mRNA_S-dermatodea_contig11944.1217.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11944.1217.1
Unique NamemRNA_S-dermatodea_contig11944.1217.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig11944.1217.1 vs. uniprot
Match: A0A6H5J6U0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6U0_9PHAE)

HSP 1 Score: 185 bits (470), Expect = 1.310e-55
Identity = 119/203 (58.62%), Postives = 140/203 (68.97%), Query Frame = -2
Query:    4 MAARAHASYTVGRYEEALSQLSHLTIA---------SASGSSTDFRTLHNRALCEHGARGFSDPSELEAALQSIQLQLKGKSREG-GGEGASDEED------EAGQAVRASTKQ--AAELVGSSGXXXXXXXXXAAGLADLDADTSVLLYNLSALHFQQKQYGAAQAVLEQLFLHIGPLDDSLAIHICLLLLDVLCHSARGNL 558
            MA +A ASYT G+Y EALS LS+L++A         S+S +S+DFR  HN AL EHGARGF+DP++LE+ L++I  +L   S  G G    SD ED      E   A R S++    A +VG+SG          AGLA+LD D SVLLYNLSAL FQQKQYGAAQAVLE+LFLHI PLDDSLAIHICLLLLDVLCHSARGNL
Sbjct:    1 MATQALASYTAGKYSEALSHLSNLSVAPGSSGDAGGSSSDASSDFRAQHNLALSEHGARGFADPAKLESTLRAIHSRLARASASGDGSNNYSDAEDDDASDQEQANASRRSSRALTGALVVGTSGGARAAATA-VAGLAELDVDASVLLYNLSALRFQQKQYGAAQAVLERLFLHIEPLDDSLAIHICLLLLDVLCHSARGNL 202          
BLAST of mRNA_S-dermatodea_contig11944.1217.1 vs. uniprot
Match: D7FLM7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLM7_ECTSI)

HSP 1 Score: 170 bits (431), Expect = 1.990e-45
Identity = 112/205 (54.63%), Postives = 132/205 (64.39%), Query Frame = -2
Query:    4 MAARAHASYTVGRYEEALSQLSHLTIA---------SASGSSTDFRTLHNRALCEHGARGFSDPSELEAALQSIQLQLKGKSREGGGEGASDEEDEAGQ-----------AVRASTKQAAELVGSSGXXXXXXXXXAAGLADLDADTSVLLYNLSALHFQQKQYGAAQAVLEQLFLHIGPLDDSLAIHICLLLLDVLCHSARGNL 558
            MA +A +SYT G+Y EALS LS L++A         S+S +S DFR  HN AL EHGARGF+DP++LE+ L++I  +L   S  G G                       + RA T     +VG+SG         AAGLA+LD D SVLLYNLSAL FQQKQYGAAQAVLE+LFLH+ PLDDSLAIHICLLLLDVLCHSARGNL
Sbjct:    1 MATQALSSYTAGKYSEALSHLSSLSVAPGSSGDAGGSSSDASNDFRAQHNLALSEHGARGFADPAKLESTLRAIHSRLARASAGGDGXXXXXXXXXXXXXXXXXXXXXXXSSRALTGTL--VVGTSGGARAAATA-AAGLAELDVDASVLLYNLSALRFQQKQYGAAQAVLERLFLHMEPLDDSLAIHICLLLLDVLCHSARGNL 202          
BLAST of mRNA_S-dermatodea_contig11944.1217.1 vs. uniprot
Match: A0A836CBQ7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBQ7_9STRA)

