mRNA_S-dermatodea_contig11921.1206.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11921.1206.1
Unique NamemRNA_S-dermatodea_contig11921.1206.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig11921.1206.1 vs. uniprot
Match: D7G0K7_ECTSI (HAD-superfamily hydrolase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0K7_ECTSI)

HSP 1 Score: 73.9 bits (180), Expect = 7.050e-15
Identity = 38/46 (82.61%), Postives = 43/46 (93.48%), Query Frame = 1 
Query:    1 TVMFEDSFKNLVTAKALGMSTVFVQSDTAREEGVGASQLLSVDAVV 138
            TVMFEDSFKNLVTA +LGM+TVFVQSDTAREEGVG+ +L +VDAVV
Sbjct:  160 TVMFEDSFKNLVTATSLGMATVFVQSDTAREEGVGSVELDTVDAVV 205
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BLAST of mRNA_S-dermatodea_contig11921.1206.1 vs. uniprot
Match: A0A836C9Z4_9STRA (HAD-superfamily hydrolase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9Z4_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 7.370e-7
Identity = 25/44 (56.82%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:    7 MFEDSFKNLVTAKALGMSTVFVQSDTAREEGVGASQLLSVDAVV 138
            +FEDS+KN +TAK++GM++V + SDTA EEGV    +  VDAVV
Sbjct:  178 LFEDSYKNCLTAKSVGMTSVLINSDTAIEEGVTEEMMAHVDAVV 221
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BLAST of mRNA_S-dermatodea_contig11921.1206.1 vs. uniprot
Match: A0A7R9T8G8_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7R9T8G8_MICPS)

HSP 1 Score: 50.1 bits (118), Expect = 2.450e-6
Identity = 24/33 (72.73%), Postives = 25/33 (75.76%), Query Frame = 1 
Query:    1 TVMFEDSFKNLVTAKALGMSTVFVQSDTAREEG 99
            T  FEDS KNL  AK LGM+TV VQ DTAREEG
Sbjct:   76 TAFFEDSVKNLAAAKTLGMTTVLVQGDTAREEG 108
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BLAST of mRNA_S-dermatodea_contig11921.1206.1 vs. uniprot
Match: C1N9D1_MICPC (Predicted protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1N9D1_MICPC)

HSP 1 Score: 50.1 bits (118), Expect = 8.510e-6
Identity = 24/33 (72.73%), Postives = 25/33 (75.76%), Query Frame = 1 
Query:    1 TVMFEDSFKNLVTAKALGMSTVFVQSDTAREEG 99
            T  FEDS KNL  AK LGM+TV VQ DTAREEG
Sbjct:  298 TAFFEDSVKNLAAAKTLGMTTVLVQGDTAREEG 330
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BLAST of mRNA_S-dermatodea_contig11921.1206.1 vs. uniprot
Match: A0A8J9WIE3_9CHLO (Probable suppressor of disruption of TFIIS n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9WIE3_9CHLO)

HSP 1 Score: 47.8 bits (112), Expect = 4.080e-5
Identity = 27/47 (57.45%), Postives = 31/47 (65.96%), Query Frame = 1 
Query:    1 TVMFEDSFKNLVTAKALGMSTVFVQSDTAREEGVG-ASQLLSVDAVV 138
            T MFEDS KNL TAKALGM+T+ +   TA EEG   AS L   D +V
Sbjct:  140 TAMFEDSVKNLRTAKALGMTTLLIAGPTALEEGASTASDLQHCDGIV 186
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11921.1206.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G0K7_ECTSI7.050e-1582.61HAD-superfamily hydrolase n=2 Tax=Ectocarpus TaxID... [more]
A0A836C9Z4_9STRA7.370e-756.82HAD-superfamily hydrolase n=1 Tax=Tribonema minus ... [more]
A0A7R9T8G8_MICPS2.450e-672.73Hypothetical protein n=1 Tax=Micromonas pusilla Ta... [more]
C1N9D1_MICPC8.510e-672.73Predicted protein n=1 Tax=Micromonas pusilla (stra... [more]
A0A8J9WIE3_9CHLO4.080e-557.45Probable suppressor of disruption of TFIIS n=1 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11921contigS-dermatodea_contig11921:132..269 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score71.2
Seed ortholog evalue1.3e-10
Seed eggNOG ortholog2880.D7G0K7
KEGG rclassRC00017
KEGG koko:K07025,ko:K18551
KEGG ReactionR02323,R03346
KEGG Pathwayko00760,map00760
EggNOG free text desc.nucleotidase activity
EggNOG OGsCOG1011@1,KOG3109@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size138
Cds size132
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924223.535629-UTR-S-dermatodea_contig11921:131..1371622924223.535629-UTR-S-dermatodea_contig11921:131..137Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11921 132..137 +
1694079105.8227284-UTR-S-dermatodea_contig11921:131..1371694079105.8227284-UTR-S-dermatodea_contig11921:131..137Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11921 132..137 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924223.5460477-CDS-S-dermatodea_contig11921:137..2691622924223.5460477-CDS-S-dermatodea_contig11921:137..269Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11921 138..269 +
1694079105.844395-CDS-S-dermatodea_contig11921:137..2691694079105.844395-CDS-S-dermatodea_contig11921:137..269Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11921 138..269 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11921.1206.1prot_S-dermatodea_contig11921.1206.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11921 138..269 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11921.1206.1

>prot_S-dermatodea_contig11921.1206.1 ID=prot_S-dermatodea_contig11921.1206.1|Name=mRNA_S-dermatodea_contig11921.1206.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=44bp
MFEDSFKNLVTAKALGMSTVFVQSDTAREEGVGASQLLSVDAVV
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mRNA from alignment at S-dermatodea_contig11921:132..269+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11921.1206.1 ID=mRNA_S-dermatodea_contig11921.1206.1|Name=mRNA_S-dermatodea_contig11921.1206.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=138bp|location=Sequence derived from alignment at S-dermatodea_contig11921:132..269+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ACAGTCATGTTTGAGGATTCCTTCAAGAATCTGGTGACCGCCAAGGCTCT
GGGCATGTCCACCGTGTTCGTCCAATCTGACACTGCAAGGGAGGAAGGCG
TCGGTGCCTCACAGCTCCTCTCCGTAGACGCCGTCGTC
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Coding sequence (CDS) from alignment at S-dermatodea_contig11921:132..269+

>mRNA_S-dermatodea_contig11921.1206.1 ID=mRNA_S-dermatodea_contig11921.1206.1|Name=mRNA_S-dermatodea_contig11921.1206.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=264bp|location=Sequence derived from alignment at S-dermatodea_contig11921:132..269+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTTTGAGGATTCCTTCAAGAATCTGGTGACCGCCAAGGCTCTGGGCAT
GTCCACCGTGTTCGTCCAATCTGACACTGCAAGGGAGGAAGGCGTCGGTG
CCTCACAGCTCCTCTCCGTAGACGCCGTCGTCATGTTTGAGGATTCCTTC
AAGAATCTGGTGACCGCCAAGGCTCTGGGCATGTCCACCGTGTTCGTCCA
ATCTGACACTGCAAGGGAGGAAGGCGTCGGTGCCTCACAGCTCCTCTCCG
TAGACGCCGTCGTC
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