGGSSSDASNDFRAQHNLALSEHGARGFADPAKLESTLRAIHSRLARASAGGDGXXXXXXXXXXXXXXXXXXXXXXXSSRALTGTL--VVGTSGGARAAATA-AAGLAELDVDASVLLYNLSALRFQQKQYGAAQAVLERLFLHMEPLDDSLAIHICLLLLDVLCHSARGNL 202
BLAST of mRNA_S-dermatodea_contig11944.1217.1 vs. uniprot
Match: A0A836CBQ7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBQ7_9STRA) HSP 1 Score: 133 bits (335), Expect = 1.690e-32 Identity = 87/195 (44.62%), Postives = 114/195 (58.46%), Query Frame = -2
Query: 4 MAARAHASYTVGRYEEALSQLSHLTIAS--ASGSSTDFRTLHNRALCEHGARGFSDPSELEAALQSIQLQLKGKSREGGGEG-----ASDE-EDEAGQAVRAST--KQAAELVGSSGXXXXXXXXXAAGLADLDADTSVLLYNLSALHFQQKQYGAAQAVLEQLFLHIGPLDDSLAIHICLLLLDVLCHSARGNL 558
+AA+AH Y G Y+ L LS L + D HN A+CE+ GF++ + AAL+ ++ +L+ ++ G +G A D ED +G A ST +Q S+ A GLADLD D SV+LYN++ALHFQQ QYGAA+A+LE LFLHI P+D+ LAIHIC LLLD LCHSARG L
Sbjct: 20 LAAQAHELYNSGDYDATLRLLSELAARHEPSDEEEEDLTLTHNTAICEYAKTGFAETQQFGAALRDVRSKLRARASMGSSDGTRATGAGDGGEDASGGAASLSTAYRQGIPFTESAASA-------AEGLADLDTDASVVLYNMAALHFQQMQYGAARAILEHLFLHIEPVDEPLAIHICFLLLDALCHSARGAL 207
BLAST of mRNA_S-dermatodea_contig11944.1217.1 vs. uniprot
Match: K8YV70_NANGC (CCR4-NOT transcription complex subunit 10 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YV70_NANGC) HSP 1 Score: 94.4 bits (233), Expect = 7.340e-19 Identity = 68/185 (36.76%), Postives = 94/185 (50.81%), Query Frame = -2
Query: 4 MAARAHASYTVGRYEEALSQLSHLTIASASGSSTDFRTLHNRALCEHGARGFSDPSELEAALQSIQLQLKGKSREGGGEGASDEEDEAGQAVRASTKQAAELVGSSGXXXXXXXXXAAGLADLDADTSVLLYNLSALHFQQKQYGAAQAVLEQLFLHIGPLDDSLAIHICLLLLDVLCHSARGNL 558
+A +A A Y VG+YE+AL L L++ G D R N L EH GF P ++ + +++ LK +S + G A RA + G D + DTSVLLYNL+AL+F +KQYGA+Q +L LF I L++ LA+ +C L LDVL HSARGN+
Sbjct: 9 IACQARAFYGVGKYEKALECLQQLSMQPGGGD--DPRLQGNLVLTEHAKGGFKRPLIIKDRITTLRNSLKTRSEKVGS---------VQGAFRAKESLRLDAEDEDGDEEAD---------DTETDTSVLLYNLAALNFHEKQYGASQHILHALFARIEVLEEPLAVQVCFLFLDVLLHSARGNI 173
BLAST of mRNA_S-dermatodea_contig11944.1217.1 vs. uniprot
Match: A0A7S2XY66_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XY66_9STRA) HSP 1 Score: 87.4 bits (215), Expect = 9.540e-19 Identity = 41/65 (63.08%), Postives = 52/65 (80.00%), Query Frame = -2
Query: 4 ADLDADTSVLLYNLSALHFQQKQYGAAQAVLEQLFLHIGPLDDSLAIHICLLLLDVLCHSARGNL 198
A D D S+LLYNL+ LHFQ+K+YG + VLE L+L+I P+D+ LA+HIC LLLDVL H+ARGNL
Sbjct: 12 ATADPDPSILLYNLALLHFQEKRYGECRRVLEHLYLNIEPVDEDLALHICFLLLDVLIHTARGNL 76
BLAST of mRNA_S-dermatodea_contig11944.1217.1 vs. uniprot