HSP 1 Score: 133 bits (335), Expect = 1.690e-32
Identity = 87/195 (44.62%), Postives = 114/195 (58.46%), Query Frame = -2
Query:    4 MAARAHASYTVGRYEEALSQLSHLTIAS--ASGSSTDFRTLHNRALCEHGARGFSDPSELEAALQSIQLQLKGKSREGGGEG-----ASDE-EDEAGQAVRAST--KQAAELVGSSGXXXXXXXXXAAGLADLDADTSVLLYNLSALHFQQKQYGAAQAVLEQLFLHIGPLDDSLAIHICLLLLDVLCHSARGNL 558
            +AA+AH  Y  G Y+  L  LS L      +     D    HN A+CE+   GF++  +  AAL+ ++ +L+ ++  G  +G     A D  ED +G A   ST  +Q      S+          A GLADLD D SV+LYN++ALHFQQ QYGAA+A+LE LFLHI P+D+ LAIHIC LLLD LCHSARG L
Sbjct:   20 LAAQAHELYNSGDYDATLRLLSELAARHEPSDEEEEDLTLTHNTAICEYAKTGFAETQQFGAALRDVRSKLRARASMGSSDGTRATGAGDGGEDASGGAASLSTAYRQGIPFTESAASA-------AEGLADLDTDASVVLYNMAALHFQQMQYGAARAILEHLFLHIEPVDEPLAIHICFLLLDALCHSARGAL 207          
BLAST of mRNA_S-dermatodea_contig11944.1217.1 vs. uniprot
Match: K8YV70_NANGC (CCR4-NOT transcription complex subunit 10 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YV70_NANGC)

HSP 1 Score: 94.4 bits (233), Expect = 7.340e-19
Identity = 68/185 (36.76%), Postives = 94/185 (50.81%), Query Frame = -2
Query:    4 MAARAHASYTVGRYEEALSQLSHLTIASASGSSTDFRTLHNRALCEHGARGFSDPSELEAALQSIQLQLKGKSREGGGEGASDEEDEAGQAVRASTKQAAELVGSSGXXXXXXXXXAAGLADLDADTSVLLYNLSALHFQQKQYGAAQAVLEQLFLHIGPLDDSLAIHICLLLLDVLCHSARGNL 558
            +A +A A Y VG+YE+AL  L  L++    G   D R   N  L EH   GF  P  ++  + +++  LK +S + G             A RA      +     G              D + DTSVLLYNL+AL+F +KQYGA+Q +L  LF  I  L++ LA+ +C L LDVL HSARGN+
Sbjct:    9 IACQARAFYGVGKYEKALECLQQLSMQPGGGD--DPRLQGNLVLTEHAKGGFKRPLIIKDRITTLRNSLKTRSEKVGS---------VQGAFRAKESLRLDAEDEDGDEEAD---------DTETDTSVLLYNLAALNFHEKQYGASQHILHALFARIEVLEEPLAVQVCFLFLDVLLHSARGNI 173          
BLAST of mRNA_S-dermatodea_contig11944.1217.1 vs. uniprot
Match: A0A7S2XY66_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XY66_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 9.540e-19
Identity = 41/65 (63.08%), Postives = 52/65 (80.00%), Query Frame = -2
Query:    4 ADLDADTSVLLYNLSALHFQQKQYGAAQAVLEQLFLHIGPLDDSLAIHICLLLLDVLCHSARGNL 198
            A  D D S+LLYNL+ LHFQ+K+YG  + VLE L+L+I P+D+ LA+HIC LLLDVL H+ARGNL
Sbjct:   12 ATADPDPSILLYNLALLHFQEKRYGECRRVLEHLYLNIEPVDEDLALHICFLLLDVLIHTARGNL 76          
BLAST of mRNA_S-dermatodea_contig11944.1217.1 vs. uniprot
Match: A0A6P4AHJ2_ZIZJJ (CCR4-NOT transcription complex subunit 10-like n=3 Tax=Ziziphus jujuba TaxID=326968 RepID=A0A6P4AHJ2_ZIZJJ)

HSP 1 Score: 72.4 bits (176), Expect = 4.700e-12
Identity = 55/150 (36.67%), Postives = 79/150 (52.67%), Query Frame = -2
Query:   16 DFRTLHNRALCEHGARGFSDPSELEAALQSIQLQLKGKSREGGGEGASDEEDEAGQAVRASTKQAAELVGSSGXXXXXXXXXAAGLADLDA-DTSVLLYNLSALHFQQKQYGAAQAVLEQLFLHIGPLDDSLAIHICLLLLDV--LCHSA 456
            D + LHN A+ E+  RG SDP  L   L +++ Q +  +R      AS E+ EA  A     K      GSS           AG+  +D  DTSV + N++ + F   +Y  A ++LE L+ +IGP+D++ A+HICLL LDV   CH A
Sbjct:   64 DPKVLHNIAIAEYFRRGCSDPKSLLEELYNVKKQSEYLAR------ASVEQTEA--AGSQGNKGVLGSKGSSMVPNPFSAVSGAGIIYMDEFDTSVAMLNIAVIWFHLHEYAKALSILEPLYQNIGPIDETTALHICLLFLDVGLTCHEA 205          
BLAST of mRNA_S-dermatodea_contig11944.1217.1 vs. uniprot
Match: UPI001CB90FEA (CCR4-NOT transcription complex subunit 10 isoform X1 n=2 Tax=Erigeron canadensis TaxID=72917 RepID=UPI001CB90FEA)

