mRNA_S-dermatodea_contig119.1196.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig119.1196.1
Unique NamemRNA_S-dermatodea_contig119.1196.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig119.1196.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig119contigS-dermatodea_contig119:3431..7616 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1181
Cds size618
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig119.1196.1prot_S-dermatodea_contig119.1196.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig119 3431..7054 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924222.5433338-CDS-S-dermatodea_contig119:3430..38651622924222.5433338-CDS-S-dermatodea_contig119:3430..3865Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig119 3431..3865 +
1694079105.0116198-CDS-S-dermatodea_contig119:3430..38651694079105.0116198-CDS-S-dermatodea_contig119:3430..3865Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig119 3431..3865 +
1622924222.5521944-CDS-S-dermatodea_contig119:6871..70541622924222.5521944-CDS-S-dermatodea_contig119:6871..7054Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig119 6872..7054 +
1694079105.0218112-CDS-S-dermatodea_contig119:6871..70541694079105.0218112-CDS-S-dermatodea_contig119:6871..7054Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig119 6872..7054 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924222.5596194-UTR-S-dermatodea_contig119:7054..76161622924222.5596194-UTR-S-dermatodea_contig119:7054..7616Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig119 7055..7616 +
1694079105.0318353-UTR-S-dermatodea_contig119:7054..76161694079105.0318353-UTR-S-dermatodea_contig119:7054..7616Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig119 7055..7616 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig119.1196.1

>prot_S-dermatodea_contig119.1196.1 ID=prot_S-dermatodea_contig119.1196.1|Name=mRNA_S-dermatodea_contig119.1196.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=206bp
VSATQKVGGDDRATRRARRRSTRSGCGRDGVPHLSPDSCLAVANPAQPIP
TQGVEPSKEGELEVTGSTRTTGSGDGALRCGGGCKRVEAGNGDALITSRC
TGAERDVSTTFSQGRRRTRACCAFVLGDGCKITSLEQEQREVVVKAQTTE
MLDTIAPGAVDGVVEKGDLDDIMGFSAIKNEGAGEEAVSPLVSLDMSTVG
IKHEG*
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mRNA from alignment at S-dermatodea_contig119:3431..7616+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig119.1196.1 ID=mRNA_S-dermatodea_contig119.1196.1|Name=mRNA_S-dermatodea_contig119.1196.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4186bp|location=Sequence derived from alignment at S-dermatodea_contig119:3431..7616+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTTTCAGCAACGCAGAAAGTTGGCGGGGACGACAGGGCCACGCGGCGAGC
ACGCAGACGATCGACGCGTTCCGGGTGTGGGAGGGACGGTGTACCTCATC
TCTCACCCGATTCATGTTTGGCAGTAGCGAATCCAGCACAACCGATTCCC
ACCCAAGGTGTCGAACCGAGCAAGGAAGGAGAGCTAGAGGTTACTGGCTC
AACAAGAACCACGGGGTCGGGGGACGGTGCTCTACGATGTGGTGGTGGCT
