mRNA_S-dermatodea_contig11928.1208.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11928.1208.1
Unique NamemRNA_S-dermatodea_contig11928.1208.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig11928.1208.1 vs. uniprot
Match: D8LFE0_ECTSI (DNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFE0_ECTSI)

HSP 1 Score: 388 bits (997), Expect = 2.140e-125
Identity = 189/220 (85.91%), Postives = 209/220 (95.00%), Query Frame = 1 
Query:   13 RYDGVRAQVHLMEDGSLRFFSRSSKDNSSELPDLVPVMKDCAAEGVKSYVIDTEVVAYDRDTGNLLPFQMLSTRGRKDVNADEVKVKVIVEAFDIIYLNGKPLLQRPLQERRKALRSSFKEVEGRFRFATFMDHKEDGDTGPIEEFLSEAVKGNCEGLMVKTLTENASYEPSKRSLNWLKLKKDYLQADGGGVGDSLDLVPIGAFFGKGKRTGATFSYLI 672
            +YDGVRAQVH  EDGSLRFFSR+SKD+SSELPDL+PVMKDC  EGV SYVIDTEVVAYDR+TGNLLPFQMLSTRGRKDV+A++VKVKVIVEAFD++YLNG+ LLQ+PL++RR+ LRS+FKEV+GRFRFATFMDHKEDGDTGPIEEFLSEAVKGNCEGLMVKTLT N+SYEPSKRSLNWLKLKKDYLQADGGGVGDSLDLVPIGAFFGKGKRTG   +YL+
Sbjct:  680 KYDGVRAQVHHKEDGSLRFFSRNSKDSSSELPDLIPVMKDCVKEGVSSYVIDTEVVAYDRETGNLLPFQMLSTRGRKDVDAEDVKVKVIVEAFDMLYLNGQSLLQKPLKQRRRLLRSTFKEVDGRFRFATFMDHKEDGDTGPIEEFLSEAVKGNCEGLMVKTLTANSSYEPSKRSLNWLKLKKDYLQADGGGVGDSLDLVPIGAFFGKGKRTGKYGAYLL 899
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BLAST of mRNA_S-dermatodea_contig11928.1208.1 vs. uniprot
Match: A0A836CMS0_9STRA (DNA ligase (ATP) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMS0_9STRA)

HSP 1 Score: 298 bits (763), Expect = 1.800e-94
Identity = 142/220 (64.55%), Postives = 183/220 (83.18%), Query Frame = 1 
Query:   13 RYDGVRAQVHLMEDGSLRFFSRSSKDNSSELPDLVPVMKDCAAEGVKSYVIDTEVVAYDRDTGNLLPFQMLSTRGRKDVNADEVKVKVIVEAFDIIYLNGKPLLQRPLQERRKALRSSFKEVEGRFRFATFMDHKEDGDTGPIEEFLSEAVKGNCEGLMVKTLTENASYEPSKRSLNWLKLKKDYLQADGGGVGDSLDLVPIGAFFGKGKRTGATFSYLI 672
            +YDG R+Q+HL+ DG LRFF+R+S++ +S+ PDL+PVM+  A EGV SYV+D+EVVA DR +G LLPFQ+LSTR RKD   D+VKV+++++AFD++YLNG+ LLQ PLQ RR+AL ++FKE  G F FA  +D++E+GDT PIE F++EAVKGNCEGLMVKTLT NA+YEPS+RSLNWLKLKKDYL  DG  V DSLDLVPIGA++G+GKR GA  +YL+
Sbjct:  287 KYDGERSQIHLLPDGKLRFFTRNSEEATSKYPDLIPVMQAAAGEGVTSYVLDSEVVAIDRTSGQLLPFQVLSTRKRKDETVDDVKVQIVIQAFDLLYLNGRSLLQEPLQARREALHAAFKESPGHFGFAISLDYQENGDTEPIEAFMAEAVKGNCEGLMVKTLTHNATYEPSRRSLNWLKLKKDYLD-DGSSVADSLDLVPIGAYYGRGKRAGAFGAYLL 505
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BLAST of mRNA_S-dermatodea_contig11928.1208.1 vs. uniprot
Match: A0A7S3Y279_HETAK (DNA ligase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y279_HETAK)

HSP 1 Score: 275 bits (704), Expect = 3.060e-85
Identity = 134/220 (60.91%), Postives = 171/220 (77.73%), Query Frame = 1 
Query:   13 RYDGVRAQVHLMEDGSLRFFSRSSKDNSSELPDLVPVMKDCAAEGVKSYVIDTEVVAYDRDTGNLLPFQMLSTRGRKDVNADEVKVKVIVEAFDIIYLNGKPLLQRPLQERRKALRSSFKEVEGRFRFATFMDHKEDGDTGPIEEFLSEAVKGNCEGLMVKTLTENASYEPSKRSLNWLKLKKDYLQADGGGVGDSLDLVPIGAFFGKGKRTGATFSYLI 672
            +YDG RAQVHL+ DG+ R FSR+S+DNS + PD++ ++       V+S VID EVVAYDR+   LLPFQ+LSTR RK+ +A ++KV+V+++AFD++YLNG+  LQ  L+ RR ALR  F+E EGRF FA  MDH EDGDT P+E+FL E+VK  CEGLMVKTL EN++YEPS+RSLNWLKLKKDYL  D  GV DS+D+VPIGA+ GKGKRTG   +YL+
