mRNA_S-dermatodea_contig11931.1211.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11931.1211.1
Unique NamemRNA_S-dermatodea_contig11931.1211.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig11931.1211.1 vs. uniprot
Match: D8LPY1_ECTSI (Superoxide dismutase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPY1_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 4.180e-16
Identity = 37/56 (66.07%), Postives = 45/56 (80.36%), Query Frame = 1
Query:   49 ASLVVLGSEASAERLDVIDLPLGFMPEGITLGEGWTAYVGHRLDGSVWMGDLSTGE 216
            AS  ++ SEAS+ RLDVIDLP GF PEGIT GEGWTA+VG  L+G++W GDL TG+
Sbjct:   10 ASWAIIASEASS-RLDVIDLPTGFFPEGITNGEGWTAFVGSLLNGNIWKGDLETGQ 64          
BLAST of mRNA_S-dermatodea_contig11931.1211.1 vs. uniprot
Match: D7FZ69_ECTSI (Superoxide dismutase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ69_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 4.970e-15
Identity = 39/69 (56.52%), Postives = 50/69 (72.46%), Query Frame = 1
Query:   13 KSVMMLRLSA-IFASLVVLGSEASAERLDVIDLPLGFMPEGITLGEGWTAYVGHRLDGSVWMGDLSTGE 216
            + V  +R+S  + A+LV + S +S  RLDVIDLP GF PEGIT G GWTA+VG  +DG++W GDL TGE
Sbjct:   18 REVPSMRVSGGLLATLVTVTSASS--RLDVIDLPTGFSPEGITSGGGWTAFVGSLVDGNIWKGDLKTGE 84          
BLAST of mRNA_S-dermatodea_contig11931.1211.1 vs. uniprot
Match: A0A6H5JL04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL04_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 3.280e-14
Identity = 33/52 (63.46%), Postives = 39/52 (75.00%), Query Frame = 1
Query:   58 VVLGSEASAERLDVIDLPLGFMPEGITLGEGWTAYVGHRLDGSVWMGDLSTG 213
            V++ SE S  RLDVIDLP GF PEGIT GEGWTA+VG  +  ++W GDL TG
Sbjct:    7 VIIPSEGSL-RLDVIDLPTGFFPEGITNGEGWTAFVGSWMSRNIWKGDLETG 57          
BLAST of mRNA_S-dermatodea_contig11931.1211.1 vs. uniprot
Match: A0A6H5JLJ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLJ1_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 1.330e-10
Identity = 31/46 (67.39%), Postives = 35/46 (76.09%), Query Frame = 1
Query:   49 ASLVVLGSEASAERLDVIDLPLGFMPEGITLGEGWTAYVGHRLDGS 186
            AS  ++ SEAS+ RLDVIDLP GF PEGIT GEGWTA+VG  L  S
Sbjct:   10 ASWAIIASEASS-RLDVIDLPTGFFPEGITNGEGWTAFVGSLLSES 54          
BLAST of mRNA_S-dermatodea_contig11931.1211.1 vs. uniprot
Match: D7G508_ECTSI (Superoxide dismutase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G508_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 2.020e-10
Identity = 31/63 (49.21%), Postives = 40/63 (63.49%), Query Frame = 1
Query:   25 MLRLSAIFASLVVLGSEASAERLDVIDLPLGFMPEGITLGEGWTAYVGHRLDGSVWMGDLSTG 213
            M+RL ++ +  +V      A RLD+IDLP+GF PEG+TLG G   YV     GS+W GDL TG
Sbjct:    1 MIRLGSLLSLAIV--PAVLAGRLDLIDLPVGFQPEGVTLGHGQEVYVSAFTGGSIWKGDLETG 61          
BLAST of mRNA_S-dermatodea_contig11931.1211.1 vs. uniprot
Match: UPI001356B824 (superoxide dismutase n=1 Tax=Ornithinibacter aureus TaxID=622664 RepID=UPI001356B824)

HSP 1 Score: 59.7 bits (143), Expect = 8.580e-9
Identity = 31/61 (50.82%), Postives = 39/61 (63.93%), Query Frame = 1
Query:   34 LSAIFASLVVLGSEASAERLDVIDLPLGFMPEGITLGEGWTAYVGHRLDGSVWMGDLSTGE 216
            L+A FA +   GS ++A   D + LP G++PEGI  G G + Y G R DGSVW GDL TGE
Sbjct:   12 LAAAFA-VAPTGSASAAPFPDTLALPNGWLPEGIATGAGTSVYSGSRADGSVWKGDLRTGE 71          
BLAST of mRNA_S-dermatodea_contig11931.1211.1 vs. uniprot
Match: A0A7Y1XAG3_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7Y1XAG3_9ACTN)

