mRNA_S-dermatodea_contig11858.1160.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11858.1160.1
Unique NamemRNA_S-dermatodea_contig11858.1160.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11858.1160.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11858contigS-dermatodea_contig11858:3392..5110 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size411
Cds size411
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924219.6909587-CDS-S-dermatodea_contig11858:3391..34271622924219.6909587-CDS-S-dermatodea_contig11858:3391..3427Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11858 3392..3427 -
1694079101.9941971-CDS-S-dermatodea_contig11858:3391..34271694079101.9941971-CDS-S-dermatodea_contig11858:3391..3427Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11858 3392..3427 -
1622924219.7015312-CDS-S-dermatodea_contig11858:4735..51101622924219.7015312-CDS-S-dermatodea_contig11858:4735..5110Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11858 4736..5110 -
1694079102.0043643-CDS-S-dermatodea_contig11858:4735..51101694079102.0043643-CDS-S-dermatodea_contig11858:4735..5110Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11858 4736..5110 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11858.1160.1prot_S-dermatodea_contig11858.1160.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11858 3392..5110 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11858.1160.1

>prot_S-dermatodea_contig11858.1160.1 ID=prot_S-dermatodea_contig11858.1160.1|Name=mRNA_S-dermatodea_contig11858.1160.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=137bp
AALTRTVSAAVRYVFRHGGEWKDGHKSYLSVAEAKKNGPPLPFSLFDGVG
RRLERDQAEQVALRKAFTAAIEDYYASNGAACSISTIKMFVRYVICASLV
GGDGSSENRFIGAVSAAMRKEEEKGVALIQGTMEPGD
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mRNA from alignment at S-dermatodea_contig11858:3392..5110-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11858.1160.1 ID=mRNA_S-dermatodea_contig11858.1160.1|Name=mRNA_S-dermatodea_contig11858.1160.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1719bp|location=Sequence derived from alignment at S-dermatodea_contig11858:3392..5110- (Saccorhiza dermatodea SderLu1190fm monoicous)
GCGGCCTTGACGAGGACGGTGTCCGCCGCCGTACGGTATGTATTCCGCCA
CGGGGGGGAGTGGAAGGACGGACACAAGTCCTACCTCAGCGTGGCGGAAG
CGAAGAAGAACGGGCCGCCGCTGCCTTTCAGTCTGTTCGACGGAGTCGGG
AGGCGCCTGGAGCGCGATCAGGCGGAGCAGGTAGCACTTCGCAAGGCATT
CACCGCCGCCATAGAGGACTACTACGCCTCGAACGGGGCGGCATGCTCTA
TATCCACCATCAAGATGTTCGTGCGATACGTCATATGCGCGTCGCTCGTG
GGTGGCGACGGCAGCAGCGAGAACCGGTTCATCGGCGCCGTGTCGGCTGC
GATGAGGAAGGAGGAAGAAAAGGGGGTGGGTGGGTTTGGACTCACGTCGA
CGATGCCTTTTGTGGATGTATGGCAGAGGAGCTTTGTTTTTTCAAATTGA
TTATCACTCGTATAACCGACCGGCCCGCCATTTAAAAAAAAATACTAAAG
TGGATGCTGATCCCGCTTGTGGTCACATGAAGGCACAAGAGCAAGCGAAA
TTCAGCATCCCTACACCGAACGAAAACCTGATTATCATATGTTAACCGCA
TGTCGTATCCATACGAACATAGACCACGCGTCCCAACAATGCCGGGACGG
AGCGATATGCCGNNNNNNNNNNAGCAGCCGGCCATCATCCTTGCGTTTGC
GACGCCAAACGGTATGCCATGGGTTGATTGGACATATCGGGTAACAAAAT
GTTACACATTCAGTAGGTGTGACTATACCCCAAGTACCGCAAAGGGACTG
TAATCATCATGCGAATGCACAAGGACCGCACGCACGCAAGATAAACGACG
GTATGTGTGTGATACACTCGAACTGTAGTGTCTTCTCATGAGCACTCCTG
GCGGAGTACTACTCATAAGTCAATGGTTGCTCTAGGGCGTTCCAACAATC
CAATGTCCCTTTGGGGAGAGACAAGGCGCTTCGACCAAGGTCTTCGAGCT
CACAGGACACACTGCATGAACCACCCCATGCCCTGTAAATGGCACTTTTA
CAGCTCCATGCCACAAAATCCAACCCTACCTCGACCAACCCCACCTCAAA
CGTCGAAGGCAGGGGGGTTGCAGGTCTCAGTTTAACGGGGGGTGGGTTGG
TGCAGTGTCCAATGTTCGCTCGGCAGTAGATCACCTTGCTCACCGGGTTT
CTCCACAAGGAAGGATGTTTTACCAGTGGTTTGTCCCAGGTGTTTGCCAG
ATGCTGGATGATCTCAGCAGCGATCTCGGCAGCGCATTACCTCTACACGG
GTTGCTCCCAGGAACAGCCGTGGGCCAAGAACATTTTAATTGGAGAGCGC
GAGCGCTCAGGTCCAGCCTTTTCGTAGAGAGGAAAGGTATTGGCCCAAGC
TAACTCAGTGAAGGTCCCGTTACGCCGTGTATGATGCTATGGGGCCATTG
CGGTAAACAACACATGCCTTCATACGCATGTGCTATCGTCCCGTTTTCGT
TACAACAATTAGGGATGTTCCGGGGAACATAGTGCCATGTCGTTTAGAGA
AGGACATGATGTGCCTCGATGTATCTTGCGAATACCTAACGATTCACGCC
CCATGCCCACACAGGAGGAAAACAAGCCCACCCAGAGAGACGCCAAAAAC
GATGCCATCGTCTTGATTGCGTCGTCGGATCAGGTGGCATTAATCCAGGG
GACCATGGAGCCAGGCGAT
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Coding sequence (CDS) from alignment at S-dermatodea_contig11858:3392..5110-

>mRNA_S-dermatodea_contig11858.1160.1 ID=mRNA_S-dermatodea_contig11858.1160.1|Name=mRNA_S-dermatodea_contig11858.1160.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=822bp|location=Sequence derived from alignment at S-dermatodea_contig11858:3392..5110- (Saccorhiza dermatodea SderLu1190fm monoicous)
GCGGCCTTGACGAGGACGGTGTCCGCCGCCGTACGGTATGTATTCCGCCA
CGGGGGGGAGTGGAAGGACGGACACAAGTCCTACCTCAGCGTGGCGGAAG
CGAAGAAGAACGGGCCGCCGCTGCCTTTCAGTCTGTTCGACGGAGTCGGG
AGGCGCCTGGAGCGCGATCAGGCGGAGCAGGTAGCACTTCGCAAGGCATT
CACCGCCGCCATAGAGGACTACTACGCCTCGAACGGGGCGGCATGCTCTA
TATCCACCATCAAGATGTTCGTGCGATACGTCATATGCGCGTCGCTCGTG
GGTGGCGACGGCAGCAGCGAGAACCGGTTCATCGGCGCCGTGTCGGCTGC
GATGAGGAAGGAGGAAGAAAAGGGGGCGGCCTTGACGAGGACGGTGTCCG
CCGCCGTACGGTATGTATTCCGCCACGGGGGGGAGTGGAAGGACGGACAC
AAGTCCTACCTCAGCGTGGCGGAAGCGAAGAAGAACGGGCCGCCGCTGCC
TTTCAGTCTGTTCGACGGAGTCGGGAGGCGCCTGGAGCGCGATCAGGCGG
AGCAGGTAGCACTTCGCAAGGCATTCACCGCCGCCATAGAGGACTACTAC
GCCTCGAACGGGGCGGCATGCTCTATATCCACCATCAAGATGTTCGTGCG
ATACGTCATATGCGCGTCGCTCGTGGGTGGCGACGGCAGCAGCGAGAACC
GGTTCATCGGCGCCGTGTCGGCTGCGATGAGGAAGGAGGAAGAAAAGGGG
GTGGCATTAATCCAGGGGACCATGGAGCCAGGCGATGTGGCATTAATCCA
GGGGACCATGGAGCCAGGCGAT
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