Sbjct:  336 KYDGERAQVHLLPDGTFRIFSRNSEDNSQKYPDVMAILAGAKRGHVRSIVIDAEVVAYDREKKELLPFQVLSTRKRKEESAADIKVQVVLQAFDLLYLNGRSYLQETLEARRAALRGCFEEAEGRFMFAVSMDHTEDGDTAPVEQFLEESVKAACEGLMVKTLVENSAYEPSRRSLNWLKLKKDYL--DNMGVADSVDVVPIGAYMGKGKRTGVYGAYLL 553
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BLAST of mRNA_S-dermatodea_contig11928.1208.1 vs. uniprot
Match: D8M844_BLAHO (DNA ligase n=1 Tax=Blastocystis hominis TaxID=12968 RepID=D8M844_BLAHO)

HSP 1 Score: 266 bits (679), Expect = 5.230e-82
Identity = 125/220 (56.82%), Postives = 173/220 (78.64%), Query Frame = 1 
Query:   13 RYDGVRAQVHLMEDGSLRFFSRSSKDNSSELPDLVPVMKDCAAEGVKSYVIDTEVVAYDRDTGNLLPFQMLSTRGRKDVNADEVKVKVIVEAFDIIYLNGKPLLQRPLQERRKALRSSFKEVEGRFRFATFMDHKEDGDTGPIEEFLSEAVKGNCEGLMVKTLTENASYEPSKRSLNWLKLKKDYLQADGGGVGDSLDLVPIGAFFGKGKRTGATFSYLI 672
            +YDG RAQ+H  EDG+++ FSR+++DN+S+ PDLV  ++DC +  V ++++D+E VA+DR+   +LPFQ+LSTR RK+V  +EVK+ V++ AFD+++LNG+ L+Q+PL+ERR  LR +FKEVEG+  FA+FMD   D DT  I+ FL E+V   CEGLM+KTL ENA+YEPSKRSLNWLKLKKDYLQ     +GDS+DLVPIG ++GKGKRTG   ++L+
Sbjct:  303 KYDGERAQIHRREDGTIKIFSRNNEDNTSKYPDLVKALQDCVSASVGTFIVDSECVAWDREAKRILPFQILSTRARKEVKEEEVKIHVVIFAFDLLFLNGESLIQKPLRERRALLRENFKEVEGKIHFASFMD---DNDTEKIQAFLLESVANGCEGLMIKTLEENATYEPSKRSLNWLKLKKDYLQD----LGDSMDLVPIGGYYGKGKRTGNFGAFLL 515
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BLAST of mRNA_S-dermatodea_contig11928.1208.1 vs. uniprot
Match: A0A7S3LA35_9STRA (DNA ligase n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LA35_9STRA)

HSP 1 Score: 258 bits (658), Expect = 1.010e-80
Identity = 128/220 (58.18%), Postives = 171/220 (77.73%), Query Frame = 1 
Query:   13 RYDGVRAQVHLMEDGSLRFFSRSSKDNSSELPDLVPVMKDCAAEGVKSYVIDTEVVAYDRDTGNLLPFQMLSTRGRKDVNADEVKVKVIVEAFDIIYLNGKPLLQRPLQERRKALRSSFKEVEGRFRFATFMDHKEDGDTGPIEEFLSEAVKGNCEGLMVKTLTENASYEPSKRSLNWLKLKKDYLQADGGGVGDSLDLVPIGAFFGKGKRTGATFSYLI 672
            +YDG RAQVHL+ DG+ + FSR+  D S + P++   +++ A + V+S V+D EVVA+++ TG L+PFQ+LSTR + + +A+  KV+VIV+AFD++YLNG+PLL   L  RR+ L+  F  VEG+F+FA  MDH+EDGDT  IEEFL +AVKG CEGLMVKTL ENA+YEPSKRSLNWLKLKKDYL+    G+GDS+DLVP+GA+ G+GKRTG   +YL+
Sbjct:  120 KYDGERAQVHLLPDGTTKVFSRNLLDTSEKYPEIPLYVREAATD-VQSCVMDAEVVAFNQKTGQLVPFQVLSTRKKTEESAETAKVQVIVQAFDLMYLNGEPLLNTTLAHRRELLKKHFVPVEGKFQFAVSMDHQEDGDTTVIEEFLDQAVKGQCEGLMVKTLEENANYEPSKRSLNWLKLKKDYLE----GLGDSVDLVPLGAYHGRGKRTGVYGAYLL 334
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BLAST of mRNA_S-dermatodea_contig11928.1208.1 vs. uniprot
Match: A0A196SGP3_BLAHN (DNA ligase n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SGP3_BLAHN)

HSP 1 Score: 257 bits (656), Expect = 1.580e-78
Identity = 127/220 (57.73%), Postives = 169/220 (76.82%), Query Frame = 1 
Query:   13 RYDGVRAQVHLMEDGSLRFFSRSSKDNSSELPDLVPVMKDCAAEGVKSYVIDTEVVAYDRDTGNLLPFQMLSTRGRKDVNADEVKVKVIVEAFDIIYLNGKPLLQRPLQERRKALRSSFKEVEGRFRFATFMDHKEDGDTGPIEEFLSEAVKGNCEGLMVKTLTENASYEPSKRSLNWLKLKKDYLQADGGGVGDSLDLVPIGAFFGKGKRTGATFSYLI 672
            +YDG RAQVH + DGS++ FSR+S+DN+++ PDLV  + +   EGV + ++D+E VA+DR+   +LPFQ+LSTR RKDV  ++VK+ V++  FDI++LNG+ ++QRPL+ERR  LRS+  EV GR +FAT    +E  DT  I+EFL E+V   CEGLMVKTLTENA+YEPSKRSLNWLKLKKDYLQ     +GDSLDLVPIG ++GKGKRTG   ++L+
