mRNA_S-dermatodea_contig1187.1174.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1187.1174.1
Unique NamemRNA_S-dermatodea_contig1187.1174.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig1187.1174.1 vs. uniprot
Match: D8LSM3_ECTSI (Co-chaperone grpE family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSM3_ECTSI)

HSP 1 Score: 265 bits (678), Expect = 1.460e-82
Identity = 174/278 (62.59%), Postives = 203/278 (73.02%), Query Frame = 1 
Query:    1 PAALPTLKVRGRGMLARMAAE-SEEAVAEKGDSVDGESIPEAEVVGEQESDDVEAEDGGD---EVVAEAEEGKXXXXXXXXXXXXXXXXXXXXXXXXXXVDPMAEVKQQIKDLERELQKTENTLADVRDTIEEKGQMGFLRMAAKVENFRKSSGSGSGEYEADAKAAVLKAMLPAFAPFEEAEETLTLETENETKFNGNYQALYRQLKAVFTKLGATDFFGVVEEKYEMRRHQKVSEQHDPVIPAGCILECLSPGLELKKNIIRKADCVVSLGPEKVE 822
            P AL T   R RG+   MAAE SE++VAE            +   GE+  +D EA  GGD   EVVAE  EGK   XXXXXXXXX              VDPMAEVKQQIKDLE+EL K EN L DV+D+++EKGQMGFLRMAA+V+NFRKSSG+G+G+YEADAKAAVL+AMLPAF PFE AEE L L TE E K+N +YQALYRQLK VFTK+GATDFFGVV EK+   RH+K SE+H+PV+  G I++C+SPGLELKKN+IRKA CVVSLGPEK E
Sbjct:   24 PGALRTSGYRERGVHLMMAAEPSEDSVAEAXXXXXXXXXXXSISEGEEAVED-EASGGGDVETEVVAEEGEGKEGEXXXXXXXXX--------------VDPMAEVKQQIKDLEKELMKEENRLRDVQDSVQEKGQMGFLRMAAQVDNFRKSSGAGTGDYEADAKAAVLRAMLPAFEPFEAAEEALNLATETEVKYNKSYQALYRQLKDVFTKIGATDFFGVVGEKFVYTRHEKASEEHNPVMKEGLIIKCVSPGLELKKNVIRKAVCVVSLGPEKEE 286
[Close]
BLAST of mRNA_S-dermatodea_contig1187.1174.1 vs. uniprot
Match: A0A6H5KMN5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMN5_9PHAE)

HSP 1 Score: 231 bits (589), Expect = 6.380e-71
Identity = 116/160 (72.50%), Postives = 139/160 (86.88%), Query Frame = 1 
Query:  343 KTENTLADVRDTIEEKGQMGFLRMAAKVENFRKSSGSGSGEYEADAKAAVLKAMLPAFAPFEEAEETLTLETENETKFNGNYQALYRQLKAVFTKLGATDFFGVVEEKYEMRRHQKVSEQHDPVIPAGCILECLSPGLELKKNIIRKADCVVSLGPEKVE 822
            K EN L DV+D+++EKGQMGFLRMAA+V+NFRKSSG+G+G+YEADAKAAVL+AMLPAF PFE AEE L LETE E K+N +YQALYRQLK VFTK+GATDFFGVV EK+   RH+K SE+++PV+  G I++C+SPGLELKKN+IRKA CVVSLGPEK E
Sbjct:    2 KEENRLRDVQDSVQEKGQMGFLRMAAQVDNFRKSSGAGTGDYEADAKAAVLRAMLPAFEPFEAAEEALNLETETEVKYNKSYQALYRQLKDVFTKVGATDFFGVVGEKFVYTRHEKASEEYNPVMKEGLIIKCVSPGLELKKNVIRKAVCVVSLGPEKKE 161
[Close]
BLAST of mRNA_S-dermatodea_contig1187.1174.1 vs. uniprot
Match: A0A835ZD01_9STRA (GrpE-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD01_9STRA)

HSP 1 Score: 119 bits (299), Expect = 9.620e-28
Identity = 70/132 (53.03%), Postives = 83/132 (62.88%), Query Frame = 1 
Query:  430 NFRKSSGSGSGEYEADAKAAVLKAMLPAFAPFE---EAEETLTLETENETKFNGNYQALYRQLKAVFTKLGATDFFGVVEEKYEMRRHQKVSEQHDPVIPAGCILECLSPGLELKKNIIRKADCVVSLGPEK 816
            N+RK       + +A+A A VL++  P    FE   + E  L LETE E  FN NYQALYRQL  V+TKLG TDFFGV  E Y+  RH+KV EQH   I AG +LECL+ G EL   +IRKA  V SLGPEK
Sbjct:   93 NYRKRRNLDQKKLQAEAMARVLRSFEPVLEAFEAVVDGETDLKLETEQEQMFNSNYQALYRQLADVYTKLGVTDFFGVQGETYDGIRHEKVGEQHAD-IRAGAVLECLAKGNELSGGVIRKAKVVTSLGPEK 223
[Close]
BLAST of mRNA_S-dermatodea_contig1187.1174.1 vs. uniprot
Match: A0A1Z5KL04_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KL04_FISSO)

HSP 1 Score: 90.1 bits (222), Expect = 8.950e-17
Identity = 60/181 (33.15%), Postives = 93/181 (51.38%), Query Frame = 1 
Query:  289 DP-MAEVKQQIKDLERELQKTENTLADVRDTIEEKGQMGFLRMAAKVENFRKSSGSGSGEYEADAKAAVLKAMLPAFAPFEEAEETLTLETENETKFNGNYQALYRQLKAVFTKLGATDFFGVVEEKYEMRRHQKVSEQHDPVIPAGCILECLSPGLELKKNIIRKADCVVSLGPEKVEEE 828
            DP +  +K++I  LE E+++    +    +  +E  Q G+ R  A++EN R++    +    + + AA+L   LP      E  E        E  F   Y AL   L A F+ +G  DF   V EK +  R   V+E+H   +PAG ++  +S GL+L+ N+IR A+CVVSLGPE   +E
Sbjct:   81 DPELVALKEEIAKLEAEVKEKRRQVEYTSEQADEYSQAGYARKVAEMENMRRARSMLNTSNRSTSTAALLTKFLPTMDKLNELREKY-----GEDSFGKQYNALPGTLMAGFSAMGVADFSVTVGEKMDAERMVAVAEEHSVELPAGTVIREVSSGLQLEGNVIRMAECVVSLGPESNSDE 256
[Close]
BLAST of mRNA_S-dermatodea_contig1187.1174.1 vs. uniprot
Match: A0A7S0FMV1_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FMV1_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 1.080e-13
Identity = 55/181 (30.39%), Postives = 92/181 (50.83%), Query Frame = 1 
Query:  304 VKQQIKDLERELQKTENTLADVRDTIEEKGQMGFLRMAAKVENFRKSSGSGSGEYEADAKAAVLKAMLPAFAPFEEAEETLTLETENETKFNGNYQALYRQLKAVFTKLGATDFFGVVEEKYEMRRHQKVSEQHDPVIPAGCILECLSPGLELKKNIIRKADCVVSLGPEKVEEEVESEAA 846
            +K++I  LE +++   N LA + D++E   + G+ R  A+++   K  G+ S   E+ AKA +L+  LP     +  +E    +      F  +Y+AL   L    T LG +++   V    +  R   V EQ+      G ++  ++ GLEL+ N++R A+CVVSLG E   +  E EAA
Sbjct:  105 IKEEIAALEAKIKSRRNDLASIIDSVETYSKAGYARKVAEMDQISKMRGAASKSNESTAKATILQDFLPVLDELKALDEKYAGDD-----FAQSYKALRWDLNNAMTALGMSEYTAEVGATADRTRVVAVEEQYSDDFAKGAVISPVAVGLELQGNVMRMAECVVSLGSEADSKAAEEEAA 280
[Close]
BLAST of mRNA_S-dermatodea_contig1187.1174.1 vs. uniprot
Match: A0A7S2LF94_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LF94_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 2.720e-13
Identity = 61/189 (32.28%), Postives = 98/189 (51.85%), Query Frame = 1 
Query:  289 DP-MAEVKQQIKDLERELQKTENTLADVRDTIEEKGQMGFLRMAAKVENFRKSSGSGSGEYEADAKAAVLKAMLPAFAPFEEAEETLTLETENETKFNGNYQALYRQLKAVFT-KLGATDFFGVVEEKYEMRRHQKVSEQHDPVIPAGCILECLSPGLELKKNIIRKADCVVSLGPEKVEEEVESEAAG 849
            DP M  +K++I  LE  L+     L+ V D  E   + G++R  A+++N+RK S   S      ++AAV++  LP        EE   LE + E      Y+AL   L+ V   KL  +++   V +++   R+  V+E+    +  GCI+  +SPGLE+K N++R AD + S G E  E+   +EA G
Sbjct:  105 DPEMVALKEEISKLEATLRSKRAALSGVLDEAELYTETGYMRTLAEMDNYRKRSEISSQNNRYSSRAAVVRQFLPIL------EELEMLERQYE---GSAYKALRWDLQNVLQEKLDMSEYHAEVGDEFSYIRYNAVAEEFSEEVAKGCIIRQISPGLEIKGNVLRAADVIKSKGSEAAEQSEAAEAEG 284
[Close]
BLAST of mRNA_S-dermatodea_contig1187.1174.1 vs. uniprot
Match: A0A7S2HPZ2_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HPZ2_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 5.170e-9
Identity = 55/180 (30.56%), Postives = 88/180 (48.89%), Query Frame = 1 
Query:  289 DP-MAEVKQQIKDLERELQKT---ENTLADVRDTIEEKGQMGFLRMAAKVENFRKSSGSGSGEYEADAKAAVLKAMLPAFAPFEEAEETLTLETENETKFNGNYQALYRQLKAVFTKLGATDFFGVVEEKYEMRRHQKVSEQHDPVIPAGCILECLSPGLELKKNIIRKADCVVSLGPEK 816
            DP +  +K++I  LE++L +    +NTL  + D   E G   + R  A++EN RK       + ++ AKA+V+++ LP       A+ET        + F  NY AL         +L  T++   V  K +  R     E +        I++ LS G E+K N++R A+CVVSLG E+
Sbjct:    3 DPEVTSLKEEIASLEKKLSEKRLEKNTLDRLVDNYSENG---YARKVAEMENVRKLRSLAFIDNKSTAKASVVQSFLPVLDALTAADETYA-----SSPFTSNYSALRGNFNTALKELDVTEYTVDVGSKVDKSRVLVKEELYSDDYEKDVIVKPLSVGYEIKGNVMRMAECVVSLGSEQ 174
[Close]
BLAST of mRNA_S-dermatodea_contig1187.1174.1 vs. uniprot
Match: A0A7S1ZBM0_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZBM0_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 4.370e-8
Identity = 57/187 (30.48%), Postives = 88/187 (47.06%), Query Frame = 1 
Query:  304 VKQQIKDLERELQKT---ENTLADVRDTIEEKGQMGFLRMAAKVENFRKSSGSGSGEYEADAKAAVLKAMLPAFAPFEEAEETLTLETENETKFNGNYQALYRQLKAVFTKLGATDFFGVVEEKYEMRRHQKVSEQHDPVIPAGCILECLSPGLELKKNIIRKADCVVSLGPEKVEEEVESEAAGET 855
            +K +I  LE++L +    +NTL  + D   E G   + R  A++EN RK       + +  AKA+++++ LP       A+ T           N  Y AL   ++    +L   ++   V    + RR     E +        ++  +S GLELK N+IR A+CVVSLG E     VE EAAGE+
Sbjct:   11 LKDEIASLEKKLSEKRLEKNTLDRLIDNYSEGG---YARKVAEMENVRKMRSLAFIDNKFTAKASIVQSFLPVMDALAAADNTYA------DSDNNKYTALSGNMRTALKELDVEEYTVEVGSIVDKRRVSISEEVYSDQYEKDVVISPVSVGLELKGNVIRLAECVVSLGSEAAAA-VEEEAAGES 187
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1187.1174.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D8LSM3_ECTSI1.460e-8262.59Co-chaperone grpE family protein n=1 Tax=Ectocarpu... [more]
A0A6H5KMN5_9PHAE6.380e-7172.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZD01_9STRA9.620e-2853.03GrpE-domain-containing protein n=1 Tax=Tribonema m... [more]
