mRNA_S-dermatodea_contig11864.1168.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11864.1168.1
Unique NamemRNA_S-dermatodea_contig11864.1168.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig11864.1168.1 vs. uniprot
Match: D8LNI9_ECTSI (Vesicle coat complex COPI, beta sub-unit (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNI9_ECTSI)

HSP 1 Score: 89.4 bits (220), Expect = 8.190e-21
Identity = 41/44 (93.18%), Postives = 42/44 (95.45%), Query Frame = 1 
Query:    1 PLRLEIKKKLSSRSDRVKSVDIHPTEPWVLSALYNGHVFIWDYE 132
            PLRLEIKK LSSRSDRVK VDIHPTEPWVLSALYNGHVFIWDY+
Sbjct:   27 PLRLEIKKLLSSRSDRVKCVDIHPTEPWVLSALYNGHVFIWDYQ 70
[Close]
BLAST of mRNA_S-dermatodea_contig11864.1168.1 vs. uniprot
Match: A0A6H5KKE9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKE9_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 8.050e-20
Identity = 38/42 (90.48%), Postives = 40/42 (95.24%), Query Frame = 1 
Query:    7 RLEIKKKLSSRSDRVKSVDIHPTEPWVLSALYNGHVFIWDYE 132
            +LEIKK LSSRSDRVK VDIHPTEPWVLSALYNGHVFIWDY+
Sbjct:   10 KLEIKKLLSSRSDRVKCVDIHPTEPWVLSALYNGHVFIWDYQ 51
[Close]
BLAST of mRNA_S-dermatodea_contig11864.1168.1 vs. uniprot
Match: A0A7S3XSS5_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XSS5_HETAK)

HSP 1 Score: 88.6 bits (218), Expect = 2.780e-19
Identity = 40/44 (90.91%), Postives = 44/44 (100.00%), Query Frame = 1 
Query:    1 PLRLEIKKKLSSRSDRVKSVDIHPTEPWVLSALYNGHVFIWDYE 132
            PLRLEIKKKLS+RSDRVKSV+IHPTEPWVL+ALYNG+VFIWDYE
Sbjct:    2 PLRLEIKKKLSARSDRVKSVEIHPTEPWVLAALYNGNVFIWDYE 45
[Close]
BLAST of mRNA_S-dermatodea_contig11864.1168.1 vs. uniprot
Match: A0A835YRX4_9STRA (Coatomer WD associated region-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRX4_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 9.660e-19
Identity = 39/44 (88.64%), Postives = 43/44 (97.73%), Query Frame = 1 
Query:    1 PLRLEIKKKLSSRSDRVKSVDIHPTEPWVLSALYNGHVFIWDYE 132
            PLRLEI+K LSSRSDRVKSVD+HPTEPWVL+ALYNG+VFIWDYE
Sbjct:    2 PLRLEIRKMLSSRSDRVKSVDLHPTEPWVLTALYNGNVFIWDYE 45
[Close]
BLAST of mRNA_S-dermatodea_contig11864.1168.1 vs. uniprot
Match: A0A448Z8R3_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z8R3_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 1.110e-18
Identity = 35/44 (79.55%), Postives = 42/44 (95.45%), Query Frame = 1 
Query:    1 PLRLEIKKKLSSRSDRVKSVDIHPTEPWVLSALYNGHVFIWDYE 132
            PLRL+IKKKLS+ S+RVKSVD+HPTEPWVL+ALY+G+V IWDYE
Sbjct:    2 PLRLDIKKKLSASSERVKSVDLHPTEPWVLAALYSGNVMIWDYE 45
[Close]
BLAST of mRNA_S-dermatodea_contig11864.1168.1 vs. uniprot
Match: A0A7S0NDK6_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0NDK6_9EUKA)