Sbjct:  303 KYDGERAQVHKLPDGSIKIFSRNSEDNTNKYPDLVKTLHESIPEGVTTCILDSECVAWDREQNKILPFQVLSTRARKDVKEEDVKIHVVIFMFDILFLNGESVIQRPLKERRALLRSTIHEVPGRMQFAT---SRELADTEEIQEFLMESVNAGCEGLMVKTLTENATYEPSKRSLNWLKLKKDYLQD----LGDSLDLVPIGGYYGKGKRTGNFGAFLL 515
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BLAST of mRNA_S-dermatodea_contig11928.1208.1 vs. uniprot
Match: B8BW47_THAPS (DNA ligase n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BW47_THAPS)

HSP 1 Score: 256 bits (654), Expect = 2.040e-78
Identity = 127/221 (57.47%), Postives = 168/221 (76.02%), Query Frame = 1 
Query:   13 RYDGVRAQVHLMEDGSLRFFSRSSKDNSSELPDL-VPVMKDCAAEGVKSYVIDTEVVAYDRDTGNLLPFQMLSTRGRKDVNADEVKVKVIVEAFDIIYLNGKPLLQRPLQERRKALRSSFKEVEGRFRFATFMDHKEDGDTGPIEEFLSEAVKGNCEGLMVKTLTENASYEPSKRSLNWLKLKKDYLQADGGGVGDSLDLVPIGAFFGKGKRTGATFSYLI 672
            +YDG RAQVH+  DG  + FSRS  + S + P++ + V + C    V S+V+DTEVVA++R T   +PFQ+LSTR + + +A++ KVKVIV+AFD++YLNG+ LL RPL ERR+ +R +F  V G+F+FAT +DH EDGDT  +EEFL  AVKG CEGLMVKTL  NA+YEPS+RSLNWLKLKKDYL+    G+GDS+DLVP+GA+ G+GKRTG   +YL+
Sbjct:  280 KYDGERAQVHMTPDGKTKVFSRSLLNTSEKFPEVPLYVQEACKETSVTSFVLDTEVVAFNRVTQQFVPFQVLSTRKKTEESAEDAKVKVIVQAFDLMYLNGESLLDRPLAERRELMRKNFIPVPGKFQFATSLDHTEDGDTAVVEEFLDNAVKGQCEGLMVKTLDVNAAYEPSRRSLNWLKLKKDYLE----GLGDSVDLVPLGAYHGRGKRTGVYGAYLL 496
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BLAST of mRNA_S-dermatodea_contig11928.1208.1 vs. uniprot
Match: A0A6P8J3K6_ACTTE (DNA ligase n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8J3K6_ACTTE)

HSP 1 Score: 248 bits (633), Expect = 4.060e-78
Identity = 126/220 (57.27%), Postives = 164/220 (74.55%), Query Frame = 1 
Query:   13 RYDGVRAQVHLMEDGSLRFFSRSSKDNSSELPDLVPVMKDCAAEGVKSYVIDTEVVAYDRDTGNLLPFQMLSTRGRKDVNADEVKVKVIVEAFDIIYLNGKPLLQRPLQERRKALRSSFKEVEGRFRFATFMDHKEDGDTGPIEEFLSEAVKGNCEGLMVKTLTENASYEPSKRSLNWLKLKKDYLQADGGGVGDSLDLVPIGAFFGKGKRTGATFSYLI 672
            +YDG RAQ+HL+E+G +  +SR+ +DN+S+ PD++  M    +  VKS++IDTE VA+DR+   +LPFQ+LSTR RKD  A ++KV+V V AFD+IYLNGK  ++ P   RR+ LRSSFKEVEG F FAT M      +T  IEEFL E++KGNCEGLMVKTL ++A+YE +KRS NWLKLKKDYL AD   VGD+LDLV IG + GKGKRTG+   +L+
Sbjct:   26 KYDGERAQIHLLENGEIHIYSRNQEDNTSKFPDIIARMSKAFSSDVKSFIIDTEAVAWDRERKQILPFQVLSTRKRKDAEASQIKVQVCVYAFDLIYLNGKSYIKEPFSVRRETLRSSFKEVEGEFMFATCMTST---NTEDIEEFLEESIKGNCEGLMVKTLDKDATYEIAKRSHNWLKLKKDYL-AD---VGDTLDLVVIGGYLGKGKRTGSYGGFLL 238
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BLAST of mRNA_S-dermatodea_contig11928.1208.1 vs. uniprot
Match: B5Y3V2_PHATC (DNA ligase n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B5Y3V2_PHATC)

HSP 1 Score: 251 bits (640), Expect = 3.500e-76
Identity = 128/220 (58.18%), Postives = 163/220 (74.09%), Query Frame = 1 
Query:   13 RYDGVRAQVHLMEDGSLRFFSRSSKDNSSELPDLVPVMKDCAAEGVKSYVIDTEVVAYDRDTGNLLPFQMLSTRGRKDVNADEVKVKVIVEAFDIIYLNGKPLLQRPLQERRKALRSSFKEVEGRFRFATFMDHKEDGDTGPIEEFLSEAVKGNCEGLMVKTLTENASYEPSKRSLNWLKLKKDYLQADGGGVGDSLDLVPIGAFFGKGKRTGATFSYLI 672
            +YDG RAQVHL+ DG+ R FSR+  D S + P+ VP+    A   V+S+V+D EVVAY+  TG L+PFQ+LSTR + + +A+  KV+VIV+AFD++YLNGK LL + L  RR  L   F+ V G+F+FA  +DHKEDGDT  +EEFL  AVKG CEGLMVKTL  NA YEPS+RSLNWLKLKKDYL     G+GDS+DLVP+GA+ G+GKRTG   +YL+
Sbjct:  301 KYDGERAQVHLLPDGTTRVFSRNLLDTSEKYPE-VPLFVKEACRNVESFVLDAEVVAYNNKTGQLVPFQILSTRKKTEESAETAKVQVIVQAFDLMYLNGKSLLNQTLAARRSLLMEHFEAVPGKFQFAKSLDHKEDGDTTVLEEFLDSAVKGQCEGLMVKTLEVNAIYEPSRRSLNWLKLKKDYLD----GLGDSVDLVPLGAYHGRGKRTGFYGAYLL 515
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BLAST of mRNA_S-dermatodea_contig11928.1208.1 vs. uniprot
Match: K0SNZ5_THAOC (DNA ligase (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SNZ5_THAOC)

HSP 1 Score: 251 bits (642), Expect = 5.050e-76
Identity = 123/221 (55.66%), Postives = 166/221 (75.11%), Query Frame = 1 
Query:   13 RYDGVRAQVHLMEDGSLRFFSRSSKDNSSELPDL-VPVMKDCAAEGVKSYVIDTEVVAYDRDTGNLLPFQMLSTRGRKDVNADEVKVKVIVEAFDIIYLNGKPLLQRPLQERRKALRSSFKEVEGRFRFATFMDHKEDGDTGPIEEFLSEAVKGNCEGLMVKTLTENASYEPSKRSLNWLKLKKDYLQADGGGVGDSLDLVPIGAFFGKGKRTGATFSYLI 672
            +YDG RAQVH    G  + FSR+  D + + P++ + V + C +  VKS+V+DTEVVA++R+TG  +PFQ+LSTR + + +A+  KV+VIV+AFD++YLNG+ LL +PL  RR+ L  +F  VEG+F++AT +DH EDG+T  IEEFL  AVKG CEGLMVKTL  NA YEP +RSLNWLKLKKDYL+    G+GDS+DLVP+GA+ G+GKRTG   +YL+
Sbjct:  297 KYDGERAQVHCTPGGETKVFSRNLLDTTEKFPEVPLYVRESCGSTDVKSFVLDTEVVAFNRETGQFVPFQVLSTRKKTEESAESAKVQVIVQAFDLMYLNGESLLDKPLSHRRELLHKNFLPVEGKFQYATALDHTEDGETAVIEEFLDAAVKGQCEGLMVKTLDVNAVYEPDRRSLNWLKLKKDYLE----GLGDSVDLVPLGAYHGRGKRTGVYGAYLL 513
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11928.1208.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFE0_ECTSI2.140e-12585.91DNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8L... [more]
A0A836CMS0_9STRA1.800e-9464.55DNA ligase (ATP) n=1 Tax=Tribonema minus TaxID=303... [more]
A0A7S3Y279_HETAK3.060e-8560.91DNA ligase n=1 Tax=Heterosigma akashiwo TaxID=2829... [more]
D8M844_BLAHO5.230e-8256.82DNA ligase n=1 Tax=Blastocystis hominis TaxID=1296... [more]
A0A7S3LA35_9STRA1.010e-8058.18DNA ligase n=1 Tax=Amphora coffeiformis TaxID=2655... [more]
A0A196SGP3_BLAHN1.580e-7857.73DNA ligase n=1 Tax=Blastocystis sp. subtype 1 (str... [more]
B8BW47_THAPS2.040e-7857.47DNA ligase n=1 Tax=Thalassiosira pseudonana TaxID=... [more]
A0A6P8J3K6_ACTTE4.060e-7857.27DNA ligase n=1 Tax=Actinia tenebrosa TaxID=6105 Re... [more]
B5Y3V2_PHATC3.500e-7658.18DNA ligase n=1 Tax=Phaeodactylum tricornutum (stra... [more]
K0SNZ5_THAOC5.050e-7655.66DNA ligase (Fragment) n=1 Tax=Thalassiosira oceani... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11928contigS-dermatodea_contig11928:641..6717 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score389.0
Seed ortholog evalue1.5e-105
Seed eggNOG ortholog2880.D8LFE0
Preferred nameLIG1
KEGG rclassRC00005
KEGG koko:K10747
KEGG ReactionR00381,R00382,R10822,R10823
KEGG Pathwayko03030,ko03410,ko03420,ko03430,map03030,map03410,map03420,map03430
GOsGO:0000012,GO:0000228,GO:0000278,GO:0000302,GO:0000726,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003909,GO:0003910,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005730,GO:0005737,GO:0005739,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006266,GO:0006271,GO:0006273,GO:0006281,GO:0006283,GO:0006284,GO:0006289,GO:0006297,GO:0006298,GO:0006302,GO:0006303,GO:0006304,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0006996,GO:0007049,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009636,GO:0009653,GO:0009987,GO:0010035,GO:0016043,GO:0016070,GO:0016874,GO:0016886,GO:0022402,GO:0022616,GO:0031974,GO:0031981,GO:0032502,GO:0033260,GO:0033554,GO:0033567,GO:0034641,GO:0034645,GO:0035510,GO:0035753,GO:0042221,GO:0042493,GO:0042542,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043570,GO:0043596,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044728,GO:0044786,GO:0046483,GO:0046677,GO:0048856,GO:0050896,GO:0051103,GO:0051276,GO:0051716,GO:0070013,GO:0070988,GO:0071704,GO:0071840,GO:0080111,GO:0090304,GO:0097159,GO:0140097,GO:1901360,GO:1901363,GO:1901576,GO:1901700,GO:1902969,GO:1903047,GO:1903461
EggNOG free text desc.DNA ligase (ATP) activity
EggNOG OGsCOG1793@1,KOG0967@2759
EC6.5.1.1,6.5.1.6,6.5.1.7
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03032,ko03400
Hectar predicted targeting categoryother localisation
Exons6
Model size672
Cds size672
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11928.1208.1prot_S-dermatodea_contig11928.1208.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11928 641..6717 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924223.6450117-CDS-S-dermatodea_contig11928:640..8081622924223.6450117-CDS-S-dermatodea_contig11928:640..808Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11928 641..808 -
1694079105.9082875-CDS-S-dermatodea_contig11928:640..8081694079105.9082875-CDS-S-dermatodea_contig11928:640..808Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11928 641..808 -
1622924223.6570513-CDS-S-dermatodea_contig11928:1694..17811622924223.6570513-CDS-S-dermatodea_contig11928:1694..1781Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11928 1695..1781 -
1694079105.9203138-CDS-S-dermatodea_contig11928:1694..17811694079105.9203138-CDS-S-dermatodea_contig11928:1694..1781Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11928 1695..1781 -
1622924223.679671-CDS-S-dermatodea_contig11928:2927..30291622924223.679671-CDS-S-dermatodea_contig11928:2927..3029Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11928 2928..3029 -
1694079105.928638-CDS-S-dermatodea_contig11928:2927..30291694079105.928638-CDS-S-dermatodea_contig11928:2927..3029Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11928 2928..3029 -
1622924223.688693-CDS-S-dermatodea_contig11928:3715..38111622924223.688693-CDS-S-dermatodea_contig11928:3715..3811Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11928 3716..3811 -
1694079105.9359837-CDS-S-dermatodea_contig11928:3715..38111694079105.9359837-CDS-S-dermatodea_contig11928:3715..3811Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11928 3716..3811 -
1622924223.6969466-CDS-S-dermatodea_contig11928:5263..53531622924223.6969466-CDS-S-dermatodea_contig11928:5263..5353Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11928 5264..5353 -
1694079105.9448516-CDS-S-dermatodea_contig11928:5263..53531694079105.9448516-CDS-S-dermatodea_contig11928:5263..5353Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11928 5264..5353 -