A0A1Z5KL04_FISSO8.950e-1733.15Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A0A7S0FMV1_9STRA1.080e-1330.39Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A7S2LF94_9STRA2.720e-1332.28Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S2HPZ2_9STRA5.170e-930.56Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S1ZBM0_9STRA4.370e-830.48Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1187contigS-dermatodea_contig1187:11763..16822 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score268.1
Seed ortholog evalue5.5e-69
Seed eggNOG ortholog2880.D8LSM3
Preferred namemge1
KEGG koko:K03687
GOsGO:0000166,GO:0000774,GO:0001405,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005744,GO:0005759,GO:0006457,GO:0006605,GO:0006626,GO:0006790,GO:0006810,GO:0006839,GO:0006886,GO:0006996,GO:0007005,GO:0008104,GO:0008150,GO:0008152,GO:0009987,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016226,GO:0017038,GO:0017076,GO:0019866,GO:0022607,GO:0030150,GO:0030234,GO:0030554,GO:0031090,GO:0031163,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0036094,GO:0042026,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044085,GO:0044237,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044571,GO:0044743,GO:0045184,GO:0046907,GO:0050790,GO:0051082,GO:0051179,GO:0051186,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0060589,GO:0060590,GO:0065002,GO:0065007,GO:0065009,GO:0070013,GO:0070585,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0072594,GO:0072655,GO:0097159,GO:0098772,GO:0098796,GO:0098798,GO:0098800,GO:1901265,GO:1901363,GO:1990542
EggNOG free text desc.adenyl-nucleotide exchange factor activity
EggNOG OGsCOG0576@1,KOG3003@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029,ko03110
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionco-chaperone grpE family protein
Ec32 orthologEc-09_002170.1
Exons4
Model size1243
Cds size987
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1187.1174.1prot_S-dermatodea_contig1187.1174.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1187 11980..16783 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924220.591381-UTR-S-dermatodea_contig1187:11762..119791622924220.591381-UTR-S-dermatodea_contig1187:11762..11979Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1187 11763..11979 -
1694079102.6366441-UTR-S-dermatodea_contig1187:11762..119791694079102.6366441-UTR-S-dermatodea_contig1187:11762..11979Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1187 11763..11979 -
1622924220.6535435-UTR-S-dermatodea_contig1187:16783..168221622924220.6535435-UTR-S-dermatodea_contig1187:16783..16822Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1187 16784..16822 -
