mRNA_S-dermatodea_contig11850.1159.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11850.1159.1
Unique NamemRNA_S-dermatodea_contig11850.1159.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig11850.1159.1 vs. uniprot
Match: A0A6H5JGW6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGW6_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 1.220e-15
Identity = 59/119 (49.58%), Postives = 67/119 (56.30%), Query Frame = 1 
Query:    1 GVVTASSEVVVPHDALEVWYHDIAAVTGHHS---------QEEPDWVETVLRSHDNAVVDDMSAALELGGNNQSGGEEGPPGFPTEEAKVWRGPGVPAGGGVSGGGGAVLVHGPPGVGK 330
            G VT SSEVVVPH ALEV YHDI+A     +         + EP WVETVLRSH+ +VVDD+SAA EL     S   +G  G   E         V  GG      GA+LVHGPPGVGK
Sbjct:  531 GAVTISSEVVVPHKALEVSYHDISAAAPSKTTCGEGRRPTRGEPVWVETVLRSHEASVVDDLSAAFELAETGVSA--DGVAGRREEMT-------VRGGGXXXXXXGALLVHGPPGVGK 640
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BLAST of mRNA_S-dermatodea_contig11850.1159.1 vs. uniprot
Match: D7FVM1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVM1_ECTSI)

HSP 1 Score: 58.9 bits (141), Expect = 7.970e-8
Identity = 42/78 (53.85%), Postives = 46/78 (58.97%), Query Frame = 1 
Query:  100 EPDWVETVLRSHDNAVVDDMSAALELGGNNQSG-GEEGPPGFPTEEAKVWRGPGVPAGGGVSGGGGAVLVHGPPGVGK 330
            EP WVETVLRSH+ +VVDD+SAA EL     S  G  G       E    RG     GGG  GG GA+LVHGP GVGK
Sbjct:   17 EPVWVETVLRSHEASVVDDLSAAFELAETGVSASGVAG-----RREEMTVRG-----GGGRGGGNGALLVHGPSGVGK 84
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11850.1159.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JGW6_9PHAE1.220e-1549.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FVM1_ECTSI7.970e-853.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11850contigS-dermatodea_contig11850:5902..6565 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size334
Cds size330
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924219.6455975-CDS-S-dermatodea_contig11850:5901..59981622924219.6455975-CDS-S-dermatodea_contig11850:5901..5998Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11850 5902..5998 +
1694079101.9737613-CDS-S-dermatodea_contig11850:5901..59981694079101.9737613-CDS-S-dermatodea_contig11850:5901..5998Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11850 5902..5998 +
1622924219.6622307-CDS-S-dermatodea_contig11850:6330..65631622924219.6622307-CDS-S-dermatodea_contig11850:6330..6563Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11850 6331..6563 +
1694079101.983703-CDS-S-dermatodea_contig11850:6330..65631694079101.983703-CDS-S-dermatodea_contig11850:6330..6563Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11850 6331..6563 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11850.1159.1prot_S-dermatodea_contig11850.1159.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11850 5902..6563 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11850.1159.1

>prot_S-dermatodea_contig11850.1159.1 ID=prot_S-dermatodea_contig11850.1159.1|Name=mRNA_S-dermatodea_contig11850.1159.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=110bp
GVVTASSEVVVPHDALEVWYHDIAAVTGHHSQEEPDWVETVLRSHDNAVV
DDMSAALELGGNNQSGGEEGPPGFPTEEAKVWRGPGVPAGGGVSGGGGAV
LVHGPPGVGK
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mRNA from alignment at S-dermatodea_contig11850:5902..6565+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11850.1159.1 ID=mRNA_S-dermatodea_contig11850.1159.1|Name=mRNA_S-dermatodea_contig11850.1159.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=664bp|location=Sequence derived from alignment at S-dermatodea_contig11850:5902..6565+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGCGTGGTTACGGCCTCCAGCGAGGTCGTAGTTCCTCACGATGCTCTCGA
GGTGTGGTATCACGACATCGCCGCTGTTACAGGCCACCACTCGCAAGGTT
TGCACTTTTTTTGTGTGTTTTTTTTTGTGTGTTTTTTGTCCCCGGTATAT
TATCTCTCTCTGTAATAGCAGGTTGGTTGAAGCCGAGAGAGGCTCGAAGT
AGTAGAAGTAGACCTCGCCAAAGGCATGTTTCTGGTGTGTCGAATTTTAC
CGATGTAGACGGAAGATATGCCACTCTGCTGTTTGCGGTGTTCCGCGTTC
AGCTGGTCGGCGGCAGCACCGACATGCATGCCAAAGTGTGCGCTCCGTCT
GCCCAGCACCCCCAAACCTTCGCGCCCAACCCCCGACTGCCCGCCCGCAA
CCCTCCCCAAAATACAAACACCACGGCAGAGGAACCAGACTGGGTTGAGA
CCGTTCTGCGTAGCCACGACAACGCTGTCGTTGACGACATGTCCGCGGCC
CTCGAGCTAGGTGGCAATAACCAATCTGGCGGCGAAGAAGGGCCACCCGG
GTTTCCCACCGAGGAAGCAAAAGTGTGGAGGGGCCCGGGGGTGCCCGCTG
GTGGCGGGGTCTCCGGGGGTGGCGGCGCAGTGCTTGTGCACGGTCCTCCT
GGAGTGGGCAAAAC
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Coding sequence (CDS) from alignment at S-dermatodea_contig11850:5902..6565+

>mRNA_S-dermatodea_contig11850.1159.1 ID=mRNA_S-dermatodea_contig11850.1159.1|Name=mRNA_S-dermatodea_contig11850.1159.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=660bp|location=Sequence derived from alignment at S-dermatodea_contig11850:5902..6565+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGCGTGGTTACGGCCTCCAGCGAGGTCGTAGTTCCTCACGATGCTCTCGA
GGTGTGGTATCACGACATCGCCGCTGTTACAGGCCACCACTCGCAAGGGC
GTGGTTACGGCCTCCAGCGAGGTCGTAGTTCCTCACGATGCTCTCGAGGT
GTGGTATCACGACATCGCCGCTGTTACAGGCCACCACTCGCAAGAGGAAC
CAGACTGGGTTGAGACCGTTCTGCGTAGCCACGACAACGCTGTCGTTGAC
GACATGTCCGCGGCCCTCGAGCTAGGTGGCAATAACCAATCTGGCGGCGA
AGAAGGGCCACCCGGGTTTCCCACCGAGGAAGCAAAAGTGTGGAGGGGCC
CGGGGGTGCCCGCTGGTGGCGGGGTCTCCGGGGGTGGCGGCGCAGTGCTT
GTGCACGGTCCTCCTGGAGTGGGCAAAAGGAACCAGACTGGGTTGAGACC
GTTCTGCGTAGCCACGACAACGCTGTCGTTGACGACATGTCCGCGGCCCT
CGAGCTAGGTGGCAATAACCAATCTGGCGGCGAAGAAGGGCCACCCGGGT
TTCCCACCGAGGAAGCAAAAGTGTGGAGGGGCCCGGGGGTGCCCGCTGGT
GGCGGGGTCTCCGGGGGTGGCGGCGCAGTGCTTGTGCACGGTCCTCCTGG
AGTGGGCAAA
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