mRNA_S-dermatodea_contig11842.1154.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11842.1154.1
Unique NamemRNA_S-dermatodea_contig11842.1154.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig11842.1154.1 vs. uniprot
Match: A0A6H5K733_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K733_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 2.760e-30
Identity = 66/100 (66.00%), Postives = 77/100 (77.00%), Query Frame = 1 
Query:    4 PEYGPDRAGQHRANVSPGTAVEVVQKQHQRTGQLTSGTVSRLLTSSGFHPRGIKVMLSGGVVGRVQRIAGIDMAPTAAATAPTTTXXSSAGPNTAMGYSS 303
            P+YGP RAGQ R+NV PGT VEVVQKQHQRTG+LT GTVSRLLT+SGFHPRGIKVML+GGV+GRVQ + G+D A       PT+T       ++A GYSS
Sbjct:  118 PDYGPARAGQRRSNVPPGTPVEVVQKQHQRTGKLTPGTVSRLLTNSGFHPRGIKVMLAGGVIGRVQNVPGVDEA------TPTSTSTDMPVVDSARGYSS 211
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BLAST of mRNA_S-dermatodea_contig11842.1154.1 vs. uniprot
Match: D8LJ50_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ50_ECTSI)

HSP 1 Score: 92.4 bits (228), Expect = 7.530e-22
Identity = 46/55 (83.64%), Postives = 51/55 (92.73%), Query Frame = 1 
Query:    4 PEYGPDRAGQHRANVSPGTAVEVVQKQHQRTGQLTSGTVSRLLTSSGFHPRGIKV 168
            P+YGP RAGQ R+NV PGT+VEVVQKQHQRTG+LT GTVSRLLT+SGFHPRGIKV
Sbjct:   30 PDYGP-RAGQRRSNVPPGTSVEVVQKQHQRTGELTPGTVSRLLTNSGFHPRGIKV 83
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BLAST of mRNA_S-dermatodea_contig11842.1154.1 vs. uniprot
Match: F7NG97_9FIRM (Uncharacterized protein n=1 Tax=Acetonema longum DSM 6540 TaxID=1009370 RepID=F7NG97_9FIRM)

HSP 1 Score: 81.6 bits (200), Expect = 6.760e-18
Identity = 40/58 (68.97%), Postives = 48/58 (82.76%), Query Frame = 1 
Query:   34 HRANVSPGTAVEVVQKQHQRTGQLTSGTVSRLLTSSGFHPRGIKVMLSGGVVGRVQRI 207
            +R N++PGTAV+VVQKQHQRTGQLT G V  LLTSS  H RGIKV L+ G++GRVQ+I
Sbjct:    5 YRKNITPGTAVKVVQKQHQRTGQLTEGIVKDLLTSSPIHHRGIKVRLTSGIIGRVQQI 62
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BLAST of mRNA_S-dermatodea_contig11842.1154.1 vs. uniprot
Match: UPI00029A9FE2 (YwbE family protein n=1 Tax=Marinilabilia salmonicolor TaxID=989 RepID=UPI00029A9FE2)

HSP 1 Score: 81.6 bits (200), Expect = 7.110e-18
Identity = 37/63 (58.73%), Postives = 50/63 (79.37%), Query Frame = 1 
Query:   28 GQHRANVSPGTAVEVVQKQHQRTGQLTSGTVSRLLTSSGFHPRGIKVMLSGGVVGRVQRIAGI 216
            GQHRAN+ PGT V+VV+K+ QR+G +T+G V ++LT S FHP GIKV L+ G+VGRV+ I G+
Sbjct:    3 GQHRANIQPGTEVDVVKKEDQRSGTITTGVVKQILTKSAFHPHGIKVRLTSGIVGRVKEIRGV 65
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BLAST of mRNA_S-dermatodea_contig11842.1154.1 vs. uniprot
Match: A0A357NCH9_9FIRM (YwbE family protein n=1 Tax=Firmicutes bacterium TaxID=1879010 RepID=A0A357NCH9_9FIRM)

HSP 1 Score: 80.9 bits (198), Expect = 1.800e-17
Identity = 40/57 (70.18%), Postives = 46/57 (80.70%), Query Frame = 1 
Query:   37 RANVSPGTAVEVVQKQHQRTGQLTSGTVSRLLTSSGFHPRGIKVMLSGGVVGRVQRI 207
            R N+ PG  V++VQKQHQRTGQLT GTV  LLTSS  HPRGIKV L+ G+VGRVQ+I
Sbjct:    6 RKNILPGIKVKIVQKQHQRTGQLTEGTVKDLLTSSPVHPRGIKVRLTSGIVGRVQQI 62
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BLAST of mRNA_S-dermatodea_contig11842.1154.1 vs. uniprot
Match: A0A3F3I1L9_9BACT (YwbE family protein n=2 Tax=Bacteroidetes/Chlorobi group TaxID=68336 RepID=A0A3F3I1L9_9BACT)

HSP 1 Score: 79.0 bits (193), Expect = 7.700e-17
Identity = 38/60 (63.33%), Postives = 47/60 (78.33%), Query Frame = 1 
Query:   28 GQHRANVSPGTAVEVVQKQHQRTGQLTSGTVSRLLTSSGFHPRGIKVMLSGGVVGRVQRI 207
            G  R ++ PG++VEVVQK HQR+G+LTSG V RLLT S  HP GIKVML  G+VGRV++I
Sbjct:    3 GTQRKDIKPGSSVEVVQKHHQRSGELTSGVVKRLLTKSPSHPHGIKVMLESGIVGRVKKI 62
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BLAST of mRNA_S-dermatodea_contig11842.1154.1 vs. uniprot
Match: UPI00048B85E9 (YwbE family protein n=1 Tax=Proteocatella sphenisci TaxID=181070 RepID=UPI00048B85E9)

HSP 1 Score: 79.0 bits (193), Expect = 9.220e-17
Identity = 41/57 (71.93%), Postives = 47/57 (82.46%), Query Frame = 1 
Query:   37 RANVSPGTAVEVVQKQHQRTGQLTSGTVSRLLTSSGFHPRGIKVMLSGGVVGRVQRI 207
            R+N+  GT V VVQKQ QRTG+LT GTV RLLT+S  H RGIKVML+GG+VGRVQRI
Sbjct:    6 RSNIKIGTKVMVVQKQDQRTGKLTEGTVMRLLTNSSNHHRGIKVMLAGGIVGRVQRI 62
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BLAST of mRNA_S-dermatodea_contig11842.1154.1 vs. uniprot
Match: A0A847YLC2_9FIRM (YwbE family protein n=1 Tax=Veillonellaceae bacterium TaxID=2049049 RepID=A0A847YLC2_9FIRM)

HSP 1 Score: 78.6 bits (192), Expect = 1.270e-16
Identity = 40/57 (70.18%), Postives = 44/57 (77.19%), Query Frame = 1 
Query:   37 RANVSPGTAVEVVQKQHQRTGQLTSGTVSRLLTSSGFHPRGIKVMLSGGVVGRVQRI 207
            R N++PG  V+VVQKQHQRTGQLT G V  +LTSS  H RGIKV L  GVVGRVQRI
Sbjct:    6 RKNIAPGLPVQVVQKQHQRTGQLTEGVVKDILTSSPVHSRGIKVRLESGVVGRVQRI 62
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BLAST of mRNA_S-dermatodea_contig11842.1154.1 vs. uniprot
Match: A0A084JDS9_9CLOT (Uncharacterized protein n=4 Tax=Clostridium TaxID=1485 RepID=A0A084JDS9_9CLOT)

HSP 1 Score: 78.2 bits (191), Expect = 1.540e-16
Identity = 40/60 (66.67%), Postives = 49/60 (81.67%), Query Frame = 1 
Query:   28 GQHRANVSPGTAVEVVQKQHQRTGQLTSGTVSRLLTSSGFHPRGIKVMLSGGVVGRVQRI 207
            G  RA++  G+ V VV+K+ QRTG+LT GTV+RLLT+S  HPRGIKVML GGVVGRVQ+I
Sbjct:    3 GTKRADIKIGSKVLVVKKEDQRTGKLTEGTVTRLLTNSSVHPRGIKVMLEGGVVGRVQKI 62
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BLAST of mRNA_S-dermatodea_contig11842.1154.1 vs. uniprot
Match: A0A1I1AFU2_9CLOT (Uncharacterized protein n=1 Tax=Clostridium frigidicarnis TaxID=84698 RepID=A0A1I1AFU2_9CLOT)