HSP 1 Score: 69.3 bits (168), Expect = 3.110e-10
Identity = 51/183 (27.87%), Postives = 91/183 (49.73%), Query Frame = -2
Query:   16 MAARAHASYTVGRYEEALSQLSHLTIASASGSSTDFRTLHNRALCEHGARGFSDPSELEAALQSIQLQLKGKSREGGGEGASDEEDEAGQAVRASTKQAAELVGSSGXXXXXXXXXAAGLADLDADTSVLLYNLSALHFQQKQYGAAQAVLEQLFLHIGPLDDSLAIHICLLLLDV--LCHSA 558
            +A  A+  + +G+Y + L  L+ +    A     D + LHN A+ E+   GFS+P     AL +++ + +  +   G         E  +A+ +  K A     S           A G++  D D S+ ++N++ + +   +Y    ++LE+L+ +I PLD+ +A H+CLLLLDV  +CH A
Sbjct:   41 LAKEAYVMFQLGKYSDCLKLLNQILDKKAD----DPKILHNIAIVENFQDGFSNPKRFLEALDNLKKRNERLAHSAG---------ENAEALNSMIKAAGNKGNSVAGNSASTINNAQGVSADDFDISMTMFNIAVILYHLHEYEKCSSILERLYQNIEPLDERVARHVCLLLLDVSFVCHQA 210          
BLAST of mRNA_S-dermatodea_contig11944.1217.1 vs. uniprot
Match: A0A8K0HJR5_9ROSA (Uncharacterized protein n=1 Tax=Rhamnella rubrinervis TaxID=2594499 RepID=A0A8K0HJR5_9ROSA)

HSP 1 Score: 69.3 bits (168), Expect = 3.140e-10
Identity = 50/157 (31.85%), Postives = 80/157 (50.96%), Query Frame = -2
Query:    7 DFRTLHNRALCEHGARGFSDPSELEAALQSIQLQLKGKSREGGGEGASDEEDEAGQAVRASTKQAAEL-VGSSGXXXXXXXXXAAGLADL----DADTSVLLYNLSALHFQQKQYGAAQAVLEQLFLHIGPLDDSLAIHICLLLLDV--LCHSARGN 456
            D + LHN A+ E+   G SDP  L   L +++ + +  +R             +G+ V A+  Q ++  +GS G         AA    +    + DT V   N++ + F  ++Y  A +VLE L+ +IGP+D++ A+HICLLLLDV   CH A  +
Sbjct:   63 DPKVLHNIAIAEYSRDGCSDPKRLLEVLYNVKKRSEELARA------------SGEQVEAAGSQGSKAALGSKGTSTVLHPFSAASSDSIIYMDEFDTWVATLNIAVIWFHLREYAKALSVLEPLYQNIGPIDETTALHICLLLLDVGLACHDASKS 207          
BLAST of mRNA_S-dermatodea_contig11944.1217.1 vs. uniprot
Match: A0A1Y1HRV1_KLENI (CCR4-NOT transcription complex subunit 10 n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HRV1_KLENI)

HSP 1 Score: 68.2 bits (165), Expect = 7.800e-10
Identity = 51/166 (30.72%), Postives = 78/166 (46.99%), Query Frame = -2
Query:   31 YEEALSQLSHLTIASASGSSTDFRTLHNRALCEHGARGFSDPSELEAALQSIQLQLKGKSREGGGEGASDEEDEAGQAVRASTKQAAELVGSSGXXXXXXXXXAAGLAD---LDADTSVLLYNLSALHFQQKQYGAAQAVLEQLFLHIGPLDDSLAIHICLLLLDV 519
            Y+  L  L  +T++     + D + LHNRAL +    G  +   L+  LQ+ Q +                 DE  QA  A    A    G++          AA  A+    D  T+ L YNL+ +H+QQ +Y  A  +LE L+ ++ PLD+ +A+ +CLLLLDV
Sbjct:   27 YQRCLQVLDQVTLSP----NKDVKVLHNRALADFYQAGGKEAQLLQERLQACQAR----------------NDELRQAAEAELDGAVSPSGATSFRESFSADGAAKAAEPLSWDYQTATLTYNLALVHYQQHRYSQAATLLEPLYTNLEPLDEDVALRVCLLLLDV 172          
BLAST of mRNA_S-dermatodea_contig11944.1217.1 vs. uniprot
Match: A0A200PNR3_9MAGN (Tetratricopeptide repeat-containing domain n=1 Tax=Macleaya cordata TaxID=56857 RepID=A0A200PNR3_9MAGN)

