mRNA_S-dermatodea_contig11931.1211.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig11931.1211.1 vs. uniprot
Match: D8LPY1_ECTSI (Superoxide dismutase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPY1_ECTSI) HSP 1 Score: 79.7 bits (195), Expect = 4.180e-16 Identity = 37/56 (66.07%), Postives = 45/56 (80.36%), Query Frame = 1
Query: 49 ASLVVLGSEASAERLDVIDLPLGFMPEGITLGEGWTAYVGHRLDGSVWMGDLSTGE 216
AS ++ SEAS+ RLDVIDLP GF PEGIT GEGWTA+VG L+G++W GDL TG+
Sbjct: 10 ASWAIIASEASS-RLDVIDLPTGFFPEGITNGEGWTAFVGSLLNGNIWKGDLETGQ 64
BLAST of mRNA_S-dermatodea_contig11931.1211.1 vs. uniprot
Match: D7FZ69_ECTSI (Superoxide dismutase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ69_ECTSI) HSP 1 Score: 77.0 bits (188), Expect = 4.970e-15 Identity = 39/69 (56.52%), Postives = 50/69 (72.46%), Query Frame = 1
Query: 13 KSVMMLRLSA-IFASLVVLGSEASAERLDVIDLPLGFMPEGITLGEGWTAYVGHRLDGSVWMGDLSTGE 216
+ V +R+S + A+LV + S +S RLDVIDLP GF PEGIT G GWTA+VG +DG++W GDL TGE
Sbjct: 18 REVPSMRVSGGLLATLVTVTSASS--RLDVIDLPTGFSPEGITSGGGWTAFVGSLVDGNIWKGDLKTGE 84
BLAST of mRNA_S-dermatodea_contig11931.1211.1 vs. uniprot
Match: A0A6H5JL04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL04_9PHAE) HSP 1 Score: 70.5 bits (171), Expect = 3.280e-14 Identity = 33/52 (63.46%), Postives = 39/52 (75.00%), Query Frame = 1
Query: 58 VVLGSEASAERLDVIDLPLGFMPEGITLGEGWTAYVGHRLDGSVWMGDLSTG 213
V++ SE S RLDVIDLP GF PEGIT GEGWTA+VG + ++W GDL TG
Sbjct: 7 VIIPSEGSL-RLDVIDLPTGFFPEGITNGEGWTAFVGSWMSRNIWKGDLETG 57
BLAST of mRNA_S-dermatodea_contig11931.1211.1 vs. uniprot
Match: A0A6H5JLJ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLJ1_9PHAE) HSP 1 Score: 60.8 bits (146), Expect = 1.330e-10 Identity = 31/46 (67.39%), Postives = 35/46 (76.09%), Query Frame = 1
Query: 49 ASLVVLGSEASAERLDVIDLPLGFMPEGITLGEGWTAYVGHRLDGS 186
AS ++ SEAS+ RLDVIDLP GF PEGIT GEGWTA+VG L S
Sbjct: 10 ASWAIIASEASS-RLDVIDLPTGFFPEGITNGEGWTAFVGSLLSES 54
BLAST of mRNA_S-dermatodea_contig11931.1211.1 vs. uniprot
Match: D7G508_ECTSI (Superoxide dismutase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G508_ECTSI) HSP 1 Score: 64.3 bits (155), Expect = 2.020e-10 Identity = 31/63 (49.21%), Postives = 40/63 (63.49%), Query Frame = 1
Query: 25 MLRLSAIFASLVVLGSEASAERLDVIDLPLGFMPEGITLGEGWTAYVGHRLDGSVWMGDLSTG 213
M+RL ++ + +V A RLD+IDLP+GF PEG+TLG G YV GS+W GDL TG
Sbjct: 1 MIRLGSLLSLAIV--PAVLAGRLDLIDLPVGFQPEGVTLGHGQEVYVSAFTGGSIWKGDLETG 61
BLAST of mRNA_S-dermatodea_contig11931.1211.1 vs. uniprot
Match: UPI001356B824 (superoxide dismutase n=1 Tax=Ornithinibacter aureus TaxID=622664 RepID=UPI001356B824) HSP 1 Score: 59.7 bits (143), Expect = 8.580e-9 Identity = 31/61 (50.82%), Postives = 39/61 (63.93%), Query Frame = 1
Query: 34 LSAIFASLVVLGSEASAERLDVIDLPLGFMPEGITLGEGWTAYVGHRLDGSVWMGDLSTGE 216
L+A FA + GS ++A D + LP G++PEGI G G + Y G R DGSVW GDL TGE
Sbjct: 12 LAAAFA-VAPTGSASAAPFPDTLALPNGWLPEGIATGAGTSVYSGSRADGSVWKGDLRTGE 71
BLAST of mRNA_S-dermatodea_contig11931.1211.1 vs. uniprot
Match: A0A7Y1XAG3_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7Y1XAG3_9ACTN) HSP 1 Score: 58.2 bits (139), Expect = 3.240e-8 Identity = 32/72 (44.44%), Postives = 43/72 (59.72%), Query Frame = 1
Query: 7 RQKSVMMLRLSAIFASLV--VLGSEASAERLDVIDLPLGFMPEGITLGEGWTAYVGHRLDGSVWMGDLSTGE 216
R+ +V ++ L + A + G SA+ IDLP GF PEGI +G+G T YVG DGS++ GDL TGE
Sbjct: 2 RKTAVTLVALLCLVAVAMPAAAGGGKSAQFPSEIDLPDGFFPEGIAVGQGSTFYVGSLADGSIYKGDLRTGE 73
BLAST of mRNA_S-dermatodea_contig11931.1211.1 vs. uniprot
Match: A0A1C4VPR7_9ACTN (Sugar lactone lactonase YvrE n=2 Tax=Micromonospora TaxID=1873 RepID=A0A1C4VPR7_9ACTN) HSP 1 Score: 57.8 bits (138), Expect = 4.310e-8 Identity = 30/59 (50.85%), Postives = 38/59 (64.41%), Query Frame = 1
Query: 49 ASLVVLGSEASAERLDV----IDLPLGFMPEGITLGEGWTAYVGHRLDGSVWMGDLSTG 213
A++ +GS A+A I LP GF PEG+T+G+G T YVG LDG+VW GDL TG
Sbjct: 16 ATVSTVGSSAAAHPSKPFPARIALPDGFTPEGLTIGDGTTVYVGSVLDGAVWRGDLRTG 74
BLAST of mRNA_S-dermatodea_contig11931.1211.1 vs. uniprot
Match: A0A7Y3BVL3_9ACTN (WD40 repeat domain-containing protein (Fragment) n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7Y3BVL3_9ACTN) HSP 1 Score: 55.8 bits (133), Expect = 4.960e-8 Identity = 26/41 (63.41%), Postives = 29/41 (70.73%), Query Frame = 1
Query: 94 DVIDLPLGFMPEGITLGEGWTAYVGHRLDGSVWMGDLSTGE 216
D IDLP GF PEGI +G G T YVG DG+V+ GDL TGE
Sbjct: 28 DEIDLPEGFFPEGIAVGRGSTFYVGSLADGTVYRGDLRTGE 68
BLAST of mRNA_S-dermatodea_contig11931.1211.1 vs. uniprot
Match: UPI00195C913F (hypothetical protein n=1 Tax=Geodermatophilus bullaregiensis TaxID=1564160 RepID=UPI00195C913F) HSP 1 Score: 57.4 bits (137), Expect = 5.910e-8 Identity = 31/74 (41.89%), Postives = 43/74 (58.11%), Query Frame = 1
Query: 7 RQKSVMMLRLSAIFASLVVLGSEASAERLD----VIDLPLGFMPEGITLGEGWTAYVGHRLDGSVWMGDLSTGE 216
R+ +L A+ ++V+ + A A +D VI LP GF PEGI+ G G YVG R DGS++ GDL TG+
Sbjct: 2 RRTMTSLLAAGALAGAVVLPATSAGAAPVDPFPEVIALPDGFSPEGISTGRGTAFYVGSRTDGSIYRGDLRTGD 75 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11931.1211.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig11931.1211.1 >prot_S-dermatodea_contig11931.1211.1 ID=prot_S-dermatodea_contig11931.1211.1|Name=mRNA_S-dermatodea_contig11931.1211.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=65bp MMLRLSAIFASLVVLGSEASAERLDVIDLPLGFMPEGITLGEGWTAYVGHback to top mRNA from alignment at S-dermatodea_contig11931:4170..4837+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig11931.1211.1 ID=mRNA_S-dermatodea_contig11931.1211.1|Name=mRNA_S-dermatodea_contig11931.1211.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=668bp|location=Sequence derived from alignment at S-dermatodea_contig11931:4170..4837+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig11931:4170..4837+ >mRNA_S-dermatodea_contig11931.1211.1 ID=mRNA_S-dermatodea_contig11931.1211.1|Name=mRNA_S-dermatodea_contig11931.1211.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=390bp|location=Sequence derived from alignment at S-dermatodea_contig11931:4170..4837+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |