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Homology
BLAST of mRNA_S-dermatodea_contig11838.1153.1 vs. uniprot
Match: D8LPX8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPX8_ECTSI) HSP 1 Score: 119 bits (297), Expect = 8.750e-31 Identity = 68/121 (56.20%), Postives = 83/121 (68.60%), Query Frame = 1
Query: 1 MEHRVLHLEAALVRSEASREACLDLCRAKTDLTVARQEAHELQIAKGA----EDHGGPTSADITALYHALEGSVVLLQIASEKMLHLEQTINRYRPIIPEEVFNELQGCVTHEAVVVSPGP 351
M++RV+HLEAALVRSE LDLCRA+T+L R+EA L AK A D DI ALYHALEGSVVLLQIASEKML LE TI ++R +P ++ ELQ CVT +A+++SP P
Sbjct: 1 MKNRVMHLEAALVRSE------LDLCRARTELEANRREAEALSQAKDAATDRRDRHPVVPGDIPALYHALEGSVVLLQIASEKMLRLEHTIAKHREAMPRYLYRELQDCVTQDAMLLSPLP 115
BLAST of mRNA_S-dermatodea_contig11838.1153.1 vs. uniprot
Match: A0A6H5KJF2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJF2_9PHAE) HSP 1 Score: 97.8 bits (242), Expect = 5.720e-20 Identity = 59/121 (48.76%), Postives = 72/121 (59.50%), Query Frame = 1
Query: 1 MEHRVLHLEAALVRSEASREACLDLCRAKTDLTVARQEAHEL----QIAKGAEDHGGPTSADITALYHALEGSVVLLQIASEKMLHLEQTINRYRPIIPEEVFNELQGCVTHEAVVVSPGP 351
M++RV+HLEAALVRSE LDLCR + A D DI ALYHALEGSVVLLQIASEKML LE TI ++R +P ++ ELQ CVT +A+++SP P
Sbjct: 631 MKNRVMHLEAALVRSE------LDLCRXXXXXXXXXXXXXXXXXXXEAATDRRDRHPVVPGDIPALYHALEGSVVLLQIASEKMLCLEHTIAKHREAMPRHLYRELQDCVTQDAMLLSPLP 745
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-15_001750.1 |
| Exons | 5 |
| Model size | 641 |
| Cds size | 414 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622924219.366248-UTR-S-dermatodea_contig11838:6745..6972 | 1622924219.366248-UTR-S-dermatodea_contig11838:6745..6972 | Saccorhiza dermatodea SderLu1190fm monoicous | UTR | S-dermatodea_contig11838 6746..6972 + |
| 1694079101.7343452-UTR-S-dermatodea_contig11838:6745..6972 | 1694079101.7343452-UTR-S-dermatodea_contig11838:6745..6972 | Saccorhiza dermatodea SderLu1190fm monoicous | UTR | S-dermatodea_contig11838 6746..6972 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig11838.1153.1 >prot_S-dermatodea_contig11838.1153.1 ID=prot_S-dermatodea_contig11838.1153.1|Name=mRNA_S-dermatodea_contig11838.1153.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=138bp
MEHRVLHLEAALVRSEASREACLDLCRAKTDLTVARQEAHELQIAKGAED
HGGPTSADITALYHALEGSVVLLQIASEKMLHLEQTINRYRPIIPEEVFN
ELQGCVTHEAVVVSPGPQQPLTQQQLLLQQHRQRQAV* back to topmRNA from alignment at S-dermatodea_contig11838:2020..6972+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-dermatodea_contig11838.1153.1 ID=mRNA_S-dermatodea_contig11838.1153.1|Name=mRNA_S-dermatodea_contig11838.1153.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4953bp|location=Sequence derived from alignment at S-dermatodea_contig11838:2020..6972+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGAGCACAGGGTGCTGCATCTTGAGGCCGCGCTCGTGCGGTCGGAGGC
AAGTAGGGAGGCGTGTGTGGGGGGGGGGGGGTGAAAAGTTGGACCCGAAC
GCTCGCCTTTATTGTTTTAAAATCAATCAAGTATTACTGTTTTTGATGTT
TAAACATAACTCAGATATTGTACAAATTTGTGACGGGGGGGGGGGCGTAC
TCACGTTTTGCATGCCTTAGCTGTTCGACCATTGACCACGCGTCCTCGAG
AGGACGGAGAAGGGGGGGGGGGGGGGGGGGGTTCGGGGGGTGTGGGTTTG
GGGTTGGGTGGTTCGGGGGGGGGGGTTGGGGTGTTTTTTTGTTTTTTTGG
TTTGTTGTGCTTGTTTTTTCGTCTTTTGCCCACGTCCGTTAGCGTCTTGG
TATCCAGCTTGAGCCCGCTCGTGGTCGGGAGCTGGGAGGTGGGTGGGGGG
GGGGGGCGTTTCGTGGGATTTGGTTTTGAGTTTTAGTTGTTCGTTCGGGC
GGGTATTGGTTGTATTTTGTATTTTTGGTTTTGTTTGGTTTCATCGGCTT
TTGTTTGGTTGTTTTTTTAGATTCGAGTTTTTTCGGTTTTTAGTTTTTTC
TTTTCTTTTCTTTTCTTTTAGGCCCCAAAAATAAAACTCACACAGGAGGA
GTCCCTATTTCGGCGTGTCCAGCGCCACAAGTTGTGCTTGTTGTATGCGG
TGTGAAGGTTTTTAGAAAATAATTTCTGATTTTGAAACTTTTTTGTCACT
CGGAAACGCGCCCATCCGGACACTTTTCGCGCGCCTTCCAAGTATTACAA
AAGCCCGCCTCCTCCATTCTATCCCTAAAACCTAAAAACTCGCTTGAAAA
CAAAACACTTTTTATGGAATGAGACAAAAGTCACTGGTTTATGGTACGTA
TTGAGATCCCAGTTCGTGTGAGGAAGGGGTCTATCCCAGCCCAAGAGACG
TTTGGCACTTGTTCGACGATAAAAATTTCCCGCCTTTTTATTGGCCGAAA
CTGAAAAGTCTGTCGTATACTTAGTATCATATAGCCGTTGAGGAAGTTTG
GCTAAACGCGTCGCAGCCCCAGCCGCGTTCAGGAAAGGTACAGGCCTCGG
ATGAATATCCTCAGGGGCGCTATGATAGTTTACACTGTACAGCAGTATGG
GTTGGGGTAAGGGTGTCTGTCGTATATCATATAGCTGTTGAGGGAATTTA
GGGTGGTGGGGTCGACGCTTGGGGGGGGGCATGCGTATGCCAGCGCTGAC
AAAACAAAAAATGACCGTCAAGCATTTGTTGTAGGCGAAAGTGGTACAGT
AGATATGTAAGTACACCTCTCCCAGCGTGCGTGTGTTGCGTGTGCTGCCC
TCGTGAGATACGTATGTATATGCTTGTGTCATACAGTATATACAGTACAG
TACCTGGTACGTGATCAGTGTGCTTACTATTTTTCCATAGCTTAGGAGGC
TGTTTTCGTGGATGCTTCGTATGAATGATTTGTCGATTTATCGTGTGTGA
CCACGAGGGGGGTCGATCGGCGAACGTTTGGCTTGTGTTATACAGTATGC
AGTACATAATAGGTGTGCTTACTATTTTTCCATAGCTTAGGAGGCTGTTT
TCGTGGATGCTTCGTATGATTGATTTGTCGATTTATCGTGTGTGACCACG
AGGGGGATCGATCGGCGATCGTTGGCGGGCCGGCCGGTTGGTTGTACAGT
AAGCATGACAAGTCAATCAATCAATTATTCAAATCAGTCAATCAAACCAA
AATCCCCGTTGTGTCTTTACGACTCGTTGCGTCCCCGACCCTCTCCGCCT
TCACGCCATCCTCCGTCCGTGGAAACCCCTTCCAGCTGGATCTTTGTCGA
GCGAAGACGGATCTCACGGTGGCACGGCAAGAGGCGCACGAGCTCCAGAT
TGCGAAGGTGATTCAGTGGCATCGTATCGGGTCGTGGAAGAATTATAATT
CTGAAGCCGTTTTTGAGGACGCGTTGGTCTGGAGGGTACAAAAGATCCCC
TTATGAAAGTATTTCCTGTAGGAAAGGGAGCTGTTTTTTTTTTTTCCATT
TGTTTTTAAAGCATGTAGCAGACCCAATTTCCGAGGCACTACAGTATGTT
TGTTCCCTTCTGATTCCGGGGGTTTGTTTGGTTTGTTTTATTTTCTTCTT
GCGTGCTATACTTACAGAGCTGTATATAGGTAGGTTCTCGATTAATCGTG
TGATGACGGGCGGGATGGGCAACCAACTGTGGGCGGGGCCGGTCGGTTGG
TTGTAAGTGTGACAATCAATCAATAAAATAAAATAAAATAAAATATATCA
ATCCAAATACAAAAAATCTATCAAAATCAATGTTGGCAGCGAGAGGAACG
CTTATCATAGCACTCGCTCGACTCGGTGTTGCGTCGTATTTTGTGTTCCT
CCGAAGCACGTAAGCTGCGTGATTTTGCGGGTTTTGGAGCTGTGGCATGG
TTTTGTGGGGAGTGGAGATGGGAAGTTCGCGGCAGACGCAGAGTCGAAGC
CCACGGCTCTGACCCTGCTTGCGGTTCTTGCCCTTTGATTTCTGTCGCAC
GAACCCTAGAGCTGTAAGGTTTATCTCACCAAAATTGATGCCAAACAACT
TGATGTTTACGTTGAGCGCCTAACAGCTTGATTTTACACCTCACCGGCGT
ATAGGCTAAATAAACTACCTACTGCTGTAGTTATTGAGGAAGAATGCTTT
GTCGATTTGTTATCTGTGTTTCCTCCGCGTCACAGACAGTGTGTGTGTGT
GTTATGTAATTGTGCGTCTTGTAGTTATGTATTGCATTGTTTCCCCCCTA
GAGCTATCTATCCCCTTGGTCTGCGGTTGGGATGCAAGAGGCTCAGGAAG
TTTTGGCGGACACAAATCTATTTCACGTTTCACGTACGATCGAGGTGACA
CGTTATATTATTTGTTGTCAAACGTCCTCACTTTCTGTGTGTGTTGTGTT
GTGTTGTGCTGTGTTATGTTTTTTGTTTCCCTTTCCTGTTAATGCAGGGC
GCGGAGGACCATGGAGGCCCAACCTCTGCCGACATCACGGCTCTGTACCA
CGCGCTCGAGGGCTCCGTCGTCCTCTTGCAGGTACCGTACCTCATACCGG
TACCGCTGCCGCACGGTATGATACCCGCGTACCCTGTATGACACGGTATC
GTACCTCTCAACGATGTTTTTACATACCGAACGGTACCCGGGGTGGCCAG
GTGCCGCAGCTTACCGATGTTGACAAAAAGCCGATGGTCGTTGTGCAGTG
GTCGTGACACTTTCGATCGTTAATCCAACACGGTCGTTGCACTTTTTTAT
TTTTGCACACGTAGGATAAGACTTTCTTTTTCCGAGGTAGGTCCGTCTGG
TCACACAAGGGACCAATCAATCATCCCCATCTCTCTTATGCCCGGTATGT
TCTCACCTTTGATTTTTATCGCGAATGCATTGGGTTCATTCGGCACTCCC
TCAGCTCGCCGAGTTTATCGGATTTTGCTGTGGACGTTAAAATGGTGGTT
TATTACGTAGTGGTCGTTGCAGGGTTGTCATTACTCTTTGGTGGCCGTCG
TTGGCTACCACGGCACCCTGCACGATGGTCGAATGACCTGACCTACGGTG
GTGTTTACATGTTGGTCGTTACGTTGCACGATGGACGTTACAGCTGAAAC
GGTGGCTGTTGCGTAACCGTCGTTGCAGATCGCGTCGGAGAAGATGCTGC
ACCTCGAGCAGACTATCAACCGGTATCGCCCCATCATCCCGGAGGAGGTG
TTCAACGAGCTACAGGTGCGTGCGCCCACCATTTTTTATTTTATTCGTTA
ACTATATGATAGTAGGTACTGTAGCCACGGCTACGCCAGTGAGGTGAGCG
ACCGCACTATAAAAAAAACACACACACAAAATCGTATACTTCGAAATAGG
AGTTTAGTGTTCGAAATCGGCCTCGAAAATATCGGCATCATGTCGTCCTC
AAAATTCGTGGTTACATAATCGTTCTCTAAATCGCTGTTAAAAAAGGTTC
CTTGTTGGATTAGTTGAAAACAATATGCCGCTTTGCACACCACTTTAATA
GCAACGATTTAGAGGACAATTTTTTCTACACACCTTTGATGCCAATTGAT
GCAACACATAGGGATTAAAGACCAGATACGACATGCGTTAAACGTATGTA
ACCCCCCCCCCACCACCCCACCCCCGCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCGCCTCCCCCCCCCCGCCCCACACCCCNNNNNNN
NNNAGAAACATTTAAAAGAAGAATTTTTTCTATATACCTTTAATGCTAAT
TACATAAAAACATGGGGATAAAAACACCCAACACAAATGCGTTAAAGTAA
TTTACCCCCCCCCCCCCCCCCCCTCCCGCCTGCCCCCCGCTGCAAATGCT
TCCGCTGCAACGTCTGTTGGGAACTCCCACGCGCGTGGCGGTACCTTATC
TCGTGGAACAAAACCCGAACGGAAACCGCGGTGGACGCCGTGGATTGGGA
AACGGAACATGACATGATGTGGATGCGGATGCGGATACGGAATGGAATGG
AAACGTACCATGGTATATGGGATTGGCATGGAATGTATTTGTTTATTTTT
CGTCAAAATCTATTACGGCAGGGTTGTGTCACTCACGAGGCCGTGGTGGT
ATCCCCCGGGCCGCAGCAACCGCTCACCCAGCAGCAACTTCTCCTGCAGC
AACACCGGCAACGACAAGCTGTGTAGCGTTTTGCGCTATTTCCGCCCCCC
CCCTCCCCCGCCGGATTGGGTATAGGCACGCTCAACATTTGGGTGCGCGG
TATGGCCAACCAACCCATGGCATACCGTTTGGCGTCACAAACGCAAGGAT
GATGGCTAGTAGCTGATATCACCCCTTGTGAAGCGCGGCCTGCTCGGCGA
AAACCCGGCATTGTTCGGACGCGTGGTCTATATCCCGCCTGGTTACGACA
TGC back to topCoding sequence (CDS) from alignment at S-dermatodea_contig11838:2020..6972+ >mRNA_S-dermatodea_contig11838.1153.1 ID=mRNA_S-dermatodea_contig11838.1153.1|Name=mRNA_S-dermatodea_contig11838.1153.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=828bp|location=Sequence derived from alignment at S-dermatodea_contig11838:2020..6972+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGAGCACAGGGTGCTGCATCTTGAGGCCGCGCTCGTGCGGTCGGAGGC
AAGTAGGGAGGCGTGTATGGAGCACAGGGTGCTGCATCTTGAGGCCGCGC
TCGTGCGGTCGGAGGCAAGTAGGGAGGCGTGTCTGGATCTTTGTCGAGCG
AAGACGGATCTCACGGTGGCACGGCAAGAGGCGCACGAGCTCCAGATTGC
GAAGCTGGATCTTTGTCGAGCGAAGACGGATCTCACGGTGGCACGGCAAG
AGGCGCACGAGCTCCAGATTGCGAAGGGCGCGGAGGACCATGGAGGCCCA
ACCTCTGCCGACATCACGGCTCTGTACCACGCGCTCGAGGGCTCCGTCGT
CCTCTTGCAGGGCGCGGAGGACCATGGAGGCCCAACCTCTGCCGACATCA
CGGCTCTGTACCACGCGCTCGAGGGCTCCGTCGTCCTCTTGCAGATCGCG
TCGGAGAAGATGCTGCACCTCGAGCAGACTATCAACCGGTATCGCCCCAT
CATCCCGGAGGAGGTGTTCAACGAGCTACAGATCGCGTCGGAGAAGATGC
TGCACCTCGAGCAGACTATCAACCGGTATCGCCCCATCATCCCGGAGGAG
GTGTTCAACGAGCTACAGGGTTGTGTCACTCACGAGGCCGTGGTGGTATC
CCCCGGGCCGCAGCAACCGCTCACCCAGCAGCAACTTCTCCTGCAGCAAC
ACCGGCAACGACAAGCTGTGTAGGGTTGTGTCACTCACGAGGCCGTGGTG
GTATCCCCCGGGCCGCAGCAACCGCTCACCCAGCAGCAACTTCTCCTGCA
GCAACACCGGCAACGACAAGCTGTGTAG back to top
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