GCAAGCGGGTCGAAGCCGGGAATGGGGACGCGTTGATTACATCGCGTTGT
ACAGGTGCCGAAAGAGATGTCTCCACTACCTTTAGCCAGGGACGCCGTCG
TACCCGCGCGTGTTGTGCCTTTGTCCTTGGGGACGGGTGCAAGATTACAT
CATTGGAGCAAGAACAACGAGAGGTGGTTGTCAAGGTGTGTGGGAAACAA
GTGTTTACCGGCGGGGAGTACGTCGACTTGTCATAGTGTAGGCTTGGCTA
CTGGACAAATTTGCACTTGCAGTGTAGATGTACAAACCAATACCTAAGCA
CTGGCCGTGGGAGCTGCCAAACCAGTATAATACACTACCCCTTACGACCT
GTATAACACCTTAGTGTTATACGGAAACCCATCGAATTACGCCGCGTTGA
AAAGAAAGAGAGGGCACACACAGTCGCACTCCCCTAGGAACATACTTCTG
AATATTGGTGTCGCCGCGATTCCGGATCTAATTGGCATCGTACTTTTTAT
TTTTGTTGGGTCCCGTATTATATTCCGTTCCCGAGTTGATGCCCCTGCAC
AATGTCCAAAATCACTAAATATTTTTCGTGTCGGGAACCCAAATCGCGTA
AACACTCGCCTCTAGCGGGTACCTTCGTGGGCGCCTCTAGCGGCGGGCGG
CTTTGCCGCGACCACTGTACTGGTAGGGTCTAGTGTTGTGGCTGCTGACG
AACCCAGTACTACTGCAGGTACTTGCTGGGTGCGCCAGTAATCAACCCTA
AGATCTGCATTCATCTCTTTTGCTATAGAAATTGCCAGGGGCGGTACTCT
GTATTGCAGGAGTAGATATCTGATCTGTTATTTTCTCCAAAACTCTTTGC
ACCTCTAACTAAAAGACGAGTCCAATTAAGCCACTCGGCTATAGGTGTGC
AAATCAATCAACCAGGCAGTCAAATCAATATAGAACCTGGAATAGCTGGT
ATTTAAAGGGAAACGAAGTGATCATTGTACATGGGGAATCCAACTATTGG
TGGCACACGTAGTGGCCTCGGCCCGTGGAGTGGACGCCATGATCGATTGC
CAAGTAAGGCAGAAATATGTTCTTGACAACCATAGGTCGTTTTGGGGAAT
ATGTTGCCATGTTTTATTACATACACGTCTATACTAAGCATCTCTCACGT
GTGGATAGTGGCTGGGCTACCTGGAAACAGGTATTTGCGACTGTCGACAC
GATTGCCGTGGGATACCGATTCCCCGCGAGCGCTACTTTTCTCGCGAGCG
GTATGTGTAGTGGCAGTATGAAAAACACTACACCGCACGTTGGGCTCCGC
TCTATGTTAATTTTCGAGGCTGGAGAACCGTACCATTGTTTTTTTTCCCC
ATCAAACTCTGTACCTAGTCTACGGCATAGATTGACGCGTCTCGATTCCT
AATATTTTCTCTCAAATGGTTTTTAAATGTCGCCTTGGTTAGCGCCGTAG
TTGCTGATTCAATTGGCGTGTTTTTTGTCGTGCAGGTTAGCTCCCTTCTA
CCCCACATCTCGATCGGTTAGAGCCCTTACCCTCAGCAAGGTTTACTCTA
GTTTATGGACGACGCGAAGGTGGGTGCTGTGTAACCGGACGTTTCTGAGT
GTTTCTCCGGACGTGCCTTTCAAAGAAGAAAAAGGTAAATATAACTTTTG
TTCTGGAACGTGTCTCTGAGAATAGTCATTTTCTCCATTTTACAGGAGGA
GAACGCGTGGGAAAACTACCGAAACCTTCCTCGAGCAAAACTCTGCCAAA
AACATCGTTGCTCGCCTAATACAAACTATGAAACATACACCGGCGACAAG
ACGCGAAGCTTTTTACTGCGTCCCGTGCAGCACACGTAAACCTAACACCA
CACGGCTCTGTAGGGCAACGGTGATTAACGATAGTGAAATTAAACAGACG
ACTAACGCGCTGGTCTCCTTGGTAGTCTCGAAATTTTGCTAGAAGCACCA
GCAGGGTTGTCTCTACTTTAACAACACGTCACCATAACTGCTGTGCCGTC
GGCGTGATGAGATTTTGCGCAAATATTCCTCGCAGACATTAATATATTTC
TCGGCGCCACTGCGCGCCCGCATTTTGATCGATCTCGGGAAAAGAACGAA
GGCTCGACGAGGTGAAAAACCTTCCAGATGCCCGGGATGGGCAACCCACC
CTCAGTATCGTCCAAAACAACCTCGCTTTGGTGCCCTCCACTCCTTTCTT
TATTTGCCTCGCTCATTACGAGTGCAACGCCCTCGCATAGGTGGCAGGGT
ACGCTGTCTCGCTTCGGATAGGTAGCGTGTGTGTTTCAGGCAGGCACATT
CCAAACACTTGCAGTCCTTTTTGTGTTTCATTTCGGGCAGAACTTGGCCA
AGAGAGCGGGTCAAAGACGTTTCCCCGCTGATATACGCTTATGTTTTTGG
ATTGTTTCTTTCTACACGAAATATGATATCACAGTGTGTGCTCAGAAACA
AGGCGGATCCAATCCCCCAGATCGAAACCAACGCTCCGTTATGCGTAGGG
CTAGCGTGGTGGTTTTTACGCGAACAAGAGAATTCCGATTCCGCCGTGTG
GTTCCAAACCATTGCTGCATGTAATATCTTTGTTGGTTTATACAAAGAAC
TAAGAGGCCGACTACGTTATAATTATTCACTGTGTCTTGTTATCGTATGG
TGTACGCAGGGCCGACACAATGTGTGGTTTAATGGCTTCACTCCGCACAT
ATCGCTTACACCGCTTTGTGCCTTTCCGGTTGAAACTAAGTTCGAGGAAC
AGGTGACGTTCGTTGCGGACATTGCTTCCATGGTAGCGGCAAACTCGAAG