Match: A0A6P4AHJ2_ZIZJJ (CCR4-NOT transcription complex subunit 10-like n=3 Tax=Ziziphus jujuba TaxID=326968 RepID=A0A6P4AHJ2_ZIZJJ) HSP 1 Score: 72.4 bits (176), Expect = 4.700e-12 Identity = 55/150 (36.67%), Postives = 79/150 (52.67%), Query Frame = -2
Query: 16 DFRTLHNRALCEHGARGFSDPSELEAALQSIQLQLKGKSREGGGEGASDEEDEAGQAVRASTKQAAELVGSSGXXXXXXXXXAAGLADLDA-DTSVLLYNLSALHFQQKQYGAAQAVLEQLFLHIGPLDDSLAIHICLLLLDV--LCHSA 456
D + LHN A+ E+ RG SDP L L +++ Q + +R AS E+ EA A K GSS AG+ +D DTSV + N++ + F +Y A ++LE L+ +IGP+D++ A+HICLL LDV CH A
Sbjct: 64 DPKVLHNIAIAEYFRRGCSDPKSLLEELYNVKKQSEYLAR------ASVEQTEA--AGSQGNKGVLGSKGSSMVPNPFSAVSGAGIIYMDEFDTSVAMLNIAVIWFHLHEYAKALSILEPLYQNIGPIDETTALHICLLFLDVGLTCHEA 205
BLAST of mRNA_S-dermatodea_contig11944.1217.1 vs. uniprot
Match: UPI001CB90FEA (CCR4-NOT transcription complex subunit 10 isoform X1 n=2 Tax=Erigeron canadensis TaxID=72917 RepID=UPI001CB90FEA) HSP 1 Score: 69.3 bits (168), Expect = 3.110e-10 Identity = 51/183 (27.87%), Postives = 91/183 (49.73%), Query Frame = -2
Query: 16 MAARAHASYTVGRYEEALSQLSHLTIASASGSSTDFRTLHNRALCEHGARGFSDPSELEAALQSIQLQLKGKSREGGGEGASDEEDEAGQAVRASTKQAAELVGSSGXXXXXXXXXAAGLADLDADTSVLLYNLSALHFQQKQYGAAQAVLEQLFLHIGPLDDSLAIHICLLLLDV--LCHSA 558
+A A+ + +G+Y + L L+ + A D + LHN A+ E+ GFS+P AL +++ + + + G E +A+ + K A S A G++ D D S+ ++N++ + + +Y ++LE+L+ +I PLD+ +A H+CLLLLDV +CH A
Sbjct: 41 LAKEAYVMFQLGKYSDCLKLLNQILDKKAD----DPKILHNIAIVENFQDGFSNPKRFLEALDNLKKRNERLAHSAG---------ENAEALNSMIKAAGNKGNSVAGNSASTINNAQGVSADDFDISMTMFNIAVILYHLHEYEKCSSILERLYQNIEPLDERVARHVCLLLLDVSFVCHQA 210
BLAST of mRNA_S-dermatodea_contig11944.1217.1 vs. uniprot
Match: A0A8K0HJR5_9ROSA (Uncharacterized protein n=1 Tax=Rhamnella rubrinervis TaxID=2594499 RepID=A0A8K0HJR5_9ROSA) HSP 1 Score: 69.3 bits (168), Expect = 3.140e-10 Identity = 50/157 (31.85%), Postives = 80/157 (50.96%), Query Frame = -2
Query: 7 DFRTLHNRALCEHGARGFSDPSELEAALQSIQLQLKGKSREGGGEGASDEEDEAGQAVRASTKQAAEL-VGSSGXXXXXXXXXAAGLADL----DADTSVLLYNLSALHFQQKQYGAAQAVLEQLFLHIGPLDDSLAIHICLLLLDV--LCHSARGN 456
D + LHN A+ E+ G SDP L L +++ + + +R +G+ V A+ Q ++ +GS G AA + + DT V N++ + F ++Y A +VLE L+ +IGP+D++ A+HICLLLLDV CH A +
Sbjct: 63 DPKVLHNIAIAEYSRDGCSDPKRLLEVLYNVKKRSEELARA------------SGEQVEAAGSQGSKAALGSKGTSTVLHPFSAASSDSIIYMDEFDTWVATLNIAVIWFHLREYAKALSVLEPLYQNIGPIDETTALHICLLLLDVGLACHDASKS 207
BLAST of mRNA_S-dermatodea_contig11944.1217.1 vs. uniprot
Match: A0A1Y1HRV1_KLENI (CCR4-NOT transcription complex subunit 10 n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HRV1_KLENI) HSP 1 Score: 68.2 bits (165), Expect = 7.800e-10 Identity = 51/166 (30.72%), Postives = 78/166 (46.99%), Query Frame = -2