1622924223.7112808-CDS-S-dermatodea_contig11928:6588..67171622924223.7112808-CDS-S-dermatodea_contig11928:6588..6717Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11928 6589..6717 -
1694079105.9617662-CDS-S-dermatodea_contig11928:6588..67171694079105.9617662-CDS-S-dermatodea_contig11928:6588..6717Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11928 6589..6717 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11928.1208.1

>prot_S-dermatodea_contig11928.1208.1 ID=prot_S-dermatodea_contig11928.1208.1|Name=mRNA_S-dermatodea_contig11928.1208.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=224bp
MKCGRYDGVRAQVHLMEDGSLRFFSRSSKDNSSELPDLVPVMKDCAAEGV
KSYVIDTEVVAYDRDTGNLLPFQMLSTRGRKDVNADEVKVKVIVEAFDII
YLNGKPLLQRPLQERRKALRSSFKEVEGRFRFATFMDHKEDGDTGPIEEF
LSEAVKGNCEGLMVKTLTENASYEPSKRSLNWLKLKKDYLQADGGGVGDS
LDLVPIGAFFGKGKRTGATFSYLI
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mRNA from alignment at S-dermatodea_contig11928:641..6717-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11928.1208.1 ID=mRNA_S-dermatodea_contig11928.1208.1|Name=mRNA_S-dermatodea_contig11928.1208.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=6077bp|location=Sequence derived from alignment at S-dermatodea_contig11928:641..6717- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAAATGCGGCAGGTATGACGGGGTTCGGGCGCAGGTGCACCTGATGGA
GGATGGGTCTCTGCGATTCTTCAGCCGCAGCAGCAAGGACAACTCGTCCG
AGTTACCGGATCTTGTTCCCGTCATGAAGGTGTGGAAACGTATCATATCA
TGTCTGATATTTTCTCGATTTCTCCATGTCTGATGATATCGTGTTTGATG
ATATCGTGTCTGATGATACCATGTCTGATAATATCGTGTTGGATGATATC
ATGGCTGATGATATCGTGTCTGATGATACCATGTCTGATAACATCGTGTT
GGATGATATCATGGCTGATGATATCATGTCTGACGCTATCGTGTTTGATA
ATATCGTGTTTGATTATATCATGTCTGATGATTTCTCGATTTCTCATATG
ACCACGAGCGAGGTCGGCAACCGGTCGGTTGGTTGTAAGTGTGATGATTT
CGAAAGTTAAATCCAAAATTCATTGGCACTGAAAACCTCAAGGAAAACAT
AAAAATCGAGCAAGTGTGAATGTGTGAGAACGTGTCATGTAGAGTTTTTC
AATCAGTATGTACTTCTTAGTATGAGTAGCGAACAGGCTTTTCCTGCCTT
CAGTTTTTTTTTTGGACCTTGTAATGCTATATTGTTTTTCGCTACATGTC
CATCTTTTAGGTGCGCGTTGGCCGATTTTTTCGATTGCGGCTCGGAGGAG
TGTGAAGACCGTGTCCCTGTAGTGGCGGGATGCCCGTTTCATGAAAAGGA
GAGAGAAGTGTACATTGCTGAGCTGGGGAAAATTAAAGGCTGTGACAGAG
AGACGTTTGAAGCATGGGACAGCCAGACGAAGGCGGTAGCTTTACTCGGG
GATAAGAAGTTGCCTGAGAAGGCGAGAAGTGATGCAGACAGGATAGGAAA
ATCAATTTTTGCGCCACCTTTGGCAGAGCAGGAAGGAACGGTTGGCCATC
GGCGATAGATCGATCCTGAATAATAACAATGCGCCGTCCGTCCTACCTCT
CGAGGACGCGTGGTCAATGCCCTAACAGTAACAGATAAGGCATGCAAAAC
TTGAGTGCGCCACATCGATCTTCTTACAGCACGCTGGATTTCGAGATCAC
CTCCTGATACTGTAGCATGATACCATCATCGTCATCATCGCCACTGGCAG
CACCATCACCACTGCTGTGCACTACTCATAGCGTGCTATTATATATAACT
CGTTTTTTTCTCTCTTCTATTCAATCCCGCTTAATCGGCACGATGGGGTT
CGTGCTATATATCCTGAGCGCTTGTCTGTGATTCTGCTCTCGCTCGGGTG
TCGACGATTTACCGTAATTTTGTCGCGTGTTTGCGCGCGCGCATGTCTGT
TTTTATCACGACAGGACTGCGCGGCGGAGGGGGTAAAATCGTACGTGATC
GATACCGAGGTCGTGGCCTACGATCGCGACACGGGCAATCTCCTTCCCTT
CCAGGTATTGATTGGGTTGGTTTTATTTGATCGATTGGCGCACGTATACT
GTAGCCGACCGGCTTAATCCGACCCGACTTGTGGTCAGATGACTTTCGCA
AATAGCCTGTTGAGGAGGAAATTATTTATCAGAACTACTTGTACAGCCAC
AAAGTACCGTCCCTGGTACCTACTAGGTAGCCACGGCTACGCCCGTGAGG
TGTGGGTTGGTAGGACGTGGTCGCTCAACTCTAAAATCAAGTTTTTTGGC
GCTCAACGCAAACATGGAGTTGTTTGGAATCACCCAAGAATCGTATAGCA
GGAGTTTGTTGGACAACAACTCACTCAAAAATTGCTATTAAAAAACGTTC
AAACCGCTACTATTACTAATTGATAAAGACGTCAGAAGAAGAATCGGAAT
CGGACAGGTGACAGTATAGTATATAGCAGTATATAGCAGTGTATAGTATA
AAGTAACGAAATGGCCGAAGTGAAGGGTTCTGATCGGGACGTGAGGTCTG
TTTTGGGCGTTCGGTAAGGATATTGAAGTATCACTGGCCTACAGCCTGTA
GTGTGAGTGAAGCACTGCGGTAGCCTACTGTACCTACTTTTGATTCAGCC
AGCGCGGTGTTATCAGCCGGCTTTGTGCGTAGCGAACGCATACCCTCCTT
ACATTGGTGGATTGGTTTATTGATTTGATTGATTTGATTGATTTGATTGA
TTTGATTGGTTGATTGGTCGATTGATTGATTGATGAGTTGATTGAGCTAG
ATGCTCTCTTTCCTATCCTCCCAAAGGACCGGCCTATCATACTAACTTTA
CTATGATACTACACACCTCTTTCACCGGATATGTCTGTCCTATTCTATCC
TCCAAACGACTGGCCTATCATACTAACTTTAATACTGCACACCTCATTTA
CCAGAGACTTCTGTCCTATTCTATCCTCCCAAACGACCGGCCTATCATAC
TAACTTTAATACTGCACACCTCCTTTACCAGATACGTCTGTCATATTCTA
TCCTCCAAGCCGACCGGCCTATCGTACTAACTTTAAGGCCGCACTCCCTT
TTACCACTATTAATTATTAATAGCTACGCCAGTGGGGTGAAAAATCTTAC
TCTTTTCAACACTTGATCATAAAGGCTCCCTCTGAAATCACTGATTTTTG
GCCTTCAGTTACTGTATCAACGTTTCACCAATCAACTCTAAACCACTGTT
AAAAATCGATCAAAGCGCTATTCATTAGTAAAGATACTATTAATAAATGT
CTGTCCTATCAATTCCTTCTTTGTATGTACTATATATATTAGGTGATCCG
TAGGGTTTTTTCTCGGTCTCCCGATTTTTTTCATCTGACCACGAGCGGGA
TCGGCAACCATTGGTGGGCCGGTCGGTTGTACCAGTATGTGTGATAATAA
TAATAATAATATCCTCCTATCGAGCTAACCTTAATGCCGCCCCTCTCTTC
ATGCAGATGTTGTCCACCCGAGGGAGAAAAGACGTGAACGCCGACGAGGT
CAAGGTTAAGGTCATCGTCGAAGCCTTCGACATCATCTACCTCAACGGCA
AGGTGATGACGCCACCAGGCATAGTTGAAGGAACGCCTCTTCGCGTGTAA
ATCATCGGCCTCCTCCACGCGTGTACTATTAATAGTATTGTATGCAAGCC
GCTGTTTCCCTTATTGTAGCGCCCACCGCCTCTCGAGGGCCATTCAGTTA
GCTCGCGAGGCCTTGTCAGTTCATGACGTGATACATAGCGGTCACATTTT
CCTCCTTCCTTCATAGCACCTTGTGATGGTACGTTTCCTGCAGCTGTGAG
TCAGGGTGTCTGGCGTTCCGGGCGGCGTGCGGGTTATACATATACTTCGA
AGTATCTGTCATATCTGGGCATCCGTTTTTTGTTCGGTGTATGATATAGG
GGTGCTGGATCCCCACTTTCTCTTGTGCCTTCATGTGAACACTATTAATA
TTAATATTAGTATTATAATTAATATTGAGATTATTAATTACCTTAATTAA
TAATTATATGAATGTTAATATTAATAGGGGGATCGGCAACCATTTTTGCA
ATGGCAAAGTTTAATAATGGCGGGCCGGTCGGTTGTATGTGTGACAAATC
AATAAAAAAAAGTACATATGCTCCCTTTTTTCTGTCACGGGTGATGTACT
GTATTAATAGAGCTATTTACATCTCGTAATATTGTCTCTCTCTCGTGTTC
TTGCTTTTTTTTTCTCATCTCCTTTTGTTTTTGTGAAGCCGTTGCTCCAG
CGGCCGCTCCAAGAGAGGAGAAAAGCGCTCCGCAGCAGCTTCAAGGAGGT
CGAGGGCCGCTTCAGGTTCGCCACCTTCATGGACCACAAGGTACAGATGA
TACCGTCGGCGCGGGTTGGCTTTTGCTCATTCAGTTCTATCAAAAGAACC
GCGGGAGTAAAAATGTGTATTATATAATTAACACCGCTTTGAAACACTTT
TTTAGTATTGGCGATTTAGAGTTGAGCAAAATTCGATTTCTGTACCCCAA
ATCCTGTACAATTTCTTAAACTGAAATCCTATACAATTCTTGAAGCCCAA
TTGTGAAGCCACTAACTTAAGAGAAGAGCACCTTTATCGTCCTGCCAACC
CACACCTCATGGGCGTAGCCGTGGCTATTAATACATTAATACCTACTAAA
TAGTGTGTACGAAGGCCTATAATAGGTTGTGTTCGTTTTTTCCGGGGCTT
TTGACATGACCGGCGATTACACATGTCTTTCACGCGGTCAGCACCGAAAC
CGGTTCGTTGGCGGTACTGTAGGGTAGTGTGATATTTTTACATTCGCCAA
CCGACGGTCGGCGGTTGGTACCTTACTTGATTGATTGATTGATTGATTGA
TTGTCACACATGCAACCGACCGGCCCGCCATTTTTGCAATTGCAAAATTG
GGTGCTGATCCCGCTCGCGCGTGGTGACATGAAGGCACAAGAGCAATTGA
AATCCAGCACCCATATCATACACCGAACAACAAACTAACTGATGTCCAGA
CATGACAGAGATATAACCCGCACGCCGCCCGGCGGAGCGCTGTGGTGCAA
GGAATATTTTGGTCTGCGCTGGTAGGGTTGTGTACTGTAGTGTAAGGAAT
TATTTTAGTCTGCGCTGGTAGGGTAGAGCCTAGTAATACAACAACGTACA
CAACCGATTGGCGGCACTGTAGGGTATTGGTACTGTACTGGTACTGTAGG
GTAGTGTGTCCCGTCACAGCCGGCCATGTGAAAGGCCCTGATTGCTTATC
ATGTCCTTGTGCTTGCAGAGCTATACACTATAAGGAGTTGCACTTTTTTT
TCGATGAATCGTTTTGTTTATCTGACCACGAGCGGGAGAAGGGTCGGCGG
CGGCTATTGGCGGGCGTGCCGCTTCTTGTTCTCGAAAAAGTGCCATTCGG