AACTTAGGGCGTCGGGTGAACAGTGTCAAGGGTGGACCCGGTACAGCATT
CCAGGCACGTTCTTGGTGCGCGATGCTTAGATGTTATTTTGCTGATTGAT
TTGGAACATTTCTTCTGCTGTTAGAATGGTATCCACTTCCCTTAAAGCAA
CCAAGCATGAAACACGACAGAAGGGTTGACGCTGCCAACAAAGAAACGCC
TTGTAGCCGCCTAACGGGTTGATCGATACGCGAAGACCTCAACACATCTG
CGGGAAGATTTTATGGAATCACGTAGCGCAGCTATCTGTTTCCTGATCCC
ACATCTATCGCAAATTGGTTGGAAATATCTTCGGCAGGAGCTTACGTCAC
AAACTCGCCTTTACACCGAACGTCGATTGTGCCTCTCTCAGGCCCAGACG
ACGGAAATGCTAGACACGATTGCTCCAGGAGCAGTGGACGGGGTTGTGGA
GAAAGGAGACTTGGACGACATCATGGGCTTCAGCGCAATAAAAAATGAGG
GGGCGGGGGAGGAGGCCGTGTCGCCCCTGGTATCCCTAGATATGTCGACG
GTCGGGATCAAACACGAGGGTTAGAAGGCCATTGCGTTGGTGACATCTTT
CGAGCGTTTCTTTTGACATCGTTGGTGTAGGCGGCACGATAGTTTTGGCG
GGACCTTATACGATGGTATGCCACAATGTCTATCGCTTACTGCACGCGTG
TAAATACAACCAGGTTCGTACATGATATTTCCGGGTGGCAGTCGAACAAC
CTTTTTGGGGCGGACATTTTACGCGTTAACGATGCGCCGATCTGTGTCGG
GATAGTTTGGACGATTGTGGTTTTCTAGCAAATTCTTGCAAGGAAACGGA
GATGGGGTGGTCGTGGGGCCCCGGAAACTTTGAAACGACAAAACAACGAG
GATTACAGTCCTGCGGGTTCACGAAACGACCAGCTGTAAACCTCCCACGT
TCAGCAAAATGTCCGGCTTCTATAAGGTCTTCGAGCTGACCACGAGACCT
TATTCCTTAAGATGCGTCGCGAATTCAGTATTCTACGTAGTGGTACATGT
TCACCTATCCACGCGGAAGAAAACGATTTCGTCTGTCTGCGGCATGTACC
GTTGCACTTGGGTTCATTTGATTTCTGCAATCATAC
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Coding sequence (CDS) from alignment at S-dermatodea_contig119:3431..7616+

>mRNA_S-dermatodea_contig119.1196.1 ID=mRNA_S-dermatodea_contig119.1196.1|Name=mRNA_S-dermatodea_contig119.1196.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1236bp|location=Sequence derived from alignment at S-dermatodea_contig119:3431..7616+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTTTCAGCAACGCAGAAAGTTGGCGGGGACGACAGGGCCACGCGGCGAGC
ACGCAGACGATCGACGCGTTCCGGGTGTGGGAGGGACGGTGTACCTCATC
TCTCACCCGATTCATGTTTGGCAGTAGCGAATCCAGCACAACCGATTCCC
ACCCAAGGTGTCGAACCGAGCAAGGAAGGAGAGCTAGAGGTTACTGGCTC
AACAAGAACCACGGGGTCGGGGGACGGTGCTCTACGATGTGGTGGTGGCT
GCAAGCGGGTCGAAGCCGGGAATGGGGACGCGTTGATTACATCGCGTTGT
ACAGGTGCCGAAAGAGATGTCTCCACTACCTTTAGCCAGGGACGCCGTCG
TACCCGCGCGTGTTGTGCCTTTGTCCTTGGGGACGGGTGCAAGATTACAT
CATTGGAGCAAGAACAACGAGAGGTGGTTGTCAAGGTTTCAGCAACGCAG
AAAGTTGGCGGGGACGACAGGGCCACGCGGCGAGCACGCAGACGATCGAC
GCGTTCCGGGTGTGGGAGGGACGGTGTACCTCATCTCTCACCCGATTCAT
GTTTGGCAGTAGCGAATCCAGCACAACCGATTCCCACCCAAGGTGTCGAA
CCGAGCAAGGAAGGAGAGCTAGAGGTTACTGGCTCAACAAGAACCACGGG
GTCGGGGGACGGTGCTCTACGATGTGGTGGTGGCTGCAAGCGGGTCGAAG
CCGGGAATGGGGACGCGTTGATTACATCGCGTTGTACAGGTGCCGAAAGA
GATGTCTCCACTACCTTTAGCCAGGGACGCCGTCGTACCCGCGCGTGTTG
TGCCTTTGTCCTTGGGGACGGGTGCAAGATTACATCATTGGAGCAAGAAC
AACGAGAGGTGGTTGTCAAGGCCCAGACGACGGAAATGCTAGACACGATT
GCTCCAGGAGCAGTGGACGGGGTTGTGGAGAAAGGAGACTTGGACGACAT
CATGGGCTTCAGCGCAATAAAAAATGAGGGGGCGGGGGAGGAGGCCGTGT
CGCCCCTGGTATCCCTAGATATGTCGACGGTCGGGATCAAACACGAGGGT
TAGGCCCAGACGACGGAAATGCTAGACACGATTGCTCCAGGAGCAGTGGA
CGGGGTTGTGGAGAAAGGAGACTTGGACGACATCATGGGCTTCAGCGCAA
TAAAAAATGAGGGGGCGGGGGAGGAGGCCGTGTCGCCCCTGGTATCCCTA
GATATGTCGACGGTCGGGATCAAACACGAGGGTTAG
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