HSP 1 Score: 78.2 bits (191), Expect = 1.580e-16
Identity = 38/60 (63.33%), Postives = 46/60 (76.67%), Query Frame = 1 
Query:   28 GQHRANVSPGTAVEVVQKQHQRTGQLTSGTVSRLLTSSGFHPRGIKVMLSGGVVGRVQRI 207
            G  R N+ PGT V VVQKQ QR+G+LT G V R+LT+S  HPRGIKVML  G+VGRVQ++
Sbjct:    3 GTKRENIKPGTKVMVVQKQDQRSGKLTEGVVKRILTNSHIHPRGIKVMLESGIVGRVQQV 62
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11842.1154.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K733_9PHAE2.760e-3066.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJ50_ECTSI7.530e-2283.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
F7NG97_9FIRM6.760e-1868.97Uncharacterized protein n=1 Tax=Acetonema longum D... [more]
UPI00029A9FE27.110e-1858.73YwbE family protein n=1 Tax=Marinilabilia salmonic... [more]
A0A357NCH9_9FIRM1.800e-1770.18YwbE family protein n=1 Tax=Firmicutes bacterium T... [more]
A0A3F3I1L9_9BACT7.700e-1763.33YwbE family protein n=2 Tax=Bacteroidetes/Chlorobi... [more]
UPI00048B85E99.220e-1771.93YwbE family protein n=1 Tax=Proteocatella sphenisc... [more]
A0A847YLC2_9FIRM1.270e-1670.18YwbE family protein n=1 Tax=Veillonellaceae bacter... [more]
A0A084JDS9_9CLOT1.540e-1666.67Uncharacterized protein n=4 Tax=Clostridium TaxID=... [more]
A0A1I1AFU2_9CLOT1.580e-1663.33Uncharacterized protein n=1 Tax=Clostridium frigid... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11842contigS-dermatodea_contig11842:4930..7285 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score83.6
Seed ortholog evalue8.5e-14
Seed eggNOG ortholog1168289.AJKI01000046_gene876
Preferred nameywbE
EggNOG free text desc.Uncharacterized conserved protein (DUF2196)
EggNOG OGs2FZUG@200643,3XKZ6@558415,4P9RU@976,COG4895@1,COG4895@2
COG Functional cat.S
Best tax levelMarinilabiliaceae
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProtein of unknown function DUF2196
Ec32 orthologEc-02_004770.1
Exons3
Model size439
Cds size435
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11842.1154.1prot_S-dermatodea_contig11842.1154.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11842 4930..7283 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924219.3949075-CDS-S-dermatodea_contig11842:4929..49671622924219.3949075-CDS-S-dermatodea_contig11842:4929..4967Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11842 4930..4967 +
1694079101.7460392-CDS-S-dermatodea_contig11842:4929..49671694079101.7460392-CDS-S-dermatodea_contig11842:4929..4967Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11842 4930..4967 +
1622924219.4065142-CDS-S-dermatodea_contig11842:6365..64921622924219.4065142-CDS-S-dermatodea_contig11842:6365..6492Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11842 6366..6492 +
1694079101.7610927-CDS-S-dermatodea_contig11842:6365..64921694079101.7610927-CDS-S-dermatodea_contig11842:6365..6492Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11842 6366..6492 +
1622924219.4173048-CDS-S-dermatodea_contig11842:7013..72831622924219.4173048-CDS-S-dermatodea_contig11842:7013..7283Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11842 7014..7283 +
1694079101.7714953-CDS-S-dermatodea_contig11842:7013..72831694079101.7714953-CDS-S-dermatodea_contig11842:7013..7283Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11842 7014..7283 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11842.1154.1