TTGTAAGTGTGACAAATAAATAAATCAATCAATCAATCAATCAATGTCCT
AACCAAGTCTGGCGAACCTAACCTTCTCGCACACAGGAGGACGGCGACAC
CGGTCCGATCGAGGAGTTCCTATCCGAGGCGGTGAAGGGTAACTGCGAGG
GCCTGATGGTCAAGACGCTCACGGTGAGCACGCCCTTCGAATAATTGAAT
TCGACCGTGTGGCTCGCGTATCGCGCGAGGGGCCGACCTTCATTTATTCC
GAACCTCGGCTGTGTGGTGACCAGGGATGAATAGAGCCGTTTTATAGCTC
TGAGTAGTTATTTTTCTCCTTGACTCTTTGCGTATCGGACCACAAGTCGG
GTCGGATTAAGCCGATCGGTTATACGTGTGCGAATCAATCAATCAATAGC
TGATCTTGGATTCGCACCCCAGTAGCTTAGCTTTAGCTAATAGCCGATTT
TCTCTTGCGTAGTCCGCTTCCTAACGTTCTCTATATCCCCCTTTCCATCT
CTGCCAGTAGCTTCGATGACGACGATTTTTTTACCCCTCCAGGAAAACGC
CTCCTGACCGTGTGGCTCACGTGTCGTACGAGTGACCGGCCTTGCTTGAA
TCCAAACCCCGGCTGTGGTGACGAGGGCTGAGTCGATCTGTTTTATTGAT
CACGTTGGATGTAGCAACCCCACCGTAGGTAGCTCTCTATCGTCTGACCG
ATTTCTCTTTCGGATCTTGCTTCCTAACGCTCTCGATTCCCCTTCTTCCA
TCGCCACCATTGGCTTCGATGATGATAATTTCCGTTTTATTTTTTTCGTA
TCTACTATGATAGGGCTCTAGACCTAGAGCTCTATATAAATAGAGGAATT
TCCGTAATTTGTTTTTCAGATTTCTCGATTTCTCTTCTGACCACGGGCGG
GATCGGCAACTATTAATACTGTTCATTGGTTGGCCGTTGGGTCGGTCGGT
TGCATGTGTGATATTCAATCAATGAATAATTCGATCAAACGCTCTATTCT
CTATCCTCCTTTCGATCGCTGCCATTGGCTTCGATTATGATCATTTTTGT
TCCCGCAAGGAAAACGCCTCCTACGAGCCGTCGAAGCGGTCCCTCAACTG
GCTCAAGCTTAAGAAGGACTACCTCCAGGCGGATGGCGGCGGCGTCGGCG
ACTCTCTCGACCTCGTTCCGATCGGAGCGTTCTTCGGAAAGGGGAAAAGA
ACCGGTGCGACATTCTCTTATCTGATT
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Coding sequence (CDS) from alignment at S-dermatodea_contig11928:641..6717-

>mRNA_S-dermatodea_contig11928.1208.1 ID=mRNA_S-dermatodea_contig11928.1208.1|Name=mRNA_S-dermatodea_contig11928.1208.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1344bp|location=Sequence derived from alignment at S-dermatodea_contig11928:641..6717- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAAATGCGGCAGGTATGACGGGGTTCGGGCGCAGGTGCACCTGATGGA
GGATGGGTCTCTGCGATTCTTCAGCCGCAGCAGCAAGGACAACTCGTCCG
AGTTACCGGATCTTGTTCCCGTCATGAAGATGAAATGCGGCAGGTATGAC
GGGGTTCGGGCGCAGGTGCACCTGATGGAGGATGGGTCTCTGCGATTCTT
CAGCCGCAGCAGCAAGGACAACTCGTCCGAGTTACCGGATCTTGTTCCCG
TCATGAAGGACTGCGCGGCGGAGGGGGTAAAATCGTACGTGATCGATACC
GAGGTCGTGGCCTACGATCGCGACACGGGCAATCTCCTTCCCTTCCAGGA
CTGCGCGGCGGAGGGGGTAAAATCGTACGTGATCGATACCGAGGTCGTGG
CCTACGATCGCGACACGGGCAATCTCCTTCCCTTCCAGATGTTGTCCACC
CGAGGGAGAAAAGACGTGAACGCCGACGAGGTCAAGGTTAAGGTCATCGT
CGAAGCCTTCGACATCATCTACCTCAACGGCAAGATGTTGTCCACCCGAG
GGAGAAAAGACGTGAACGCCGACGAGGTCAAGGTTAAGGTCATCGTCGAA
GCCTTCGACATCATCTACCTCAACGGCAAGCCGTTGCTCCAGCGGCCGCT
CCAAGAGAGGAGAAAAGCGCTCCGCAGCAGCTTCAAGGAGGTCGAGGGCC
GCTTCAGGTTCGCCACCTTCATGGACCACAAGCCGTTGCTCCAGCGGCCG
CTCCAAGAGAGGAGAAAAGCGCTCCGCAGCAGCTTCAAGGAGGTCGAGGG
CCGCTTCAGGTTCGCCACCTTCATGGACCACAAGGAGGACGGCGACACCG
GTCCGATCGAGGAGTTCCTATCCGAGGCGGTGAAGGGTAACTGCGAGGGC
CTGATGGTCAAGACGCTCACGGAGGACGGCGACACCGGTCCGATCGAGGA
GTTCCTATCCGAGGCGGTGAAGGGTAACTGCGAGGGCCTGATGGTCAAGA
CGCTCACGGAAAACGCCTCCTACGAGCCGTCGAAGCGGTCCCTCAACTGG
CTCAAGCTTAAGAAGGACTACCTCCAGGCGGATGGCGGCGGCGTCGGCGA
CTCTCTCGACCTCGTTCCGATCGGAGCGTTCTTCGGAAAGGGGAAAAGAA
CCGGTGCGACATTCTCTTATCTGATTGAAAACGCCTCCTACGAGCCGTCG
AAGCGGTCCCTCAACTGGCTCAAGCTTAAGAAGGACTACCTCCAGGCGGA
TGGCGGCGGCGTCGGCGACTCTCTCGACCTCGTTCCGATCGGAGCGTTCT
TCGGAAAGGGGAAAAGAACCGGTGCGACATTCTCTTATCTGATT
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