HSP 1 Score: 66.6 bits (161), Expect = 2.630e-9
Identity = 48/146 (32.88%), Postives = 74/146 (50.68%), Query Frame = -2
Query:   31 DFRTLHNRALCEHGARGFSDPSELEAALQSIQLQLKGKSREGGGEGASDEEDEAGQAVRASTKQAAELVGSSGXXXXXXXXXAAGLADL----DADTSVLLYNLSALHFQQKQYGAAQAVLEQLFLHIGPLDDSLAIHICLLLLDV 456
            D + LHN A+ E+   G SDP +L   L  ++ + +  +R             AG+ V AS+   + + GS G         AA    +    + DTSV   N++ + F   +Y  A +VLE L+ +I P+D++ A+HICLLLLDV
Sbjct:   61 DPKVLHNIAVAEYFRDGCSDPRKLLEVLNKVKKRSEDLARA------------AGEQVEASSVGNSVISGSKGSSTTLHQFSAANTTSIAYTDEFDTSVAKLNIAVILFHLHEYANALSVLEPLYQNIEPIDETTALHICLLLLDV 194          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11944.1217.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J6U0_9PHAE1.310e-5558.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FLM7_ECTSI1.990e-4554.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CBQ7_9STRA1.690e-3244.62Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
K8YV70_NANGC7.340e-1936.76CCR4-NOT transcription complex subunit 10 n=3 Tax=... [more]
A0A7S2XY66_9STRA9.540e-1963.08Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A6P4AHJ2_ZIZJJ4.700e-1236.67CCR4-NOT transcription complex subunit 10-like n=3... [more]
UPI001CB90FEA3.110e-1027.87CCR4-NOT transcription complex subunit 10 isoform ... [more]
A0A8K0HJR5_9ROSA3.140e-1031.85Uncharacterized protein n=1 Tax=Rhamnella rubriner... [more]
A0A1Y1HRV1_KLENI7.800e-1030.72CCR4-NOT transcription complex subunit 10 n=1 Tax=... [more]
A0A200PNR3_9MAGN2.630e-932.88Tetratricopeptide repeat-containing domain n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11944contigS-dermatodea_contig11944:1732..2347 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size616
Cds size444
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924224.2503757-CDS-S-dermatodea_contig11944:1731..21751622924224.2503757-CDS-S-dermatodea_contig11944:1731..2175Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11944 1732..2175 +
1694079106.302784-CDS-S-dermatodea_contig11944:1731..21751694079106.302784-CDS-S-dermatodea_contig11944:1731..2175Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11944 1732..2175 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924224.2603705-UTR-S-dermatodea_contig11944:2175..23471622924224.2603705-UTR-S-dermatodea_contig11944:2175..2347Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11944 2176..2347 +
1694079106.3103611-UTR-S-dermatodea_contig11944:2175..23471694079106.3103611-UTR-S-dermatodea_contig11944:2175..2347Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11944 2176..2347 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11944.1217.1prot_S-dermatodea_contig11944.1217.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11944 1732..2175 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11944.1217.1

>prot_S-dermatodea_contig11944.1217.1 ID=prot_S-dermatodea_contig11944.1217.1|Name=mRNA_S-dermatodea_contig11944.1217.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=148bp
MQVSSSRVAQHVEQEQANVDRERVVQRPDVQEELLEDGLRRPVLFLLEVQ
RGEVVEEDGGVRVEVSQAGCCSGYHRRSPTRRPDQLRRLLSARPHRLPRL
ILLIRGALPSTFPGLSLELELDGLQSCLELARVGEPSGPVLAEGAVV*
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mRNA from alignment at S-dermatodea_contig11944:1732..2347+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11944.1217.1 ID=mRNA_S-dermatodea_contig11944.1217.1|Name=mRNA_S-dermatodea_contig11944.1217.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=616bp|location=Sequence derived from alignment at S-dermatodea_contig11944:1732..2347+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCAGGTTTCCTCGAGCCGAGTGGCACAGCACGTCGAGCAGGAGCAGGC AAATGTGGATCGCGAGCGAGTCGTCCAGCGGCCCGATGTGCAGGAAGAGC TGCTCGAGGACGGCCTGCGCCGCCCCGTACTGTTTCTGCTGGAAGTGCAG CGCGGAGAGGTTGTAGAGGAGGACGGAGGTGTCCGCGTCGAGGTCAGCCA AGCCGGCTGCTGCAGCGGCTACCACCGCCGTAGCCCCACCCGAAGACCCG ACCAACTCCGCCGCCTGCTTAGTGCTCGCCCTCACCGCTTGCCCCGCCTC ATCCTCCTCATCCGAGGCGCCCTCCCCTCCACCTTCCCTGGACTTTCCCT TGAGCTGGAGCTGGATGGATTGCAGAGCTGCCTCGAGCTCGCTAGGGTCG GAGAACCCTCTGGCCCCGTGCTCGCAGAGGGCGCGGTTGTGTAGCGTCCG GAAATCGGTGCTGCTTCCCGAGGCGCTCGCGATGGTCAGATGCGAGAGCT GCGAGAGGGCTTCCTCGTACCTTCCCACCGTGTAGGATGCGTGGGCGCGC GCGGCCATGGCTGTGTTGGGTTGCGTCAGCGTAGTTGCGCTGCGTTGCCC TATTTCTCTCTCGCTG
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Coding sequence (CDS) from alignment at S-dermatodea_contig11944:1732..2347+

>mRNA_S-dermatodea_contig11944.1217.1 ID=mRNA_S-dermatodea_contig11944.1217.1|Name=mRNA_S-dermatodea_contig11944.1217.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=888bp|location=Sequence derived from alignment at S-dermatodea_contig11944:1732..2347+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCAGGTTTCCTCGAGCCGAGTGGCACAGCACGTCGAGCAGGAGCAGGC
AAATGTGGATCGCGAGCGAGTCGTCCAGCGGCCCGATGTGCAGGAAGAGC
TGCTCGAGGACGGCCTGCGCCGCCCCGTACTGTTTCTGCTGGAAGTGCAG
CGCGGAGAGGTTGTAGAGGAGGACGGAGGTGTCCGCGTCGAGGTCAGCCA
AGCCGGCTGCTGCAGCGGCTACCACCGCCGTAGCCCCACCCGAAGACCCG
ACCAACTCCGCCGCCTGCTTAGTGCTCGCCCTCACCGCTTGCCCCGCCTC
ATCCTCCTCATCCGAGGCGCCCTCCCCTCCACCTTCCCTGGACTTTCCCT
TGAGCTGGAGCTGGATGGATTGCAGAGCTGCCTCGAGCTCGCTAGGGTCG
GAGAACCCTCTGGCCCCGTGCTCGCAGAGGGCGCGGTTGTGTAGATGCAG
GTTTCCTCGAGCCGAGTGGCACAGCACGTCGAGCAGGAGCAGGCAAATGT
GGATCGCGAGCGAGTCGTCCAGCGGCCCGATGTGCAGGAAGAGCTGCTCG
AGGACGGCCTGCGCCGCCCCGTACTGTTTCTGCTGGAAGTGCAGCGCGGA
GAGGTTGTAGAGGAGGACGGAGGTGTCCGCGTCGAGGTCAGCCAAGCCGG
CTGCTGCAGCGGCTACCACCGCCGTAGCCCCACCCGAAGACCCGACCAAC
TCCGCCGCCTGCTTAGTGCTCGCCCTCACCGCTTGCCCCGCCTCATCCTC
CTCATCCGAGGCGCCCTCCCCTCCACCTTCCCTGGACTTTCCCTTGAGCT
GGAGCTGGATGGATTGCAGAGCTGCCTCGAGCTCGCTAGGGTCGGAGAAC
CCTCTGGCCCCGTGCTCGCAGAGGGCGCGGTTGTGTAG
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