mRNA_S-dermatodea_contig11880.1181.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11880.1181.1
Unique NamemRNA_S-dermatodea_contig11880.1181.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig11880.1181.1 vs. uniprot
Match: A0A6H5JB93_9PHAE (Cytochrome b5 heme-binding domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JB93_9PHAE)

HSP 1 Score: 162 bits (410), Expect = 4.470e-46
Identity = 73/86 (84.88%), Postives = 82/86 (95.35%), Query Frame = 1
Query:    1 QVTTTRNVTSTPFVDWFCGGLQFQVDHHLFPQIPRHNLKKVHTLVESFCKEHGVRYHEATMFEGTKEVLAHLGEVSSAFISEFPAM 258
            QVTTTRNVTSTPFVDWFCGGLQ+QVDHHLFPQIPRHNL+KVHTLVESFCK+H V YHEA+M+EGTKEVL+HL +VS+ FI+EFPAM
Sbjct:  394 QVTTTRNVTSTPFVDWFCGGLQYQVDHHLFPQIPRHNLRKVHTLVESFCKQHDVHYHEASMWEGTKEVLSHLSDVSAEFIAEFPAM 479          
BLAST of mRNA_S-dermatodea_contig11880.1181.1 vs. uniprot
Match: A0A812UH41_SYMMI (Hypothetical protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812UH41_SYMMI)

HSP 1 Score: 142 bits (357), Expect = 1.190e-39
Identity = 64/86 (74.42%), Postives = 72/86 (83.72%), Query Frame = 1
Query:    1 QVTTTRNVTSTPFVDWFCGGLQFQVDHHLFPQIPRHNLKKVHTLVESFCKEHGVRYHEATMFEGTKEVLAHLGEVSSAFISEFPAM 258
            QV+TTRN+TST FVDWFCGGLQ+QVDHHLFP +PRHNLKK H LVESFCK  GV YHE  M+ GTKEVL HL +VS  F++EFPAM
Sbjct:  230 QVSTTRNITSTWFVDWFCGGLQYQVDHHLFPSLPRHNLKKAHELVESFCKSEGVTYHETDMWVGTKEVLMHLSKVSREFVTEFPAM 315          
BLAST of mRNA_S-dermatodea_contig11880.1181.1 vs. uniprot
Match: A0A835YVN5_9STRA (Delta-6 desaturase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVN5_9STRA)

HSP 1 Score: 142 bits (357), Expect = 2.120e-38
Identity = 66/86 (76.74%), Postives = 72/86 (83.72%), Query Frame = 1
Query:    1 QVTTTRNVTSTPFVDWFCGGLQFQVDHHLFPQIPRHNLKKVHTLVESFCKEHGVRYHEATMFEGTKEVLAHLGEVSSAFISEFPAM 258
            QVTTTRNV+   FVDWFCGGLQ+QVDHHLFP IPRHNLKKVH LV +FC+E+GV YHEA+M  GT EVL HL EVS AFI EFPAM
Sbjct:  384 QVTTTRNVSPNLFVDWFCGGLQYQVDHHLFPSIPRHNLKKVHALVAAFCRENGVAYHEASMLAGTGEVLGHLKEVSEAFIHEFPAM 469          
BLAST of mRNA_S-dermatodea_contig11880.1181.1 vs. uniprot
Match: A0A6V1P576_HETAK (Hypothetical protein n=2 Tax=Sar TaxID=2698737 RepID=A0A6V1P576_HETAK)

HSP 1 Score: 138 bits (347), Expect = 6.080e-37
Identity = 63/86 (73.26%), Postives = 69/86 (80.23%), Query Frame = 1
Query:    1 QVTTTRNVTSTPFVDWFCGGLQFQVDHHLFPQIPRHNLKKVHTLVESFCKEHGVRYHEATMFEGTKEVLAHLGEVSSAFISEFPAM 258
            QVTTTRN+TS  FVDWFCGGLQ+QVDHHLFP IPRHNLKK H LV  FCKEH V YHE  M+ GTKEVL+ L  VS+ F +EFPAM
Sbjct:  385 QVTTTRNITSNWFVDWFCGGLQYQVDHHLFPMIPRHNLKKTHQLVTGFCKEHSVTYHETNMWVGTKEVLSFLNNVSTEFFTEFPAM 470          
BLAST of mRNA_S-dermatodea_contig11880.1181.1 vs. uniprot
Match: A0A835YIW8_9STRA (Delta-6 fatty acid desaturase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIW8_9STRA)

HSP 1 Score: 135 bits (341), Expect = 4.620e-36
Identity = 63/86 (73.26%), Postives = 70/86 (81.40%), Query Frame = 1
Query:    1 QVTTTRNVTSTPFVDWFCGGLQFQVDHHLFPQIPRHNLKKVHTLVESFCKEHGVRYHEATMFEGTKEVLAHLGEVSSAFISEFPAM 258
            QVTTTRNV+   FVDWFCGGLQ+QVDHHLFP IPRHNL KVH  V +FCKE+GV YHEA+M  GT EVL+HL  VS+ FI EFPAM
Sbjct:  387 QVTTTRNVSPNLFVDWFCGGLQYQVDHHLFPSIPRHNLPKVHAAVAAFCKENGVEYHEASMLAGTVEVLSHLKGVSTQFIGEFPAM 472          
BLAST of mRNA_S-dermatodea_contig11880.1181.1 vs. uniprot
Match: A0A1S7C7Q7_9STRA (Delta-6 fatty acid desaturase n=2 Tax=Nannochloropsis TaxID=5748 RepID=A0A1S7C7Q7_9STRA)

HSP 1 Score: 135 bits (340), Expect = 6.620e-36
Identity = 60/86 (69.77%), Postives = 70/86 (81.40%), Query Frame = 1
Query:    1 QVTTTRNVTSTPFVDWFCGGLQFQVDHHLFPQIPRHNLKKVHTLVESFCKEHGVRYHEATMFEGTKEVLAHLGEVSSAFISEFPAM 258
            QVTTTRNVT +  V WFCGGL +QVDHHLFP IPRH L K+H LVE FCK+HGV+YHE  M+EGTKEVLAHL  V+  F+++FPAM
Sbjct:  389 QVTTTRNVTGSWLVQWFCGGLGYQVDHHLFPMIPRHRLGKLHGLVEGFCKDHGVKYHETNMWEGTKEVLAHLSSVTKEFVADFPAM 474          
BLAST of mRNA_S-dermatodea_contig11880.1181.1 vs. uniprot
Match: Q49S39_9STRA (Fatty acid desaturase n=1 Tax=Glossomastix chrysoplasta TaxID=172669 RepID=Q49S39_9STRA)

HSP 1 Score: 134 bits (336), Expect = 2.230e-35
Identity = 57/86 (66.28%), Postives = 71/86 (82.56%), Query Frame = 1
Query:    1 QVTTTRNVTSTPFVDWFCGGLQFQVDHHLFPQIPRHNLKKVHTLVESFCKEHGVRYHEATMFEGTKEVLAHLGEVSSAFISEFPAM 258
            QVTTTRN+T +PFV WFCGGLQFQV+HHLFP +PRHNL + H +V +FCKE GV+YHEA +  GTKE+L+ L EV++ F+ EFPAM
Sbjct:  380 QVTTTRNITGSPFVHWFCGGLQFQVEHHLFPSLPRHNLPRAHEIVTAFCKEQGVKYHEADLLTGTKEILSCLSEVTTEFLDEFPAM 465          
BLAST of mRNA_S-dermatodea_contig11880.1181.1 vs. uniprot
Match: A0A7S1Y960_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1Y960_9STRA)