1694079102.683855-UTR-S-dermatodea_contig1187:16783..168221694079102.683855-UTR-S-dermatodea_contig1187:16783..16822Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1187 16784..16822 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924220.608661-CDS-S-dermatodea_contig1187:11979..123151622924220.608661-CDS-S-dermatodea_contig1187:11979..12315Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1187 11980..12315 -
1694079102.6471565-CDS-S-dermatodea_contig1187:11979..123151694079102.6471565-CDS-S-dermatodea_contig1187:11979..12315Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1187 11980..12315 -
1622924220.6260846-CDS-S-dermatodea_contig1187:13573..137231622924220.6260846-CDS-S-dermatodea_contig1187:13573..13723Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1187 13574..13723 -
1694079102.6556249-CDS-S-dermatodea_contig1187:13573..137231694079102.6556249-CDS-S-dermatodea_contig1187:13573..13723Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1187 13574..13723 -
1622924220.6356168-CDS-S-dermatodea_contig1187:14661..148801622924220.6356168-CDS-S-dermatodea_contig1187:14661..14880Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1187 14662..14880 -
1694079102.664525-CDS-S-dermatodea_contig1187:14661..148801694079102.664525-CDS-S-dermatodea_contig1187:14661..14880Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1187 14662..14880 -
1622924220.6450486-CDS-S-dermatodea_contig1187:16501..167831622924220.6450486-CDS-S-dermatodea_contig1187:16501..16783Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1187 16502..16783 -
1694079102.6738315-CDS-S-dermatodea_contig1187:16501..167831694079102.6738315-CDS-S-dermatodea_contig1187:16501..16783Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1187 16502..16783 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1187.1174.1

>prot_S-dermatodea_contig1187.1174.1 ID=prot_S-dermatodea_contig1187.1174.1|Name=mRNA_S-dermatodea_contig1187.1174.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=329bp
MLARMAAESEEAVAEKGDSVDGESIPEAEVVGEQESDDVEAEDGGDEVVA
EAEEGKGEADEGEAEEAEAEEEEEEEEEEEEEVDPMAEVKQQIKDLEREL
QKTENTLADVRDTIEEKGQMGFLRMAAKVENFRKSSGSGSGEYEADAKAA
VLKAMLPAFAPFEEAEETLTLETENETKFNGNYQALYRQLKAVFTKLGAT
DFFGVVEEKYEMRRHQKVSEQHDPVIPAGCILECLSPGLELKKNIIRKAD
CVVSLGPEKVEEEVESEAAGETEEGATVEAGALRDAGDVGDGEAGVEEED
GAEEVEGAEETPAGEEPEPAGEEPEPAA*
back to top

mRNA from alignment at S-dermatodea_contig1187:11763..16822-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1187.1174.1 ID=mRNA_S-dermatodea_contig1187.1174.1|Name=mRNA_S-dermatodea_contig1187.1174.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5060bp|location=Sequence derived from alignment at S-dermatodea_contig1187:11763..16822- (Saccorhiza dermatodea SderLu1190fm monoicous)