Query: 31 YEEALSQLSHLTIASASGSSTDFRTLHNRALCEHGARGFSDPSELEAALQSIQLQLKGKSREGGGEGASDEEDEAGQAVRASTKQAAELVGSSGXXXXXXXXXAAGLAD---LDADTSVLLYNLSALHFQQKQYGAAQAVLEQLFLHIGPLDDSLAIHICLLLLDV 519
Y+ L L +T++ + D + LHNRAL + G + L+ LQ+ Q + DE QA A A G++ AA A+ D T+ L YNL+ +H+QQ +Y A +LE L+ ++ PLD+ +A+ +CLLLLDV
Sbjct: 27 YQRCLQVLDQVTLSP----NKDVKVLHNRALADFYQAGGKEAQLLQERLQACQAR----------------NDELRQAAEAELDGAVSPSGATSFRESFSADGAAKAAEPLSWDYQTATLTYNLALVHYQQHRYSQAATLLEPLYTNLEPLDEDVALRVCLLLLDV 172
BLAST of mRNA_S-dermatodea_contig11944.1217.1 vs. uniprot
Match: A0A200PNR3_9MAGN (Tetratricopeptide repeat-containing domain n=1 Tax=Macleaya cordata TaxID=56857 RepID=A0A200PNR3_9MAGN) HSP 1 Score: 66.6 bits (161), Expect = 2.630e-9 Identity = 48/146 (32.88%), Postives = 74/146 (50.68%), Query Frame = -2
Query: 31 DFRTLHNRALCEHGARGFSDPSELEAALQSIQLQLKGKSREGGGEGASDEEDEAGQAVRASTKQAAELVGSSGXXXXXXXXXAAGLADL----DADTSVLLYNLSALHFQQKQYGAAQAVLEQLFLHIGPLDDSLAIHICLLLLDV 456
D + LHN A+ E+ G SDP +L L ++ + + +R AG+ V AS+ + + GS G AA + + DTSV N++ + F +Y A +VLE L+ +I P+D++ A+HICLLLLDV
Sbjct: 61 DPKVLHNIAVAEYFRDGCSDPRKLLEVLNKVKKRSEDLARA------------AGEQVEASSVGNSVISGSKGSSTTLHQFSAANTTSIAYTDEFDTSVAKLNIAVILFHLHEYANALSVLEPLYQNIEPIDETTALHICLLLLDV 194 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11944.1217.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig11944.1217.1 >prot_S-dermatodea_contig11944.1217.1 ID=prot_S-dermatodea_contig11944.1217.1|Name=mRNA_S-dermatodea_contig11944.1217.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=148bp MQVSSSRVAQHVEQEQANVDRERVVQRPDVQEELLEDGLRRPVLFLLEVQback to top mRNA from alignment at S-dermatodea_contig11944:1732..2347+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig11944.1217.1 ID=mRNA_S-dermatodea_contig11944.1217.1|Name=mRNA_S-dermatodea_contig11944.1217.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=616bp|location=Sequence derived from alignment at S-dermatodea_contig11944:1732..2347+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig11944:1732..2347+ >mRNA_S-dermatodea_contig11944.1217.1 ID=mRNA_S-dermatodea_contig11944.1217.1|Name=mRNA_S-dermatodea_contig11944.1217.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=888bp|location=Sequence derived from alignment at S-dermatodea_contig11944:1732..2347+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |