mRNA_S-dermatodea_contig1193.1210.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1193.1210.1
Unique NamemRNA_S-dermatodea_contig1193.1210.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1193.1210.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1193contigS-dermatodea_contig1193:6508..13595 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score61.6
Seed ortholog evalue2.1e-07
Seed eggNOG ortholog2880.D7G982
Preferred nameNPR2
KEGG rclassRC00002
KEGG koko:K17686,ko:K20405
KEGG TC3.A.3.5
KEGG ReactionR00086
KEGG Pathwayko01524,ko04016,ko04150,map01524,map04016,map04150
GOsGO:0000306,GO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0006810,GO:0006811,GO:0006812,GO:0006820,GO:0006865,GO:0006950,GO:0006995,GO:0007154,GO:0008150,GO:0009267,GO:0009605,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009968,GO:0009987,GO:0009991,GO:0010506,GO:0010508,GO:0010646,GO:0010647,GO:0010648,GO:0015711,GO:0015804,GO:0015824,GO:0015840,GO:0015849,GO:0016020,GO:0016241,GO:0019222,GO:0019755,GO:0019898,GO:0023051,GO:0023057,GO:0031090,GO:0031312,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031667,GO:0031668,GO:0031669,GO:0032006,GO:0032007,GO:0032101,GO:0032103,GO:0032104,GO:0032106,GO:0032107,GO:0032109,GO:0032879,GO:0032890,GO:0032991,GO:0033043,GO:0033554,GO:0034198,GO:0035859,GO:0042221,GO:0042493,GO:0042594,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043269,GO:0043562,GO:0044070,GO:0044087,GO:0044088,GO:0044422,GO:0044424,GO:0044425,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0046942,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0050789,GO:0050794,GO:0050896,GO:0051049,GO:0051128,GO:0051179,GO:0051234,GO:0051716,GO:0051952,GO:0051955,GO:0065007,GO:0070881,GO:0071496,GO:0071702,GO:0071705,GO:0080134,GO:0080135,GO:0097042,GO:0098588,GO:0098805,GO:0098852,GO:1902115,GO:1902531,GO:1902532,GO:1903432,GO:1903832,GO:1903833,GO:1904262,GO:1990130,GO:1990928,GO:2000785
EggNOG free text desc.regulation of autophagosome assembly
EggNOG OGsKOG3789@1,KOG3789@2759
EC3.6.3.54
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size266
Cds size264
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924223.8237789-CDS-S-dermatodea_contig1193:6507..66421622924223.8237789-CDS-S-dermatodea_contig1193:6507..6642Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1193 6508..6642 +
1694079106.0248742-CDS-S-dermatodea_contig1193:6507..66421694079106.0248742-CDS-S-dermatodea_contig1193:6507..6642Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1193 6508..6642 +
1622924223.8355486-CDS-S-dermatodea_contig1193:13465..135941622924223.8355486-CDS-S-dermatodea_contig1193:13465..13594Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1193 13466..13594 +
1694079106.0364153-CDS-S-dermatodea_contig1193:13465..135941694079106.0364153-CDS-S-dermatodea_contig1193:13465..13594Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1193 13466..13594 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1193.1210.1prot_S-dermatodea_contig1193.1210.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1193 6508..13594 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1193.1210.1

>prot_S-dermatodea_contig1193.1210.1 ID=prot_S-dermatodea_contig1193.1210.1|Name=mRNA_S-dermatodea_contig1193.1210.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=88bp
PHLPKILKRVYKGLKAAGEVMMEMPGYPSLKLSLRVFAPRTPIQHWRQIY
DHDVPVRHCAGLAEGVDELSSPAPGWHSETSFELTLMQ
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mRNA from alignment at S-dermatodea_contig1193:6508..13595+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1193.1210.1 ID=mRNA_S-dermatodea_contig1193.1210.1|Name=mRNA_S-dermatodea_contig1193.1210.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=7088bp|location=Sequence derived from alignment at S-dermatodea_contig1193:6508..13595+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCCCATCTGCCCAAGATTCTCAAGAGAGTGTACAAGGGTCTCAAGGCCGC
GGGGGAGGTGATGATGGAAATGCCGGGATACCCGAGCCTTAAGCTATCTC
TGCGGGTCTTCGCGCCGCGAACTCCGATCCAGCACGTGAGTTTAATGGCC
GTATTCATTTATTCGTTAACATTCGTTTTTTCCACGTATTTTAACTTATG
TATTAGGATGTAGAATACAGTCTTGTGGCTTCTTGGATTGAACATTTGCG
TGGCGGGTTTTGTATTTGTTCCTGCTGTTTTTTTATGGGCCATACTGTAC
AGCCACACTTTCCTCTCCAGACAAATTGGTTTGGAAAAAAATAAAAATAA
AACACTCTTTTTCTTCTTCCAGTGAGGCTATCTGGAAGCCAAAAATATAT
GTTTGGACACTTTTCTCTCAAGTTTTCTTCCCATAAAATGACAGAAAGAA
TAATTATCAGAGAAAAGTGCCCAAATATCAATGTGTTATGTTTATTTTAT
CCTCCATAATAATTTTTTCTCCTTGACTCTTTGCGTGTCTGACCACAAGT
CGGGTCGGATTAAGCCGATCGGCTATACGTGTGCAAATCAATCAAATCAA
TCAATCAACAACTAGTATATTGAACATACCCAAATATGGTGTTTTCAACA
CACCACCAATGGCCTTGAGCGTCTCGCGAAGTTTCCGGTGGGAATGTGGG
TTTTGGGTGTTTGTTAAGAATTTGAATTATTTCTGGTGATACCGATGCAT
CATTAATTGGGAATCATCGCTGTGAGGACCGCGCCTGCATTCCTTCAGCC
ACCTTTGTGCAGCAAATGGTGGTGTTGGGGCCAACACTGTACCCGCTGGG
AGAGACAACACAGCAGGGTGGAATGCATCCATACAGCCACAGTTAGGGGT
CGGAATGGAGGGCTAATGGAGCCAGTTTTAGCCCATTTATGTCAGCTCAG
AAAAAAAAACACTGTTGGTACTGGCCAACCACCACAGCACAAGGCTGACG
TATCGCATGAAATTGTTAAACTTTCAAACCTTTTTTTAAAATGAAATTTG
ACTCTTGTTATTACAGTCGCAGGGTATCGCAGCACGGACAACTTTGCGCG
GCAACCTGTTGAAAAATCTAACCGATGCGCGGCTCTCATAGCGCTGGCTG
GCGCAACGCACGGTCTCTCTAGCACTCCACGGCCGTGATGCTGCCTCTCT
CGATGACGGTGGCGTGCGCAGCCCGCATTCATACCTACCTCTGCCTTGGT
CGTGCTTTGCCTGCATACTATATGAAATAACTTACAAACTATATATAATA
ACTTACAAACGTCTTTTTGAGATCTTTCTGAACTTAGGAATCTTGCTCTT
GGTTCCACGCGGTACGTTGCTTGCTGTCTTTTTTGTGTATTTTGTGGGTT
GTGGTGGCGTTGCATGCGTACGTGGTGTGGGCGTTTGCTGTTCTTCATTT
TTCCTCCGATTGAAAGCGGTGTGACTTGGAATAGTTCGGGAGGTGCGAAG
CCAGTGAGGAGGGCAGCTCCCTGCGAATCAACGCGGGTATCACTACTGCT
AGCGCTGCTGTCCGGCGGGCCTCTCAATCGGTGCCAGTACAAGGAATATT
CTATCCTGTACGGTTGTTGTTGATGATAAAACAAAAACTGCATCACGCAA
GTAGTACAAGTCATTGTGTCGAGAAAGTTGAAGCACCCCCTTTGGGGTTA
TAATAATTGGGGTTCATCAGCATCGGTTCCACAAGGCTCCACGAAGCACT
ACGGCGTGGGCACGTACTACAAGTACACGTCTAGACACGCTGCCGTCGAA
GAATGATCCCCGCAATATCCCTGTATCCCTGAGTGGAGGTGTGCTGTGTG
CTGTACCCGAGGCTATGTATTTCGCGTGAATTTTGTTTTCTACCCGCGTG
GATGACCGCGCGCATTTGTTTTCATTTGCAGAACCTTCTTATTTGTTTAG
GTTGTTTTTCGTCCCACATGACGTTCAATGCCTGCTTTACTGCGTAGCTC
GATCCCCCCCCGCGGCTGGCGAGACGAAACTAGATGCGTTGAGTTCATCT
ACTGCTGTAAATAAGTACGCAGCCCAGCTCGTCCTGAGTGCTCCGTGTCA
ATATATATCTACTTTCACGAAGAGGTTTTATTACTGGATACATGTATAAA
ATATCCACACCGCGGATAACAGTACATTTCTGACGACACTCTAGTGTTAT
GCAAGACATCACGTCGTAGGAAAAAGTGTGATCTCGCAGTGTCAAGCACG
ATTTTGTTTTTGTCAAAAACAGGCTGCATTTGTGACGCATGCAGCCTGTA
ACGGCACGACACTACTATGGCACTGTTGTGTAACCATCATAGCGAAAAAA
TGCACCTTACTTCCGCACTGATGTGAACCAGTCACAAATTGTAATGACAC
TTTCACACTGTGTTTCGAACCATTCTCGAATTGGCATATAATTTTCACAC
TATGTCGTGAACCAGCCACGACTTGGAAAGACACTTTCACACTATGTCGT
GAAGCAGATTCACTTTGTAATAACACTGCACTGTAACCTTAACACAACAC
TATCAGTAGTATACGTGAGCACGCTTTGGACACAGCACTGTCGTTGTTAT
CCCTTTGAAACATAACACCACTCTCGAAGCGTGGCAAGATCTATATAAAA
ATATTATATTCTCGAAGCGTGCAAGATCTATATAAACATAAAAAATATAA
ACACCTCGAGCGAGCACGCGCGCCTCGCCACCCCCACCACACACCGCAAC
GACGCGAACACAAAATACACACGTTCACATGGTGGACACCGATAGCGCAT
TCCCAATTGAGATCAACGACGCCCCGGCGAGTGGGAGTGCGGGCGCGGTT
GCAGTTGCGGGTGCGGGTGCGGTTGCGGGTGCTGGTGCCTGTGCTGTTGC
TCAAGCTTTCGTGCAGGCGCCTTCAGCTTCCCATTCCGTCCCATCCCCGA
GGACGTGCCCGCGCTCGACGAGGTTAAGGCCGAGCAGGCTATCCCCAAGC
GCCTGAAGGACCCCGCTTGCGGGAGGAGCTCAGGGCCATGTATGTATGTA
GTCGAGGAGGGAGAGGAAGAAGAGGACGCGGTTGTCGCGGAGGTGGAAGC
CGGCTTGGAAGAGACCTAGACAACAGACGGCCAACAGCAGCCATGAGTGA
TGTGTTTTGTTATTGTTGTCCTCTGAGTTGGGATGCAGGGATATGGCAGG
GCGGCTGGGGGGCGGGGGTATGGGTAGACGCCGCATCGCATAGCAGCAAC
GTTATCAGTAGCATGAGCTGTAGCATATGCACTCCATAGAGTGTAGAGTG
TATTGTTATCCGAGCTATGGAACTCGTACAGTACCACTATCGCACTCCGC
CGTGTATTCGAGCTGTGGGTGGGACTATATAAGACCGTGGGTGTCGATTG
GTCGAACATTTCGGACTACACTCCACACTGTGTAGCGGCATAATCTGACA
TGTCAGGCTAGACCTTTTGAAAATCGATACTATCGTGTATCTGGCTAAAC
AATGTATTCACAAACTGCCAATCGACACCTGCTTCCGGCAACAACAGCTT
CATAATATTCCTATCGATACCTATTGGAAGCAGCTATAGGTTACCTATTG
GAATAGGGTCCTTATGATACCCTGCTTGCCTATACCCTATTATCCAGGGT
GTGAGTACACACACGCGGTGGTCGAGAGTGAAAACAAAATATCGAGATGC
TGTGCAGATTACACATCATCACACGACACACCACACACAACAGCAGGACA
GAGCTCGGATATCGTAGGATTCCTAAATACTGCGTTATCCGAGCCCTCAG
GATCGAACAAACAACTTGCGAAATTTCGTTTCTAGGCGGAAAGAGCCTAC
TCAACTCTAGCTTCGAGTAAGTTTTATCTTATTTCAAATTGCCACAGCAC
GAAGGCCTGACAGCGCAGTATACCCGAATACTGCGTTTTCGGAAACCCCG
AGGCTCGATATATAGTATATATAGGTTCTCGTATTATGTCATGAGGCCGA
ATGTTGTGGAAATCATAGCTCCGATTTGCAATGCACTCTACTCATGCCTG
CTCAGACGAATACCAAAAATATTGGACCCCAATGCTCGCTCTGTATTAAT
ACTCCGAAGTATATTTTTGTTGTTTCAGGGGATTTTGACCGCTGCTGCCA
AAAATGGATGCACGGTCTACGTGAGCGGAGATGCAAGAGCCGGGCTATGA
TATCCGTACGTTGGGAATTACAATTTATTTATTCATGTCAACAAGTCTGG
AACTACTCTAGTGATATAGCGGCCCTCTTATTCCCCAAAATCTTTGGATG
TGGAAGTTTTTTTAGAGGCCCCGGCCGAATCACTTGGGACCACACACTTC
GGTGTCTGGAGTGTGCCACGACAACGATTTTTAGACGGATAAACATATAG
GCACACCCGAAGACTGATGGCCGAAGGGTGTGATGACCCAGGCTGGGAAT
GAAACACATGTGAGTGTGGGCCGAGATCTGAATCGAGCACCTCAGAGGTG
GTAGACTTAGTAGTACAGGGCAAATTTTTCAATATCACATACTGGTAAAC
ATATGAGTGGCAGTCCCGAGACCGAATCACCACGACGAGGATACCGGGAT
ATCTGGCCATCGGAAGACTTTACCCTATCCAATCGGCAGCCATCTTCAAT
GTAATGTATAGGACTGCTGCTGCAAGTTGTGCGCGACCCCATAGCATCAA
ATATAACATAGGCGCTCACTGAGTGAGCTTGGGCCATCTTTTTGTCTACC
AAAAAGATTGGGCCCCAATGCTCGTTTTTTGTTTTTTGTTTTTAAATATT
TTATGATTTCAGGGGGGGGTGCTTATGAGCTCAATTCCCTCCATGGAAGC
CCCTCAGGCGTTCGCGGTGTCTTTCTTATATACGTACAGCAGGATGCATT
CCTCCAAGACCGGTTAAGTCATCTCATACAGTGTACATGCAAGCGCTTGA
AGAACTGGCAAAGTGTCCCTCTGAAGGCCGACGATGCGTCATGACGGGAT
TGGGTTGCGATCGCCGCCGTGGCTGGGACATCGCGCACTGATTTAGTGTG
GATGGAAAAACTGCAGTAAGAGGCCAACATATGTGGGGGGGGGCTACCTA
TCTTCCAAATCAGCAATCGCGAGACCCCTTGAACCCTAACCCCAACTCCA
AGGCCCGAGTACCGGTGTTGCTTGCGAGGGTGGGTACAAGTGTGCGTTCA
AGAGTAGGCAGAGAGCTGCTCAACATCTAGAAGAACCAAATCTTCTGTAA
ATCATGTACTTCGAAGTATAATAGTATCCAACTCTATTTCGCATATTTTA
GCTTGGGAGGTGTCCTTACGGTTGGCGAAGGTGACTGCGTAGTGTTGTTG
TTGTTGTTGTTCTTGCTGTGTTTCCTCCGGGCTACCCTTTTACCGCTCGC
ACTCGAGATTCACGGTTGCCAGAGTTGTTTAGGATACTTTAGGTGTGATG
AGCCCTTCCTGTCGGAGAGGAGGCTGTTTTATTTTGATTCTACAGTAGCA
GGCCCAAGTAATCTGTGTTGAGATTTGTGTTATGACGAGAAATAACAACC
AGCAAACAATACAGCGGCTGGAAACTCATATATTCCTGTGAGAAAAACGC
CTTTACCTGCTGTGCGCGACACAAACCCATGGTCAGTAAATGCTCAAGAC
GGACTCTAGTACATGATACCGCTACCTACACGATGAGGCGATTGGTTCGG
CCAACCTTTGGCCGAGAATTTTGAAAAAAACGACTTCTAGGGGAAAACTC
AAAAATTATTGACATAGACGGATGCGCCTAAACTACTGCAGTTGTAACGG
CTGGTTCGTGTCGAAAAGCCTCTTTTGTTTGGCTTTGGTGCCTCACGATG
CAACCACGAACATCTTTCCAGACACGCACGCCCGAGCGCCCGCACTTTAA
TCGAAGCACAAGAAGAGTATGTAGGCCCCATCTGGCCATGTACATTTCGC
CCGTGTACTCTGGGTGGGCCAAAACAAATTTCTCAAAGTTGTGTGGTCTA
TCCCGGGGATGCTTACAGCTGCAGCCCCAGATCCTGGAAAGCAGGAGACC
TCTTCTCTGACCCTTCAGATACACGATTCTCGCTGGACAGTCAGCGTCGC
TTCGTACTGCTGCGGCGCCGAGGGGGGTTGTTTCTGAGACTGGGGGTGAT
TTTTTCGCACGAAAACACCTCTGTTCGATGTCACGTCTGCCGCGAATACT
CCGGCTTTGATCCGAATAAGCGTAAAAATTGCGCAGCAGCCTCGACCATG
ACCTTAGCTTTCGGGGAATATCTAATGTGTCGGCCCTGATCCTCTCAAAA
AGAAAAACCACGAAGTGGGGGCCCTGACTAATGCCAGCGGCCACGCCGTA
AACCTTTTTCCGGCGGAAAATAAGCCGGAAGTTTTTGCTTGCTTTGCAAA
CCATAATAGGGGCTTTGTATATATCGTCATACGACCAATGTCAACAGCCG
TGCAATTTCCGAGGTATGCCGCCTCTGATTCCGAGCGTTTGTGTTTATTC
GTATGTACTCTATAGGTAATTCCGTTCGTTGTTTTTTCGATTCATCGAAT
TTTCATTGGACCACGAGCGGGGTCGGCCACCATTGGCGGGTCGGCCGGTT
ATAAGTGTGGTAAGCAGTCAATCAAACACCAGATAATGCATTCTCATACT
TGTATGTGTGTTTTGTTTTGCTTTTTCCCTTTTTCATCGCAGTGGCGGCA
ACCAAACGTTTTTTTTTTTTCGTAGTGGCGGCAAGAAAACAAAAAATTAT
AAACACACCCAGGACGTCAGCCAAAAGTGTTTTGGCGGCCTGTTCGGCTT
TTCGACGAAATCCCGATCAGTCACATTAACCCGCAAGGAACTAACCTCCC
CGTAAATCAGATGAACCGACGAGGCTTCCCGACCAATCGGATGATGTAAT
GAGGAACTCCCAACCAACCTCTGTTCCGTTCCGTTCTGTTTTATTTCTTC
TGGTCCAGTGGCGACAAATTTATGACCACGACGTCCCTGTCCGCCACTGC
GCGGGATTGGCGGAGGGGGTGGACGAGCTAAGCAGCCCCGCTCCGGGTTG
GCACTCAGAGACTTCGTTCGAGCTCACCCTTATGCAGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig1193:6508..13595+

>mRNA_S-dermatodea_contig1193.1210.1 ID=mRNA_S-dermatodea_contig1193.1210.1|Name=mRNA_S-dermatodea_contig1193.1210.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=528bp|location=Sequence derived from alignment at S-dermatodea_contig1193:6508..13595+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCCCATCTGCCCAAGATTCTCAAGAGAGTGTACAAGGGTCTCAAGGCCGC
GGGGGAGGTGATGATGGAAATGCCGGGATACCCGAGCCTTAAGCTATCTC
TGCGGGTCTTCGCGCCGCGAACTCCGATCCAGCACCCCCATCTGCCCAAG
ATTCTCAAGAGAGTGTACAAGGGTCTCAAGGCCGCGGGGGAGGTGATGAT
GGAAATGCCGGGATACCCGAGCCTTAAGCTATCTCTGCGGGTCTTCGCGC
CGCGAACTCCGATCCAGCACTGGCGACAAATTTATGACCACGACGTCCCT
GTCCGCCACTGCGCGGGATTGGCGGAGGGGGTGGACGAGCTAAGCAGCCC
CGCTCCGGGTTGGCACTCAGAGACTTCGTTCGAGCTCACCCTTATGCAGT
GGCGACAAATTTATGACCACGACGTCCCTGTCCGCCACTGCGCGGGATTG
GCGGAGGGGGTGGACGAGCTAAGCAGCCCCGCTCCGGGTTGGCACTCAGA
GACTTCGTTCGAGCTCACCCTTATGCAG
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