mRNA_S-dermatodea_contig11831.1151.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11831.1151.1
Unique NamemRNA_S-dermatodea_contig11831.1151.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11831.1151.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11831contigS-dermatodea_contig11831:2166..3750 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size360
Cds size357
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11831.1151.1prot_S-dermatodea_contig11831.1151.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11831 2166..3749 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924219.1951106-CDS-S-dermatodea_contig11831:2165..23571622924219.1951106-CDS-S-dermatodea_contig11831:2165..2357Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11831 2166..2357 +
1694079101.5620613-CDS-S-dermatodea_contig11831:2165..23571694079101.5620613-CDS-S-dermatodea_contig11831:2165..2357Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11831 2166..2357 +
1622924219.2033758-CDS-S-dermatodea_contig11831:2592..26671622924219.2033758-CDS-S-dermatodea_contig11831:2592..2667Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11831 2593..2667 +
1694079101.5746036-CDS-S-dermatodea_contig11831:2592..26671694079101.5746036-CDS-S-dermatodea_contig11831:2592..2667Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11831 2593..2667 +
1622924219.213175-CDS-S-dermatodea_contig11831:3659..37491622924219.213175-CDS-S-dermatodea_contig11831:3659..3749Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11831 3660..3749 +
1694079101.5848994-CDS-S-dermatodea_contig11831:3659..37491694079101.5848994-CDS-S-dermatodea_contig11831:3659..3749Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11831 3660..3749 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11831.1151.1

>prot_S-dermatodea_contig11831.1151.1 ID=prot_S-dermatodea_contig11831.1151.1|Name=mRNA_S-dermatodea_contig11831.1151.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=119bp
AAAASSAAASSSGVSPLSSSHHHHQQQQQQQHGITASAASMHLQPSATPY
TNTASTQAKKEIPQRQRQPPSRGSYNKPQYSSSGGLPQQGNFYGSSSSGL
SSAAKPAPGGVYSAPTPPS
back to top

mRNA from alignment at S-dermatodea_contig11831:2166..3750+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11831.1151.1 ID=mRNA_S-dermatodea_contig11831.1151.1|Name=mRNA_S-dermatodea_contig11831.1151.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1585bp|location=Sequence derived from alignment at S-dermatodea_contig11831:2166..3750+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCCGCCGCGGCGTCGTCAGCAGCGGCCTCCTCGTCCGGGGTAAGCCCGTT
GTCGTCGTCGCACCACCACCATCAGCAGCAGCAGCAGCAGCAGCATGGCA
TCACCGCCTCCGCCGCATCGATGCACTTGCAGCCCTCCGCGACGCCGTAC
ACGAACACAGCATCTACTCAGGCTAAGAAGGAGATCCCACAGGTTTGTTG
TTTATCTGTGTGTGTGTGTGTGTTTTTTTTTTTCGGTCTATCTAAACCCA
GTCCATGAAACAGTCCAAGTACCCGCGGGACTACATACGGTACTGTCCCA
AGGACATGAAAGCCGTCACATAATATTGCTGTTTCGTGTCTCTCCCTCGT
CTCATGCTGCCCTTCCCTCGCACGCTTCGTGTACCGACTCCCCAACGTTA
TGGTGTACTGTGTACGGCCCGGCGCAGCGGCAGCGGCAGCCGCCATCTCG
CGGCAGCTACAACAAGCCGCAGTACTCAAGCAGCGGCGGCTTGCCCCAGC
AGGTAGGGGTCCGGGATCTTGTTCATTCCAGGCGGCATTCTCATTCTCAT
GCCCGTGAAAACCTGACAGTGCTGAACCAGTACCGGCCGAATATTCACAC
AACAGTGTCAGTGCCGAATATTCACACAATATTGTCAGTGCCGAATCATT
GCCGGTTTTTATGAATATGAATCTCACAGCGCTGATCCGAAAACCGGCGC
CGTCAAGATTTCATTCACACCTGTCTTTTCACATGTCCTATAATCATAAT
TACTCCTGCCCTCTAAATAATCACACATATCCAGAGCCGGTTAGAAGGGT
CAGGTTCTGGCTGTGGGCCGAACCAGTGCCGATTGTGAGGGTTAAAAATG
TGGCAGGGCCGAACCGAAAACCGGGTCTGGCACTGGTACTGCGAAAATAC
ATGTGTAAGTGCCGGGCATGTGAAGGTATCTGGTTTTTTCCTCCCGAGCT
GCGTTTTGTTGGGCCTTTCCTCCGTTTTTTTTTGTCATGTTTGTGAAACC
GTTTCTTGCGACCTTGGCCTATTTGTTTGTACTACAAGTAGTCGGTATCA
TAGCGACGGTTACTACGCCCGTGAGGTGTGCCCGGTCGCGTCGGTCGCTC
AGCTTTAAAATCAAGTTGTTTGGTGCTCAACGCAAATATAAAGTTGTTTG
GCACCACTTGTTGGTGACGAAAATCGTATAGGATTTGTGTTACGCAAAAC
GTGTGGGAAATAGTGTCGGCATGGTCACTCTAAAATCGCTCTTAAAAAAA
GGGACAAAACGCAATTAAGTACAGCAATAAAGTTTTTTTTCTCTCTCTGC
TCCGATGATACCACAGCGCGTCTGCGCGTCTTCGCGTATGATTGGTTTGC
ACACGAATAACCGATCGGCTTAATCCGCCCCGACTCGTGGTCAGATGTTA
TCATAGTAGCGTAGAGCTACAGTCAAGGAGAATATATTTGCAAAAATTGA
TTACTCCCTGCCCCCTCTTTTTCCTTCTGTCTCCTGCTATCCAGGGAAAC
TTCTACGGAAGCAGCAGCTCGGGCCTGTCGAGCGCCGCCAAGCCCGCCCC
GGGGGGCGTTTACTCGGCACCCACGCCGCCATCGG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig11831:2166..3750+