HSP 1 Score: 58.2 bits (139), Expect = 3.240e-8
Identity = 32/72 (44.44%), Postives = 43/72 (59.72%), Query Frame = 1
Query:    7 RQKSVMMLRLSAIFASLV--VLGSEASAERLDVIDLPLGFMPEGITLGEGWTAYVGHRLDGSVWMGDLSTGE 216
            R+ +V ++ L  + A  +    G   SA+    IDLP GF PEGI +G+G T YVG   DGS++ GDL TGE
Sbjct:    2 RKTAVTLVALLCLVAVAMPAAAGGGKSAQFPSEIDLPDGFFPEGIAVGQGSTFYVGSLADGSIYKGDLRTGE 73          
BLAST of mRNA_S-dermatodea_contig11931.1211.1 vs. uniprot
Match: A0A1C4VPR7_9ACTN (Sugar lactone lactonase YvrE n=2 Tax=Micromonospora TaxID=1873 RepID=A0A1C4VPR7_9ACTN)

HSP 1 Score: 57.8 bits (138), Expect = 4.310e-8
Identity = 30/59 (50.85%), Postives = 38/59 (64.41%), Query Frame = 1
Query:   49 ASLVVLGSEASAERLDV----IDLPLGFMPEGITLGEGWTAYVGHRLDGSVWMGDLSTG 213
            A++  +GS A+A         I LP GF PEG+T+G+G T YVG  LDG+VW GDL TG
Sbjct:   16 ATVSTVGSSAAAHPSKPFPARIALPDGFTPEGLTIGDGTTVYVGSVLDGAVWRGDLRTG 74          
BLAST of mRNA_S-dermatodea_contig11931.1211.1 vs. uniprot
Match: A0A7Y3BVL3_9ACTN (WD40 repeat domain-containing protein (Fragment) n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7Y3BVL3_9ACTN)

HSP 1 Score: 55.8 bits (133), Expect = 4.960e-8
Identity = 26/41 (63.41%), Postives = 29/41 (70.73%), Query Frame = 1
Query:   94 DVIDLPLGFMPEGITLGEGWTAYVGHRLDGSVWMGDLSTGE 216
            D IDLP GF PEGI +G G T YVG   DG+V+ GDL TGE
Sbjct:   28 DEIDLPEGFFPEGIAVGRGSTFYVGSLADGTVYRGDLRTGE 68          
BLAST of mRNA_S-dermatodea_contig11931.1211.1 vs. uniprot
Match: UPI00195C913F (hypothetical protein n=1 Tax=Geodermatophilus bullaregiensis TaxID=1564160 RepID=UPI00195C913F)

HSP 1 Score: 57.4 bits (137), Expect = 5.910e-8
Identity = 31/74 (41.89%), Postives = 43/74 (58.11%), Query Frame = 1
Query:    7 RQKSVMMLRLSAIFASLVVLGSEASAERLD----VIDLPLGFMPEGITLGEGWTAYVGHRLDGSVWMGDLSTGE 216
            R+    +L   A+  ++V+  + A A  +D    VI LP GF PEGI+ G G   YVG R DGS++ GDL TG+
Sbjct:    2 RRTMTSLLAAGALAGAVVLPATSAGAAPVDPFPEVIALPDGFSPEGISTGRGTAFYVGSRTDGSIYRGDLRTGD 75          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11931.1211.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LPY1_ECTSI4.180e-1666.07Superoxide dismutase n=1 Tax=Ectocarpus siliculosu... [more]
D7FZ69_ECTSI4.970e-1556.52Superoxide dismutase n=1 Tax=Ectocarpus siliculosu... [more]
A0A6H5JL04_9PHAE3.280e-1463.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JLJ1_9PHAE1.330e-1067.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G508_ECTSI2.020e-1049.21Superoxide dismutase n=1 Tax=Ectocarpus siliculosu... [more]
UPI001356B8248.580e-950.82superoxide dismutase n=1 Tax=Ornithinibacter aureu... [more]
A0A7Y1XAG3_9ACTN3.240e-844.44Uncharacterized protein n=1 Tax=Acidimicrobiia bac... [more]
A0A1C4VPR7_9ACTN4.310e-850.85Sugar lactone lactonase YvrE n=2 Tax=Micromonospor... [more]
A0A7Y3BVL3_9ACTN4.960e-863.41WD40 repeat domain-containing protein (Fragment) n... [more]
UPI00195C913F5.910e-841.89hypothetical protein n=1 Tax=Geodermatophilus bull... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11931contigS-dermatodea_contig11931:4170..4837 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score78.6
Seed ortholog evalue1.2e-12
Seed eggNOG ortholog2880.D8LPY1
EggNOG OGs2D5U8@1,2SZPX@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons2
Model size217
Cds size195
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11931.1211.1prot_S-dermatodea_contig11931.1211.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11931 4191..4837 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924223.868787-UTR-S-dermatodea_contig11931:4169..41901622924223.868787-UTR-S-dermatodea_contig11931:4169..4190Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11931 4170..4190 +
1694079106.0460913-UTR-S-dermatodea_contig11931:4169..41901694079106.0460913-UTR-S-dermatodea_contig11931:4169..4190Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11931 4170..4190 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924223.8769417-CDS-S-dermatodea_contig11931:4190..43471622924223.8769417-CDS-S-dermatodea_contig11931:4190..4347Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11931 4191..4347 +
1694079106.0588322-CDS-S-dermatodea_contig11931:4190..43471694079106.0588322-CDS-S-dermatodea_contig11931:4190..4347Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11931 4191..4347 +
1622924223.8847742-CDS-S-dermatodea_contig11931:4799..48371622924223.8847742-CDS-S-dermatodea_contig11931:4799..4837Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11931 4800..4837 +
1694079106.0665748-CDS-S-dermatodea_contig11931:4799..48371694079106.0665748-CDS-S-dermatodea_contig11931:4799..4837Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11931 4800..4837 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11931.1211.1

>prot_S-dermatodea_contig11931.1211.1 ID=prot_S-dermatodea_contig11931.1211.1|Name=mRNA_S-dermatodea_contig11931.1211.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=65bp
MMLRLSAIFASLVVLGSEASAERLDVIDLPLGFMPEGITLGEGWTAYVGH
RLDGSVWMGDLSTGE
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mRNA from alignment at S-dermatodea_contig11931:4170..4837+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11931.1211.1 ID=mRNA_S-dermatodea_contig11931.1211.1|Name=mRNA_S-dermatodea_contig11931.1211.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=668bp|location=Sequence derived from alignment at S-dermatodea_contig11931:4170..4837+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGCGAACGGCAAAAGTCAGTCATGATGCTGCGTCTATCGGCTATATTTGC GTCATTGGTGGTGCTGGGATCTGAAGCTTCCGCGGAGAGGCTGGATGTGA TCGACCTGCCGTTGGGCTTCATGCCCGAAGGAATCACTCTTGGAGAGGGG TGGACTGCTTACGTCGGGCACCGCCTCGGTGAGTGAAAAAGATGCGGGAT CCGGCCAAGTATTTTGGCTGCCGCAGGTCTGTGCGGACAAGTCGTTGTCC CTGGCCTTAACCTGGTAGTTCGTGGCGCGAACGCTTTGCGCAAAATTACC AGCCTGACGCCGTGCGCAACGCCTATCCGGTGCGATATTTCCTCGACAAG ATGCATTCGATAGTGGCTGCATTAACGGCAGTACTATTGCTTGCCTCTCG TTCAAGCCCCTTTCACGTTGTTAGGTAATTTCCCTACATACACTCATAAT GTATTCCGTGCAGACTGATCGCTACAGTGCACTATGCAATCCCTCGCTGT TTCCACTCCCGAGATACGGACCCTTCTTTCGCGTCGTTGTGCGCCCTGTC CTACAACCGAAGTGTAGCACAATCACATGCTGAGTACTGTAATCCCTGCA ATTGTTTCCATTCTGCCCTGATGGACGCAGATGGCTCCGTCTGGATGGGG GATCTCAGCACCGGCGAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig11931:4170..4837+

>mRNA_S-dermatodea_contig11931.1211.1 ID=mRNA_S-dermatodea_contig11931.1211.1|Name=mRNA_S-dermatodea_contig11931.1211.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=390bp|location=Sequence derived from alignment at S-dermatodea_contig11931:4170..4837+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGATGCTGCGTCTATCGGCTATATTTGCGTCATTGGTGGTGCTGGGATC
TGAAGCTTCCGCGGAGAGGCTGGATGTGATCGACCTGCCGTTGGGCTTCA
TGCCCGAAGGAATCACTCTTGGAGAGGGGTGGACTGCTTACGTCGGGCAC
CGCCTCGATGATGCTGCGTCTATCGGCTATATTTGCGTCATTGGTGGTGC
TGGGATCTGAAGCTTCCGCGGAGAGGCTGGATGTGATCGACCTGCCGTTG
GGCTTCATGCCCGAAGGAATCACTCTTGGAGAGGGGTGGACTGCTTACGT
CGGGCACCGCCTCGATGGCTCCGTCTGGATGGGGGATCTCAGCACCGGCG
AAATGGCTCCGTCTGGATGGGGGATCTCAGCACCGGCGAA
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