CCAGCCGCGCTTCCCACCCTTAAGGTGAGGGGGCGAGGGATGCTCGCGAG
GATGGCGGCAGAGTCGGAGGAGGCTGTCGCCGAGAAGGGCGACTCGGTCG
ACGGGGAATCCATCCCAGAAGCCGAGGTGGTGGGAGAGCAGGAGAGCGAC
GACGTGGAGGCCGAGGATGGCGGGGATGAGGTAGTTGCGGAGGCCGAGGA
AGGAAAGGGGGAGGCGGATGAGGGGGAGGCGGAGGAGGCAGAGGCAGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGAGGTGGACCCGATGGCT
GAGGTTAAGCAGCAGATCAAGGTGTGTGTGTGTTTGTGTGTCTGCGTGTG
ACTGCGAGAGAGGCCCCTGACACATGAACGTCGCACGAGCAAGGAGTTAT
GGTATATTCAACGCACAGCAGCGCGCGCTCTCCGGCGCAGCGCAGCGGTG
TTGCCTCGGAGAGGCTGTAGAGGCCGTATCCCGCGAGTCTTGTGCACCAG
TTGTTGGCGGGGTGTGCCCTCAGAGTATTGTTTTTGCAGCTTGCGCGATG
ATTCCGTTGGTGTTCCAGTCAGCATCGACGAAGGAAAATGTGCGGTGTTC
TGGAAGGTGATGAGTGGTTGATCTCAGATATCGATCCGATTTCCCCTCCT
TGGCTTTCATGTCTCTTGCAGGCTTGCAGGAAGCAGCAGCCAATGCCGAA
GGCACGTACATGTTCATATGTTTCTTCATGAAGAGTTATACTACAGCTGT
AGAGCTCTACAACTGAGTACTTTATGTATAGAGCTCTAATATCATAGTAT
TAATAGTATCAAAGCAGTATGCACAGGATATGCCATGATGTTGCATTGCC
GATGGACCGGTTGCGCAATCTGATGGTTTCCACAAATCATGCAACGGAGG
TATTCGCTACAAAAAAAGTACCAGGTACTGGTATCGGTACCTGGTATCAT
GGTATGTACTGCAAAGTTACAGAAAAGTGTTAAAGAGCAGTACAAACGTA
CTGGTATTATAATTGTGTTTACTGCTTGTACCGTATGCACGACAACGCTT
GTATCACCCACCCACCTGGTTCACACCCTATAGCCGTAGATACATTTGGC
CATTCTTGCCAACAGCCTAAACCGATGGGCTTTGGCACCAGCAGCAGCAG
CGCCAAGAGCCTCCGAGCGTATTGCTGCAGAGGCCTCTCAGTCACGATAT
ATTTGCGCGTGTGGCCACCTAAAACAGATGCAAACACCCCGCCCAAGGGA
AAGCTCGAGCCTTGCCCAGCCCCGCTCGGATACGCATGCGTATTTGCCAT
CATCCGCCCCGGGGAGCCTCCTACACGCTAGAGAACCGTCAAGTACTTTG
AACAAGAACCCAGCCTTCGGACGTTTCGTGTTTTGGTGCACGGCGACCCA
GGTCCCATAAAGAGCGTCCTGCGGCGTTGTAGACATCCCCGGAGCCGCAT
CCAACCTTTGCCTTATCTTGAGTTATTTAGTAAATCAACGGGCTATATTC
AAGTTGCCGCCTCAACTCCACAGCCAAAGGGCGTTCGTGCGCAGCTCCCC
CAAGGATGACGATGATGGCAACTGGTACAATCCTTGTGACACGCAGCCTG
GCCGGCGGCAATACGGCTTACCGCTCCATCCCTGCGATGTTGGGATACGT
TATGTTTGTCCGTTTAGATTACGACATGCGTTAACCACAAGTACCCGGGT
GTACATAAAGTAGGAAACAATAGTTTTTACCACCTTTGGCAAAGTATCAT
TGGAACTAGCACTTGCCCACTTGCCGATCGGCAATTGATTCTGTGGGAAC
AGCGTTCCGTCCTACCGAGGACGCGAGGTCATTAGACTGACAACTTCGGC
ATGCAAAACTTGAGTACGCACCCCTCATGCACCCCCCCCTCTGCGGCTAC
CGCTTCACGCGATACGGCGTTGCACGCGCGCTCGCTTTGCAGGACCTCGA
AAGAGAGCTGCAGAAAACGGAGAACACGCTCGCCGACGTACGCGACACGA
TAGAGGAGAAGGGACAGATGGGATTCCTTCGGATGGCGGCCAAGGTTGAA
AATTTCCGGAAGAGCAGCGGGTCGGGATCGGGGGAGTATGAGGCGGACGC
GAAGGCGGCGGTGCTGAAGGCGATGCTACCGGCGTTCGCGCCTTTCGAGG
AAGCCGAGGAGGTGAGGGGATGTTTTGATTCGATGTGATTTATCGTGTTG
TCATCGTGATACTGTGCATAGGTACGTTTTTATGTAGCAACGGAATCGAA
TTCGGATACTGTACAAGTACCGCTATAGGAGTTGTTTTTTTCTTTGTTTT
TTCTGCTCTGCCGCCGAAAAGCGCGAGGCGCCGCCGAGAAAAGCTCTAAA
TGCGCGCGCGCGCGCGCGAGCAAGCACACCCAAAATGGCAATCCTTCGAG