HSP 1 Score: 124 bits (310), Expect = 5.070e-35
Identity = 59/88 (67.05%), Postives = 66/88 (75.00%), Query Frame = 1
Query:    1 QVTTTRNVTS-----TPFVDWFCGGLQFQVDHHLFPQIPRHNLKKVHTLVESFCKEHGVRYHEATMFEGTKEVLAHLGEVSSAFISEF 249
            QVTTTRNVT        FVDWFCGGLQ+QVDHHLFP +PRH+LKK H LV SFCKE GV+YHEA M +GT EVL HL  VS  F+ +F
Sbjct:   11 QVTTTRNVTGGHGIPQAFVDWFCGGLQYQVDHHLFPTLPRHSLKKAHALVASFCKEWGVKYHEADMVDGTMEVLQHLKSVSDEFVIDF 98          
BLAST of mRNA_S-dermatodea_contig11880.1181.1 vs. uniprot
Match: A0A4D9CU91_9STRA (Cytochrome b5 heme-binding domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CU91_9STRA)

HSP 1 Score: 132 bits (333), Expect = 6.870e-35
Identity = 59/86 (68.60%), Postives = 70/86 (81.40%), Query Frame = 1
Query:    1 QVTTTRNVTSTPFVDWFCGGLQFQVDHHLFPQIPRHNLKKVHTLVESFCKEHGVRYHEATMFEGTKEVLAHLGEVSSAFISEFPAM 258
            QVTTTRNVT    + WFCGGL +QVDHHLFP IPRH L ++H LVESFCKEHGV+YHE +M+EGT EVLAHL  V+  F+++FPAM
Sbjct:  390 QVTTTRNVTGGWLIQWFCGGLGYQVDHHLFPMIPRHRLGQLHGLVESFCKEHGVKYHETSMWEGTLEVLAHLASVTKEFVTDFPAM 475          
BLAST of mRNA_S-dermatodea_contig11880.1181.1 vs. uniprot
Match: A0A7S3DR72_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DR72_9STRA)

HSP 1 Score: 129 bits (324), Expect = 1.340e-33
Identity = 61/88 (69.32%), Postives = 68/88 (77.27%), Query Frame = 1
Query:    1 QVTTTRNVTS-----TPFVDWFCGGLQFQVDHHLFPQIPRHNLKKVHTLVESFCKEHGVRYHEATMFEGTKEVLAHLGEVSSAFISEF 249
            QVTTTRN+T        FVDWFCGGLQ+QVDHHLFP +PRHNLKK H LVESFCKE GV+YHEA + EGT EVL HL  VS+ F+ EF
Sbjct:  380 QVTTTRNITGGHGFPQAFVDWFCGGLQYQVDHHLFPSLPRHNLKKTHALVESFCKEWGVKYHEADLVEGTFEVLDHLNNVSNEFVLEF 467          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11880.1181.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JB93_9PHAE4.470e-4684.88Cytochrome b5 heme-binding domain-containing prote... [more]
A0A812UH41_SYMMI1.190e-3974.42Hypothetical protein n=1 Tax=Symbiodinium microadr... [more]
A0A835YVN5_9STRA2.120e-3876.74Delta-6 desaturase n=1 Tax=Tribonema minus TaxID=3... [more]
A0A6V1P576_HETAK6.080e-3773.26Hypothetical protein n=2 Tax=Sar TaxID=2698737 Rep... [more]
A0A835YIW8_9STRA4.620e-3673.26Delta-6 fatty acid desaturase n=1 Tax=Tribonema mi... [more]
A0A1S7C7Q7_9STRA6.620e-3669.77Delta-6 fatty acid desaturase n=2 Tax=Nannochlorop... [more]
Q49S39_9STRA2.230e-3566.28Fatty acid desaturase n=1 Tax=Glossomastix chrysop... [more]
A0A7S1Y960_9STRA5.070e-3567.05Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A4D9CU91_9STRA6.870e-3568.60Cytochrome b5 heme-binding domain-containing prote... [more]
A0A7S3DR72_9STRA1.340e-3369.32Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11880contigS-dermatodea_contig11880:6827..7087 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score162.9
Seed ortholog evalue6.6e-38
Seed eggNOG ortholog2880.D8LQU3
KEGG koko:K21737
EggNOG free text desc.unsaturated fatty acid biosynthetic process
EggNOG OGsCOG3239@1,KOG4232@2759
EC1.14.19.38,1.14.19.47
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Hectar predicted targeting categoryother localisation
Exons1
Model size261
Cds size261
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924221.3307884-CDS-S-dermatodea_contig11880:6826..70871622924221.3307884-CDS-S-dermatodea_contig11880:6826..7087Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11880 6827..7087 -
1694079103.2370481-CDS-S-dermatodea_contig11880:6826..70871694079103.2370481-CDS-S-dermatodea_contig11880:6826..7087Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11880 6827..7087 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11880.1181.1prot_S-dermatodea_contig11880.1181.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11880 6827..7087 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11880.1181.1