>prot_S-dermatodea_contig11842.1154.1 ID=prot_S-dermatodea_contig11842.1154.1|Name=mRNA_S-dermatodea_contig11842.1154.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=145bp
GPEYGPDRAGQHRANVSPGTAVEVVQKQHQRTGQLTSGTVSRLLTSSGFH
PRGIKVMLSGGVVGRVQRIAGIDMAPTAAATAPTTTAPSSAGPNTAMGYS
SSTSSSDSDSGEVVNPALAASATPTGAGRRRHTGGGAPIAATGAS
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mRNA from alignment at S-dermatodea_contig11842:4930..7285+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11842.1154.1 ID=mRNA_S-dermatodea_contig11842.1154.1|Name=mRNA_S-dermatodea_contig11842.1154.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2356bp|location=Sequence derived from alignment at S-dermatodea_contig11842:4930..7285+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGTCCTGAGTACGGACCGGACAGGGCTGGGCAACACAGGTGATGATGATG
CGATCAACGTATATGATACATTATTACCCGCTCTCCCAGATGTGTATGGT
ACTTGTATTTATAAGTAGATGTTGCTTGCACTGGCTACTGGGTATGGCTT
GTGCAGCTACACCAGAGTACAAGCGCTTTCGGACTTGATGTCGTTGGACA
TGGAGGGCATCCTCCAGAGATTGCGAATATCGCGAAGGAGGTCGTTCTGG
TTCTGCCCCCGCCAGAGCGGAAGGAAGGTGTTGAGTCAACGGGATTGTCA
TGCATGCGCATCCGGTGCTATTTCAATTGGTCTCGGGTCCAGAGCGAATG
CCAACAGTATCTACCCACGTTGATCATTCGAGTTACCGTTATGCTATCGC
AGCAGCCACAACACAGCTATTGGAAGAAGATGGCTGCAGCAGTGATTCGA
GAGAATAGCGGGGCCGCAGTGTGAAGTTGTAGCACGGGTTATAACCCCCC
CGCCATGTATTCTTCACAGGTCATCCCCCTTCTATGATCCATATATGGGG
CAAGGACGTCACGTGTTTTTCCCTCTTCGGTCGGCTATCATATCCTCATA
TATCTGATGGTCTGCTTGTTGTTACGTGGCACCTCCCCTCCGTCAGTGTT
TGCGTGCTGCGTTGCCCGCGTGGAGCCTCCAGTTGCTTATGCACGGCAGC
AGTGAGACTCTAACTGCTCTCGGACGCCTACAAGTATCTATTGTCGCTCC
TAGATCCTAGAGTGGTCGCACTGCCTCTTTGTTGGTTTTTTCACTTTTCT
GTCACGGCTATTTATAAAAAACAAAATCTATCATAGTTCCCATGTACGTA
CCTCTCTAACTCACTGGCACACTGGTCGAAGGGCTATGATACTGGTCAGC
AGTCACTTCCAATCGTCACTGGTTGTCCCGCTTCTGTTTCACGTACAGAG
TATCCTTGGCCATAGATATAACTGCATTGATTTTATCATATTATGCGTAC
CTATTGCACGGGATTACCATGTCCCCTAGATATTTAGTTCCCCCTGTGGG
GATGTAACATGCACACATTTCCTTTTCACGAGGCACCTGCCTCTTGGCGT
GCCGTATATTAGTGGCGTGTAGTTGCCCAAGACCCGTGTACACTCCACGC
CATCAATAAAATACGGCATCTGATTGCCTGGGGCTCTGCCCGCCATCTTG
ACCTTCGCCTGTTCACTGCAACACGACAGCGCTGTCAGGTTATTTTTTCG
GTTATGGCACTGCATCAAGCACCTCACGTGCGCAGCTCTTACTCTTAAAT
GTGTTGGGCGTTTGAAACACGTTTTGTCCATCTGCATCAATCACTCTTCT
TGTGAGAATATTTTGAGTCTCGACACATCTCAGCTACGTGTATCGTATTT
TTCTTCAAACGCTGTCACCGCGTGTCTCATCCTCAGGGCAAATGTTTCCC
CTGGAACTGCCGTCGAGGTCGTGCAAAAGCAGCACCAGCGAACGGGGCAG
CTCACCTCTGGAACCGTCAGCCGGCTCTTGACCAGCTCAGGCTTCCACCC
TCGGGGAATCAAGGCAAGCTATCGGTCGGCTATGCACCCCCACAGAGCAC
CAAATCACATTTATCTCGAAAAGTGGCACAGCGTGTGAACCTTTGTGGTG
CATGGGCCGAGCTGCCGTGCCCTGCTGGCGGCGCCCCAGCGCACTCGAGG
AATTCCCCGTGCGGGTGGTCTTTCTGCTTGGGTTTGAAGTTATAATAACA
GCTACTGTATTAATAGTACGTTCAGTAGCTGAAACAGCCGCAATATCATG
AGGAATGTTCGCGGCTGCGACCAGAAAGCAAGCCTTGACCGAAAAGGCGA
TTTTTCAACAGGGCTGTGTGGCGCTTTCGTTGCGCTTGTTTCTTACCATC
GCCTGCCTCTCTCTATCACAGCTGGTGGCTTGTTCCCCGTAAAATGACGG
CCGGCGTGCGATATATGCCACAACAACAGCACTCGTTTATGTCGTGGTAT
GTAATGCTTATGCTTTCCATCGTTGGTTGCATGCAACAGCACCTCTTTTC
CTCGCCCCGCGGTGCTGCTTCTCCAACAAATCAGGTGATGCTGTCGGGGG
GCGTGGTTGGCCGAGTGCAGAGAATCGCGGGAATCGACATGGCTCCAACA
GCAGCAGCAACAGCACCAACAACGACAGCCCCGAGCTCCGCAGGACCGAA
CACCGCGATGGGCTACTCAAGCAGCACCAGCTCCAGCGACAGCGATTCCG
GCGAGGTTGTCAACCCCGCACTAGCCGCATCTGCTACTCCGACAGGCGCG
GGAAGACGACGGCACACTGGGGGGGGTGCGCCCATCGCCGCCACGGGAGC
GTCCGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig11842:4930..7285+