HSP 1 Score: 86.7 bits (213), Expect = 1.320e-18
Identity = 37/48 (77.08%), Postives = 44/48 (91.67%), Query Frame = 1 
Query:    1 PLRLEIKKKLSSRSDRVKSVDIHPTEPWVLSALYNGHVFIWDYEVRVV 144
            PLRL+IK+KLSSRSDRVKSVDIHP EPWVLSA+YNGHVF+W+Y  + +
Sbjct:    2 PLRLDIKRKLSSRSDRVKSVDIHPVEPWVLSAMYNGHVFLWNYNTQTL 49
[Close]
BLAST of mRNA_S-dermatodea_contig11864.1168.1 vs. uniprot
Match: D3BD99_POLPP (Coatomer subunit beta' n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3BD99_POLPP)

HSP 1 Score: 86.3 bits (212), Expect = 1.800e-18
Identity = 37/46 (80.43%), Postives = 45/46 (97.83%), Query Frame = 1 
Query:    1 PLRLEIKKKLSSRSDRVKSVDIHPTEPWVLSALYNGHVFIWDYEVR 138
            PLRL+IKKKLS+RSDRVKSVDIHPTEPW+L++LYNG+VFIW+YE +
Sbjct:    2 PLRLDIKKKLSTRSDRVKSVDIHPTEPWILASLYNGNVFIWNYETQ 47
[Close]
BLAST of mRNA_S-dermatodea_contig11864.1168.1 vs. uniprot
Match: A0A7S1ZQN0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZQN0_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 5.080e-18
Identity = 36/48 (75.00%), Postives = 42/48 (87.50%), Query Frame = 1 
Query:    1 PLRLEIKKKLSSRSDRVKSVDIHPTEPWVLSALYNGHVFIWDYEVRVV 144
            PLRL+IKKKLS+ S+RVKSVDIHP+EPW L+ALYNG+V IWDYE   V
Sbjct:    2 PLRLDIKKKLSASSERVKSVDIHPSEPWALAALYNGNVMIWDYETGSV 49
[Close]
BLAST of mRNA_S-dermatodea_contig11864.1168.1 vs. uniprot
Match: A0A7R9UY64_DIALT (Hypothetical protein (Fragment) n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A7R9UY64_DIALT)

HSP 1 Score: 84.7 bits (208), Expect = 6.270e-18
Identity = 35/48 (72.92%), Postives = 44/48 (91.67%), Query Frame = 1 
Query:    1 PLRLEIKKKLSSRSDRVKSVDIHPTEPWVLSALYNGHVFIWDYEVRVV 144
            PLRL+IK+KLS+RSDRVKSVD+HP EPWVLSALYNGH+F+W+Y  + +
Sbjct:   19 PLRLDIKRKLSARSDRVKSVDVHPVEPWVLSALYNGHLFLWNYNTQTL 66
[Close]
BLAST of mRNA_S-dermatodea_contig11864.1168.1 vs. uniprot
Match: A0A151Z4A3_9MYCE (Coatomer subunit beta' n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151Z4A3_9MYCE)