>mRNA_S-dermatodea_contig11831.1151.1 ID=mRNA_S-dermatodea_contig11831.1151.1|Name=mRNA_S-dermatodea_contig11831.1151.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=714bp|location=Sequence derived from alignment at S-dermatodea_contig11831:2166..3750+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCCGCCGCGGCGTCGTCAGCAGCGGCCTCCTCGTCCGGGGTAAGCCCGTT
GTCGTCGTCGCACCACCACCATCAGCAGCAGCAGCAGCAGCAGCATGGCA
TCACCGCCTCCGCCGCATCGATGCACTTGCAGCCCTCCGCGACGCCGTAC
ACGAACACAGCATCTACTCAGGCTAAGAAGGAGATCCCACAGGCCGCCGC
GGCGTCGTCAGCAGCGGCCTCCTCGTCCGGGGTAAGCCCGTTGTCGTCGT
CGCACCACCACCATCAGCAGCAGCAGCAGCAGCAGCATGGCATCACCGCC
TCCGCCGCATCGATGCACTTGCAGCCCTCCGCGACGCCGTACACGAACAC
AGCATCTACTCAGGCTAAGAAGGAGATCCCACAGCGGCAGCGGCAGCCGC
CATCTCGCGGCAGCTACAACAAGCCGCAGTACTCAAGCAGCGGCGGCTTG
CCCCAGCAGCGGCAGCGGCAGCCGCCATCTCGCGGCAGCTACAACAAGCC
GCAGTACTCAAGCAGCGGCGGCTTGCCCCAGCAGGGAAACTTCTACGGAA
GCAGCAGCTCGGGCCTGTCGAGCGCCGCCAAGCCCGCCCCGGGGGGCGTT
TACTCGGCACCCACGCCGCCATCGGGAAACTTCTACGGAAGCAGCAGCTC
GGGCCTGTCGAGCGCCGCCAAGCCCGCCCCGGGGGGCGTTTACTCGGCAC
CCACGCCGCCATCG
back to top