mRNA_S-dermatodea_contig1186.1161.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1186.1161.1
Unique NamemRNA_S-dermatodea_contig1186.1161.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig1186.1161.1 vs. uniprot
Match: D7FH14_ECTSI (Hypothetical F-box and leucine rich repeat containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FH14_ECTSI)

HSP 1 Score: 135 bits (339), Expect = 7.060e-35
Identity = 68/87 (78.16%), Postives = 76/87 (87.36%), Query Frame = 1 
Query:  274 NNMKLVLPEDQFLNVLSYLVVDSVFAISSTCRQLHEWCSLFKVVHSGEEELGNGDLALLVRRFPAVNDLTLHFASRLTRSSYDVLAE 534
            N   + +PEDQFLNVLSYLVVDSVFA+SSTCRQLHEWCSLFK V +GEEEL N DLALLVRRFPAVNDLT+  ASRLT ++Y+VLAE
Sbjct:    3 NTATMKMPEDQFLNVLSYLVVDSVFAMSSTCRQLHEWCSLFKAVDAGEEELRNADLALLVRRFPAVNDLTIRSASRLT-TAYEVLAE 88
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1186.1161.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FH14_ECTSI7.060e-3578.16Hypothetical F-box and leucine rich repeat contain... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1186contigS-dermatodea_contig1186:659..3782 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score134.0
Seed ortholog evalue3.2e-29
Seed eggNOG ortholog2880.D7FH14
KEGG koko:K10268
EggNOG free text desc.modulation by host of viral RNA genome replication
EggNOG OGsKOG4341@1,KOG4341@2759
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04121
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical F-box and leucine rich repeat containing protein
Ec32 orthologEc-26_003110.1
Exons2
Model size534
Cds size255
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1186.1161.1prot_S-dermatodea_contig1186.1161.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1186 659..3503 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924219.8018162-CDS-S-dermatodea_contig1186:658..8031622924219.8018162-CDS-S-dermatodea_contig1186:658..803Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1186 659..803 -
1694079102.0750403-CDS-S-dermatodea_contig1186:658..8031694079102.0750403-CDS-S-dermatodea_contig1186:658..803Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1186 659..803 -
1622924219.810128-CDS-S-dermatodea_contig1186:3393..35031622924219.810128-CDS-S-dermatodea_contig1186:3393..3503Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1186 3394..3503 -
1694079102.0902748-CDS-S-dermatodea_contig1186:3393..35031694079102.0902748-CDS-S-dermatodea_contig1186:3393..3503Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1186 3394..3503 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924219.8177018-UTR-S-dermatodea_contig1186:3503..37821622924219.8177018-UTR-S-dermatodea_contig1186:3503..3782Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1186 3504..3782 -
1694079102.1057937-UTR-S-dermatodea_contig1186:3503..37821694079102.1057937-UTR-S-dermatodea_contig1186:3503..3782Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1186 3504..3782 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1186.1161.1

>prot_S-dermatodea_contig1186.1161.1 ID=prot_S-dermatodea_contig1186.1161.1|Name=mRNA_S-dermatodea_contig1186.1161.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=85bp
MKLVLPEDQFLNVLSYLVVDSVFAISSTCRQLHEWCSLFKVVHSGEEELG
NGDLALLVRRFPAVNDLTLHFASRLTRSSYDVLAE
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mRNA from alignment at S-dermatodea_contig1186:659..3782-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1186.1161.1 ID=mRNA_S-dermatodea_contig1186.1161.1|Name=mRNA_S-dermatodea_contig1186.1161.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3124bp|location=Sequence derived from alignment at S-dermatodea_contig1186:659..3782- (Saccorhiza dermatodea SderLu1190fm monoicous)
CTGGACACTGGACAGGGCGGCACACAGACACAGACAGGAGTTATCACCAC
ACACCCTCGACATATCGACGGCTTATCGATTGGGTTGGAGCTTTTAGCTG
TCTGTTTTCAGCACACAGGGTACCAGCAAGCTCGGAGCTCTGCGTTTTAT
TAACGCACAAAAAAAAAACAGCACAGCAGCGGAAGCGACAAGCGACAGCA
GAGGCGGCGGGATAACATCAAAGGAACCAGGACAGAGGAGCGAGCTTTGA
GGCGATTTGGCCAGCCGCACAACAACAACATGAAGCTCGTGCTGCCCGAG
GACCAGTTCCTGAACGTCCTGAGCTACCTAGTCGTAGACTCGGTCTTCGC
GATTTCCTCCACCTGCCGCCAGCTACACGAGTGGTGCAGGTAGGTGAACC
GCGCCAGACGCACGGAGCTCAGGTATTTCGTGTGAACAGAAGAGCCATAT
GATGATATGATGCGAACAGTTCTGGAGCGAACAGTTCTGGAGACAGGCAT
CAGTCACACCTTCATATAGAGCCACTATTTGTTCATACTATTATACTGCT
GCGTGACAAATCAGTGCTCCAACGCGTGATGGGCGATTTCCTCAGCGCGT
CATACCACACACGACCACCTCGGGGACGTCGTAGTCGAACACTACCGCAG
GCCTGACACAACCTCTATCTCGAGGAACGTATAGCTCTAGCTCTAGCTCT
AGAGCTTTATATATTTCGTACCCCCAGCAGCTCGTGAGACATCAGGCATC
AGTCACCCTCTTGGTGGGGCTTATGATAGCTGTTACTCTTTACAATGTGT
AGAGCTATGAACCAACCAGGACCCCAACGCGTGGTGGGAGATGGGTTTCC
TCCGCGCGTCACGCCACGCACGGCCAACCCACGGCTGTCGTTGTAGTGGA
ACACTTCTACAGGTGGTATCACACACGTCCATGCAGTTCCGGTGTTGAGC
TCTCGGCATTCTTTCCTATCGTATGTAGAAAAACTAGACTACAAGCAGTA
ATAGTAGTATAACTACGGTAGTGTGTAGCCACGGCTACGCCCGTGAGGTG
TGTGCGTTGGCAGAACGATATGCCGGCGGCGGTCGACCGTGGCCGACCGC
GGCCGACCACGGCCGAGCGGGGCGCAAAAATCAAGTACTGGTGTGCAATC
AAAATAATACAGTGCAATCAAAATAATACAAGGGTATTTGAAAATGTAAG
TCATGTGGAATTTAGTATACCAAAATTTGGCCTCAGTTTGAAAATGTAAA
TCGTATGGAATTTAGTATATCAATATTGAATTTAGTATATACCAGGTATC
AATCTAGCCCCAGTTTATTGGCATAAAAAAATTGTTGACTCTTGAATTAA
TTAATAAGGATATAATAGAACGGTCATAATTAGACCGAGACACGGGTCCC
ACGGGGGTACAAGTACAGCACGCAGTTCAGCAGCAGTACATATACAATTG
CTCGAACCATTTTCGTAAGTGTATGATTCTGACCTCGAGTACAAGGTGTA
TTGTCTGATTACTGATTACCTAGAGTTAGTATATAGATGAAGCTTTCGGA
GTTATCGCACGGCAAGAGGGTGTCGAGTCTTGGGTGCACGCGGACGTGTG
GCGTCCAAATAAGTACACTACACACTACACACTACAACAGAGTTTTTCAA
GTACTGCTGTAGAAATACAAATAGATTAGACCTCTACTATAATACTGTAT
AAGAGCTATATACTGTGTATTAACAAGCAGGACTTAATGTCGGTATCATA
ACGTTGAAACGTTGTGCAAATTCCAATGTTCAAAAACAAGGTTTGAATTA
CGAGGGGCAATGTTCAAAAACAAGGTTTAAATTACGAACTACTACAGCTG
TTGTTGTTGTTGTTGTTGTTGTTGGCACACATATGATAGACTTACTTTTC
CGAGGTCCGTCTGAGGTCATAAGGGATAATCCCACCCCTCCCCGGTTCTC
ACCTTTTATTTTTATCGCGCATTGGGTTCGGCACTCCCACAGCTCGCCGA
TTTCTCGGGTTTTTGCTTGCTCACGCTCTATTAATAGCGCTTTCCGCGGG
GGAGGTACGCTAGATAAAGAAAATAAATACGTGTCGACTCCGCCGGGCAA
GATTTGAACCCGGGTCCTCCGCCTACTGGACTGTTGGTCAACCAGTTCAA
CCACGGGGCGCGCGGTCACTATGCGATCCTCCGTAAATAGTTCACATCGA
ACAGGTACAAGAGTACCCGAACGTTGCTACACGTGATACTCCTACCCGTA
CGATAGTGGCGGTGGAAAAAGGATGATATGAGTCTGTCAGGCTTATATTA
GCTCGCTTGCACGATGCGCTCGTGCGTGTTCCAGTCACTGCAGTACTGCT
GTACCCGTAGTGTAGTAGCGACCATGTTTCGGCGAATCAAGCAGGCTCGG
TCCCAAAGAGGGTACCAGGTATGATATTATATATGATATTATATACTCAA
GTATCATACTATTAATAGTGGGTAGCCACGGCTACGACCGTGTGAGGTGT
GCGTTGGCAGTACGATATGCCGACGGAACGCGACACAGAGGTCGAACGCG
GTCGAGCTACTACTGTGCGTGTCGCTGCTGTGCGTGTCGCTGCTGTGTTT
TCGCGTTTATTAAAAAAAAAAGGTCAACACAAACATCAAGTTGTTTGGCA
TCAGACAGCATCCTTGTCTGAACTCTAAATCTCTAGCTCTACAGCAGTAA
TGAAAAATGTTCAAGGCGCTATTACAGTAGTAACCATTAGAGGCGAGCAG
TTTGCCACCTCACAACAGCAGGAAATAAAAGAGATGAGCCGCATACTTGT
GTTGTTGTCGTGTCATCGCGCCGGCAATCTCGAACTACAAATATCATAGG
GCTCTTATGCTATATATAAATCTCGATGTGAAGCCTTATTTCAACCGCAG
AGACGGCGCCACGCCTGTTGAACTCCCGTCCGTCGCCTCCACGCTTGCTT
GCCTCTTTGCCACATCCCTGTCGCATCAGCCTGTTTAAGGTCGTCCACTC
GGGGGAGGAAGAGCTGGGGAACGGGGACCTCGCGCTGCTCGTCAGGCGTT
TTCCGGCGGTGAACGACCTCACGCTGCACTTTGCCTCGAGGCTCACGAGG
TCGTCCTACGATGTCCTCGCCGAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig1186:659..3782-

>mRNA_S-dermatodea_contig1186.1161.1 ID=mRNA_S-dermatodea_contig1186.1161.1|Name=mRNA_S-dermatodea_contig1186.1161.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=510bp|location=Sequence derived from alignment at S-dermatodea_contig1186:659..3782- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAAGCTCGTGCTGCCCGAGGACCAGTTCCTGAACGTCCTGAGCTACCT
AGTCGTAGACTCGGTCTTCGCGATTTCCTCCACCTGCCGCCAGCTACACG
AGTGGTGCAGATGAAGCTCGTGCTGCCCGAGGACCAGTTCCTGAACGTCC
TGAGCTACCTAGTCGTAGACTCGGTCTTCGCGATTTCCTCCACCTGCCGC
CAGCTACACGAGTGGTGCAGCCTGTTTAAGGTCGTCCACTCGGGGGAGGA
AGAGCTGGGGAACGGGGACCTCGCGCTGCTCGTCAGGCGTTTTCCGGCGG
TGAACGACCTCACGCTGCACTTTGCCTCGAGGCTCACGAGGTCGTCCTAC
GATGTCCTCGCCGAGCCTGTTTAAGGTCGTCCACTCGGGGGAGGAAGAGC
TGGGGAACGGGGACCTCGCGCTGCTCGTCAGGCGTTTTCCGGCGGTGAAC
GACCTCACGCTGCACTTTGCCTCGAGGCTCACGAGGTCGTCCTACGATGT
CCTCGCCGAG
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