HSP 1 Score: 84.3 bits (207), Expect = 8.570e-18
Identity = 35/46 (76.09%), Postives = 45/46 (97.83%), Query Frame = 1 
Query:    1 PLRLEIKKKLSSRSDRVKSVDIHPTEPWVLSALYNGHVFIWDYEVR 138
            PLRL++KKKLS+RSDRVKSVDIHPTEPW+L++L+NG+VFIW+YE +
Sbjct:    2 PLRLDVKKKLSTRSDRVKSVDIHPTEPWILASLFNGNVFIWNYETQ 47
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11864.1168.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNI9_ECTSI8.190e-2193.18Vesicle coat complex COPI, beta sub-unit (Partial)... [more]
A0A6H5KKE9_9PHAE8.050e-2090.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3XSS5_HETAK2.780e-1990.91Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A835YRX4_9STRA9.660e-1988.64Coatomer WD associated region-domain-containing pr... [more]
A0A448Z8R3_9STRA1.110e-1879.55Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A7S0NDK6_9EUKA1.320e-1877.08Hypothetical protein (Fragment) n=1 Tax=Phaeocysti... [more]
D3BD99_POLPP1.800e-1880.43Coatomer subunit beta' n=1 Tax=Polysphondylium pal... [more]
A0A7S1ZQN0_9STRA5.080e-1875.00Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A7R9UY64_DIALT6.270e-1872.92Hypothetical protein (Fragment) n=2 Tax=Diacronema... [more]
A0A151Z4A3_9MYCE8.570e-1876.09Coatomer subunit beta' n=1 Tax=Tieghemostelium lac... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11864contigS-dermatodea_contig11864:7035..7184 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score89.7
Seed ortholog evalue4.1e-16
Seed eggNOG ortholog2880.D8LNI9
KEGG koko:K17302
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005798,GO:0006810,GO:0006886,GO:0006888,GO:0006890,GO:0006891,GO:0008104,GO:0008150,GO:0012505,GO:0012506,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0030117,GO:0030120,GO:0030126,GO:0030135,GO:0030137,GO:0030659,GO:0030660,GO:0030662,GO:0030663,GO:0031090,GO:0031410,GO:0031982,GO:0032991,GO:0033036,GO:0034613,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048193,GO:0048475,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071705,GO:0097708,GO:0098588,GO:0098796,GO:0098805
EggNOG free text desc.The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins
EggNOG OGsKOG0276@1,KOG0276@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131,ko04147
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size150
Cds size150
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924220.2307153-CDS-S-dermatodea_contig11864:7034..71841622924220.2307153-CDS-S-dermatodea_contig11864:7034..7184Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11864 7035..7184 +
1694079102.4140294-CDS-S-dermatodea_contig11864:7034..71841694079102.4140294-CDS-S-dermatodea_contig11864:7034..7184Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11864 7035..7184 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11864.1168.1prot_S-dermatodea_contig11864.1168.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11864 7035..7184 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11864.1168.1

>prot_S-dermatodea_contig11864.1168.1 ID=prot_S-dermatodea_contig11864.1168.1|Name=mRNA_S-dermatodea_contig11864.1168.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=50bp
PLRLEIKKKLSSRSDRVKSVDIHPTEPWVLSALYNGHVFIWDYEVRVVE*
back to top

mRNA from alignment at S-dermatodea_contig11864:7035..7184+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11864.1168.1 ID=mRNA_S-dermatodea_contig11864.1168.1|Name=mRNA_S-dermatodea_contig11864.1168.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=150bp|location=Sequence derived from alignment at S-dermatodea_contig11864:7035..7184+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCTCTTCGCCTGGAGATCAAGAAGAAACTATCGTCGAGGTCGGACCGCGT
TAAATCGGTCGATATTCACCCGACCGAGCCCTGGGTCCTTAGCGCGCTCT
ACAACGGGCATGTCTTCATCTGGGACTACGAGGTAAGGGTGGTAGAGTAG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig11864:7035..7184+

>mRNA_S-dermatodea_contig11864.1168.1 ID=mRNA_S-dermatodea_contig11864.1168.1|Name=mRNA_S-dermatodea_contig11864.1168.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=300bp|location=Sequence derived from alignment at S-dermatodea_contig11864:7035..7184+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCTCTTCGCCTGGAGATCAAGAAGAAACTATCGTCGAGGTCGGACCGCGT
TAAATCGGTCGATATTCACCCGACCGAGCCCTGGGTCCTTAGCGCGCTCT
ACAACGGGCATGTCTTCATCTGGGACTACGAGGTAAGGGTGGTAGAGTAG
CCTCTTCGCCTGGAGATCAAGAAGAAACTATCGTCGAGGTCGGACCGCGT
TAAATCGGTCGATATTCACCCGACCGAGCCCTGGGTCCTTAGCGCGCTCT
ACAACGGGCATGTCTTCATCTGGGACTACGAGGTAAGGGTGGTAGAGTAG
back to top