>mRNA_S-dermatodea_contig11842.1154.1 ID=mRNA_S-dermatodea_contig11842.1154.1|Name=mRNA_S-dermatodea_contig11842.1154.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=870bp|location=Sequence derived from alignment at S-dermatodea_contig11842:4930..7285+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGTCCTGAGTACGGACCGGACAGGGCTGGGCAACACAGGGTCCTGAGTAC
GGACCGGACAGGGCTGGGCAACACAGGGCAAATGTTTCCCCTGGAACTGC
CGTCGAGGTCGTGCAAAAGCAGCACCAGCGAACGGGGCAGCTCACCTCTG
GAACCGTCAGCCGGCTCTTGACCAGCTCAGGCTTCCACCCTCGGGGAATC
AAGGGCAAATGTTTCCCCTGGAACTGCCGTCGAGGTCGTGCAAAAGCAGC
ACCAGCGAACGGGGCAGCTCACCTCTGGAACCGTCAGCCGGCTCTTGACC
AGCTCAGGCTTCCACCCTCGGGGAATCAAGGTGATGCTGTCGGGGGGCGT
GGTTGGCCGAGTGCAGAGAATCGCGGGAATCGACATGGCTCCAACAGCAG
CAGCAACAGCACCAACAACGACAGCCCCGAGCTCCGCAGGACCGAACACC
GCGATGGGCTACTCAAGCAGCACCAGCTCCAGCGACAGCGATTCCGGCGA
GGTTGTCAACCCCGCACTAGCCGCATCTGCTACTCCGACAGGCGCGGGAA
GACGACGGCACACTGGGGGGGGTGCGCCCATCGCCGCCACGGGAGCGTCC
GTGATGCTGTCGGGGGGCGTGGTTGGCCGAGTGCAGAGAATCGCGGGAAT
CGACATGGCTCCAACAGCAGCAGCAACAGCACCAACAACGACAGCCCCGA
GCTCCGCAGGACCGAACACCGCGATGGGCTACTCAAGCAGCACCAGCTCC
AGCGACAGCGATTCCGGCGAGGTTGTCAACCCCGCACTAGCCGCATCTGC
TACTCCGACAGGCGCGGGAAGACGACGGCACACTGGGGGGGGTGCGCCCA
TCGCCGCCACGGGAGCGTCC
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