AGAGCTGGCTGTCGGGGTGCTAACTGGATGAACCTAAACGCGCGATTAAA
GTCGAAGCGCAGTACATACCGGGAAGAGAGGGGTGGGAGAATCGACCCGT
CGTGACCACAGACGGGATGGTCGCTACATGACAGGCTATAGAATATGGCC
GGTCGTCAGAAGTGAGAAACGTTGAGATGCGTCGGCTGTTGTTACCGTGA
GAGTGGGAACCAACGGCCATTACGTCCGGGCGTGGCACGGGTTTGTTGCT
GTTTTATGTATACCTGGCGCGGTTGATGCAAACGTGCGGGGTAAGCGGTG
GGACCGACGATCGATCGAGCGAGCGGGGTGCCTGCCACAAGAAGCAGGGA
GGAATACTGTAGAGGGAATTGAAAAAGAAAGGCTTGATTTGTGGACACTT
TTATCGCGTGGGCAAGAGACTTTCCTCAACAGCATCGTAGGCGTACCGGT
GTTGATGAGGTACGCGGCTTTGTTTTCGTTTTCGTCTCCAAGTATCACAT
GATGCCCCCTGCCCTTGCGGATTCGGGGATTAACCATGCCGAACGAAGTC
CGAGGCTCCCTTGCCCCAAAAAATATCCCCGTCGAAAATCCTGCTCGGCG
CCGCCCCTTATCCCTCAACCCTCCCCCCCCCCCCCTCGCACTCCGTGGCG
GTATGTGTGTGTGTGTTACTTTTTTTTGGCGCACGCTCATCGGAAGCAGA
CGCTTACCCTGGAGACGGAGAACGAGACTAAGTTCAACGGCAACTACCAG
GCCCTGTACCGGCAGCTGAAGGCCGTTTTTACCAAGCTCGGAGCGACGGA
TTTCTTCGGTGTGGTTGAGGAGAAGTACGAGATGAGGAGACACCAGAAGG
TAAAAATACAAGCAAAGGCGAGAGCCGCCCAATCGTGGTTCGCGAATCGC
GACGGGGCGCGGTGTCGTGCTTGGTCGAGTTTCTCTTTTGCATCTTAGAT
GACTGCTTTGTATGCATTCACACCCGAGAAATCGGTGAGCTGTGGCAGCG
CTGAACCGAAAGCGCGACAAATATGTATGGCTAGTTTTCCCGGGGGAGAG
GTGGATTGGTCCTTCGTGACCGCAGCCGGGATTCGGATAAGTCCACTCAG
TCGTACGTGAGCCACACAACCGCGCTGCCACACAGTAGTCCAAGGTGGTC
AAGATCGACCTGCGGTGTGTATCAAGGTTGGTTTCATATGTAATTCGGCG
AATGAAAATTATTGACGGATATCAGATCCCTACGAGTAGCCCTCTCAACG
CCCGGCGCCAGCAAGCAGGAGCTATAATACCTCGCTTGCTTCGCTTCGAC
TTGGCCCTTGAGTTCGACCGAGCAGTTGAGAAATCGCGATCCGATCACCA
GGAGTTCATTCTGGTGTCTGGGATCGTTTATTTTGTGGGAACGGCTGTTG
CGGCGTCCAGCTCTGGCTGTAGCTCTTCTTTCGTGCGCCTGTGTCCCACT
GGAAAACCGCGGCCTGTAAAGGCAGTGCTCGGGTGTTCGCTGGTGGACTT
AACAGCTCGAGATGAGCACGCCTGTCTTCTGGAATATGAAACCATAGAAT
ACTCAACTTTTCGTGGTTCACGTCAGCGTGCTACGGCAAGGTGGCTGTGG
GATGGAATCTGCTCTAGGTCTAAAGCTCGACAGGAACAAAGAGTAGTCTC
GCAGGATAGGTGGCACCGGTCGTGGACAGAGCTATACTACATTCTACGAT
GCGTATGCCTTTTCAGTTCGTTAGCCTAGCTTTTTGCGATGATGGCCGGA
TGGGCGTTCCTTGGCGCGTCATCCAAGGGGGCAGGAAACAAACGTCCCCT
ATATTGCGTTTGTGTGTCACCAATATCCTTTTAAAGGCCACGACGCTGGC
CTACCAGCAAATCTTGGCGGAAGTGCGATAGAAAGGAGAGCCTGGCGATC
CCAACCATCGTATTTGAAGACGTAACCAAAGGCGAAAACACAGACTCAAT
GAGACTTTTGGATCCTTATACATGTATTTCGGCGTAACTTGCGGCCCACG
CGCAACCTCCCCAATTATGGTGATTTTTTACATGAGGCTTACCATCAACC
CCTCCCCCCCTTCTGCCCCCAACCATCATTTTTCGTCGTGGTTCGGACGT
GAAACAGGTGTCGGAGCAGCACGATCCCGTAATACCGGCGGGTTGCATCC
TCGAGTGCCTATCCCCGGGTCTCGAGCTCAAGAAGAACATCATCCGAAAA
GCCGATTGCGTCGTTTCCCTCGGTCCGGAGAAGGTGGAGGAAGAGGTTGA
GTCGGAGGCAGCAGGGGAAACCGAGGAAGGGGCTACAGTGGAGGCGGGAG
CGCTACGGGATGCCGGGGACGTCGGGGACGGGGAAGCGGGGGTGGAAGAG
GAGGACGGTGCAGAGGAGGTAGAGGGAGCGGAGGAGACGCCTGCCGGAGA
GGAGCCGGAGCCTGCCGGAGAGGAGCCGGAGCCTGCCGCATGAGTTTTCT
TTTGTTGGGCAGTGGTGTGTGCTTTGGCGGGAGTGCAAGACGTCATCGTC
GCCGTCCGTTGGTTCGTTCGTAACGGCGTCGCAGCGCCGCGCCGCGGCGA