>prot_S-dermatodea_contig11880.1181.1 ID=prot_S-dermatodea_contig11880.1181.1|Name=mRNA_S-dermatodea_contig11880.1181.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=87bp
QVTTTRNVTSTPFVDWFCGGLQFQVDHHLFPQIPRHNLKKVHTLVESFCK
EHGVRYHEATMFEGTKEVLAHLGEVSSAFISEFPAM*
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mRNA from alignment at S-dermatodea_contig11880:6827..7087-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11880.1181.1 ID=mRNA_S-dermatodea_contig11880.1181.1|Name=mRNA_S-dermatodea_contig11880.1181.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=261bp|location=Sequence derived from alignment at S-dermatodea_contig11880:6827..7087- (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGTGACCACCACGCGCAACGTCACGAGCACGCCGTTCGTCGACTGGTT CTGCGGCGGCCTCCAGTTCCAGGTGGACCACCACCTCTTCCCGCAGATCC CACGCCACAACCTTAAGAAGGTGCACACCCTCGTCGAGTCCTTCTGCAAG GAGCACGGGGTGCGGTACCACGAGGCCACGATGTTCGAGGGGACAAAGGA GGTTCTCGCACACCTCGGAGAGGTCTCCTCCGCATTTATCTCGGAGTTCC CGGCCATGTAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig11880:6827..7087-

>mRNA_S-dermatodea_contig11880.1181.1 ID=mRNA_S-dermatodea_contig11880.1181.1|Name=mRNA_S-dermatodea_contig11880.1181.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=522bp|location=Sequence derived from alignment at S-dermatodea_contig11880:6827..7087- (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGTGACCACCACGCGCAACGTCACGAGCACGCCGTTCGTCGACTGGTT
CTGCGGCGGCCTCCAGTTCCAGGTGGACCACCACCTCTTCCCGCAGATCC
CACGCCACAACCTTAAGAAGGTGCACACCCTCGTCGAGTCCTTCTGCAAG
GAGCACGGGGTGCGGTACCACGAGGCCACGATGTTCGAGGGGACAAAGGA
GGTTCTCGCACACCTCGGAGAGGTCTCCTCCGCATTTATCTCGGAGTTCC
CGGCCATGTAGCAGGTGACCACCACGCGCAACGTCACGAGCACGCCGTTC
GTCGACTGGTTCTGCGGCGGCCTCCAGTTCCAGGTGGACCACCACCTCTT
CCCGCAGATCCCACGCCACAACCTTAAGAAGGTGCACACCCTCGTCGAGT
CCTTCTGCAAGGAGCACGGGGTGCGGTACCACGAGGCCACGATGTTCGAG
GGGACAAAGGAGGTTCTCGCACACCTCGGAGAGGTCTCCTCCGCATTTAT
CTCGGAGTTCCCGGCCATGTAG
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