CGAGCTTGTTGCAGGAGGGAACTCCGTTGTTTTTTTTTTACGAATTATAG
TTTTCGTTTGTTTCTGTACCTGTTTATTGGTTTTCTCGCCTTCGAGTAAT
CGTCGTTCAC
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig1187:11763..16822-

>mRNA_S-dermatodea_contig1187.1174.1 ID=mRNA_S-dermatodea_contig1187.1174.1|Name=mRNA_S-dermatodea_contig1187.1174.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1974bp|location=Sequence derived from alignment at S-dermatodea_contig1187:11763..16822- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCTCGCGAGGATGGCGGCAGAGTCGGAGGAGGCTGTCGCCGAGAAGGG
CGACTCGGTCGACGGGGAATCCATCCCAGAAGCCGAGGTGGTGGGAGAGC
AGGAGAGCGACGACGTGGAGGCCGAGGATGGCGGGGATGAGGTAGTTGCG
GAGGCCGAGGAAGGAAAGGGGGAGGCGGATGAGGGGGAGGCGGAGGAGGC
AGAGGCAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGAGGTGG
ACCCGATGGCTGAGGTTAAGCAGCAGATCAAGATGCTCGCGAGGATGGCG
GCAGAGTCGGAGGAGGCTGTCGCCGAGAAGGGCGACTCGGTCGACGGGGA
ATCCATCCCAGAAGCCGAGGTGGTGGGAGAGCAGGAGAGCGACGACGTGG
AGGCCGAGGATGGCGGGGATGAGGTAGTTGCGGAGGCCGAGGAAGGAAAG
GGGGAGGCGGATGAGGGGGAGGCGGAGGAGGCAGAGGCAGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAAGAGGAGGTGGACCCGATGGCTGAGGTTA
AGCAGCAGATCAAGGACCTCGAAAGAGAGCTGCAGAAAACGGAGAACACG
CTCGCCGACGTACGCGACACGATAGAGGAGAAGGGACAGATGGGATTCCT
TCGGATGGCGGCCAAGGTTGAAAATTTCCGGAAGAGCAGCGGGTCGGGAT
CGGGGGAGTATGAGGCGGACGCGAAGGCGGCGGTGCTGAAGGCGATGCTA
CCGGCGTTCGCGCCTTTCGAGGAAGCCGAGGAGGACCTCGAAAGAGAGCT
GCAGAAAACGGAGAACACGCTCGCCGACGTACGCGACACGATAGAGGAGA
AGGGACAGATGGGATTCCTTCGGATGGCGGCCAAGGTTGAAAATTTCCGG
AAGAGCAGCGGGTCGGGATCGGGGGAGTATGAGGCGGACGCGAAGGCGGC
GGTGCTGAAGGCGATGCTACCGGCGTTCGCGCCTTTCGAGGAAGCCGAGG
AGACGCTTACCCTGGAGACGGAGAACGAGACTAAGTTCAACGGCAACTAC
CAGGCCCTGTACCGGCAGCTGAAGGCCGTTTTTACCAAGCTCGGAGCGAC
GGATTTCTTCGGTGTGGTTGAGGAGAAGTACGAGATGAGGAGACACCAGA
AGACGCTTACCCTGGAGACGGAGAACGAGACTAAGTTCAACGGCAACTAC
CAGGCCCTGTACCGGCAGCTGAAGGCCGTTTTTACCAAGCTCGGAGCGAC
GGATTTCTTCGGTGTGGTTGAGGAGAAGTACGAGATGAGGAGACACCAGA
AGGTGTCGGAGCAGCACGATCCCGTAATACCGGCGGGTTGCATCCTCGAG
TGCCTATCCCCGGGTCTCGAGCTCAAGAAGAACATCATCCGAAAAGCCGA
TTGCGTCGTTTCCCTCGGTCCGGAGAAGGTGGAGGAAGAGGTTGAGTCGG
AGGCAGCAGGGGAAACCGAGGAAGGGGCTACAGTGGAGGCGGGAGCGCTA
CGGGATGCCGGGGACGTCGGGGACGGGGAAGCGGGGGTGGAAGAGGAGGA
CGGTGCAGAGGAGGTAGAGGGAGCGGAGGAGACGCCTGCCGGAGAGGAGC
CGGAGCCTGCCGGAGAGGAGCCGGAGCCTGCCGCATGAGTGTCGGAGCAG
CACGATCCCGTAATACCGGCGGGTTGCATCCTCGAGTGCCTATCCCCGGG
TCTCGAGCTCAAGAAGAACATCATCCGAAAAGCCGATTGCGTCGTTTCCC
TCGGTCCGGAGAAGGTGGAGGAAGAGGTTGAGTCGGAGGCAGCAGGGGAA
ACCGAGGAAGGGGCTACAGTGGAGGCGGGAGCGCTACGGGATGCCGGGGA
CGTCGGGGACGGGGAAGCGGGGGTGGAAGAGGAGGACGGTGCAGAGGAGG
TAGAGGGAGCGGAGGAGACGCCTGCCGGAGAGGAGCCGGAGCCTGCCGGA
GAGGAGCCGGAGCCTGCCGCATGA
back to top