mRNA_S-dermatodea_contig11802.1144.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11802.1144.1
Unique NamemRNA_S-dermatodea_contig11802.1144.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig11802.1144.1 vs. uniprot
Match: A0A6H5L1X4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1X4_9PHAE)

HSP 1 Score: 147 bits (372), Expect = 8.960e-39
Identity = 78/102 (76.47%), Postives = 85/102 (83.33%), Query Frame = 1 
Query:   37 GSSAAGGRSIDRSQDSVAWLRLDDLKRDPAGRGFVERLESVHDANRLFSEDLGLHSYMLFYELVPLNLDDADKKAQMKEKCALIETQPDYELALQLELQESA 342
            G S+ G    D SQDSVAWLRLDDL   P GRG+VE+L+SVH+ANRLFSEDLGLHSYMLFYELVPLNLDDA K AQMKEK AL+ETQ DYELALQL+L E A
Sbjct: 1068 GQSSLGADDGDSSQDSVAWLRLDDLHEGPGGRGYVEKLDSVHEANRLFSEDLGLHSYMLFYELVPLNLDDAGK-AQMKEKLALMETQGDYELALQLDLMERA 1168
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BLAST of mRNA_S-dermatodea_contig11802.1144.1 vs. uniprot
Match: D7FS31_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS31_ECTSI)

HSP 1 Score: 146 bits (369), Expect = 2.270e-38
Identity = 77/102 (75.49%), Postives = 85/102 (83.33%), Query Frame = 1 
Query:   37 GSSAAGGRSIDRSQDSVAWLRLDDLKRDPAGRGFVERLESVHDANRLFSEDLGLHSYMLFYELVPLNLDDADKKAQMKEKCALIETQPDYELALQLELQESA 342
            G S+ G    + SQDSVAWLRLDDL   P GRG+VERL++VH+ANRLFSEDLGLHSYMLFYELVPLNLDDA K AQMKEK AL+ETQ DYELALQL+L E A
Sbjct: 1060 GKSSIGADDGESSQDSVAWLRLDDLHEGPGGRGYVERLDTVHEANRLFSEDLGLHSYMLFYELVPLNLDDAGK-AQMKEKLALMETQSDYELALQLDLMERA 1160
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11802.1144.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L1X4_9PHAE8.960e-3976.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FS31_ECTSI2.270e-3875.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11802contigS-dermatodea_contig11802:133..5034 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score150.6
Seed ortholog evalue4.7e-34
Seed eggNOG ortholog2880.D7FS31
EggNOG free text desc.Ubiquitin carboxyl-terminal hydrolase
EggNOG OGs2CXTA@1,2RZJR@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size367
Cds size366
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11802.1144.1prot_S-dermatodea_contig11802.1144.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11802 133..5034 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924218.7873144-CDS-S-dermatodea_contig11802:132..3141622924218.7873144-CDS-S-dermatodea_contig11802:132..314Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11802 133..314 +
1694079101.3042006-CDS-S-dermatodea_contig11802:132..3141694079101.3042006-CDS-S-dermatodea_contig11802:132..314Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11802 133..314 +
1622924218.800432-CDS-S-dermatodea_contig11802:2713..27531622924218.800432-CDS-S-dermatodea_contig11802:2713..2753Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11802 2714..2753 +
1694079101.3136294-CDS-S-dermatodea_contig11802:2713..27531694079101.3136294-CDS-S-dermatodea_contig11802:2713..2753Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11802 2714..2753 +
1622924218.8095763-CDS-S-dermatodea_contig11802:3677..37191622924218.8095763-CDS-S-dermatodea_contig11802:3677..3719Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11802 3678..3719 +
1694079101.3210948-CDS-S-dermatodea_contig11802:3677..37191694079101.3210948-CDS-S-dermatodea_contig11802:3677..3719Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11802 3678..3719 +
1622924218.8187017-CDS-S-dermatodea_contig11802:4932..50341622924218.8187017-CDS-S-dermatodea_contig11802:4932..5034Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11802 4933..5034 +
1694079101.3292778-CDS-S-dermatodea_contig11802:4932..50341694079101.3292778-CDS-S-dermatodea_contig11802:4932..5034Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11802 4933..5034 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11802.1144.1

>prot_S-dermatodea_contig11802.1144.1 ID=prot_S-dermatodea_contig11802.1144.1|Name=mRNA_S-dermatodea_contig11802.1144.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=122bp
AAAANGREKERLGSSAAGGRSIDRSQDSVAWLRLDDLKRDPAGRGFVERL
ESVHDANRLFSEDLGLHSYMLFYELVPLNLDDADKKAQMKEKCALIETQP
DYELALQLELQESATAGLRAAG
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mRNA from alignment at S-dermatodea_contig11802:133..5034+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11802.1144.1 ID=mRNA_S-dermatodea_contig11802.1144.1|Name=mRNA_S-dermatodea_contig11802.1144.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4902bp|location=Sequence derived from alignment at S-dermatodea_contig11802:133..5034+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCGGCTGCAGCTAACGGCCGGGAAAAGGAGAGATTGGGTTCGTCGGCCGC
GGGGGGGAGAAGCATCGACCGCAGCCAAGACAGCGTAGCGTGGCTCAGGC
TGGACGACCTGAAGAGGGATCCTGCTGGGAGGGGTTTCGTGGAGAGGTTG
GAGAGCGTTCATGACGCTAACCGCTTGTTCAGGTCCGTTTTTTGTTTTTG
TCGTGTTTCGATGCTGTGTACGTGTTTATTTGAAATCGGCGCGATGTACA
GACAAACCGTAGCCTCGTGTTTTGTCTCTTTAATCGCTGAGCCCTTCCTG
TTGGAGAGGGGACAGTTTTTTTTCTTTTTTTTTTCTTTTTAGTAGGCCCA
AGTTCCGAGGTATGCCCCCTCTGTTTCCGAGAGTTTTGTGTCAATTCCTT
CTGTATGTACTATGTAGGTCATTCCGTGTTTTTTGTTTTGTCGATATCTC
GAGTTCCTATTTGACCCCGAGCGGAACCGGCCACCATTGGTGGGCCGGTC
GGTTGTACGTGTGATGATCAAACCAATCAATCAATCAATCAATCAATCAA
TCAACAATCAATCACTAATTCTGCAAAGCTGCGTGGGCTTGATGGCGCTA
TAATATCGTTGGCATTTGTTGGCAAACTTATGAGGAAACTAATGCCGTGG
ATATAACCAATATAATGTCACGTGGCGCTCGTACTGCTGGCAATTTGGAG
ACAAGTATGTCGGGACACTGCAAAGGGTACACTATCCCCAGGCGAATGGG
ATCAGTTAGCCCCTAACCCCGATATACTAAAGCCTAATTTGGAGATTGCG
GAAACCTAAGAAAAATGGGAAACAAATCAACTCATCTACCGGGGTCAAAG
GGGTTGTCGTGTTTGACGCCAAGTTATTTTCCTGGCAATCGAGAACAAAT
ACATGTGTTCATCACTCAACACGCTGAGTAGCCGCTCAACAAACGCGTAG
CAGGTGTAAATATGCAGGTTTACTGCAGCATGTAGGCGCTCACGCAAACC
GCGGTTTGCTGTCCGCTTCGTCCGGCGATTTACTACCGGATCGTCGACGG
TCGGCGATGCGTTCCAAAAACCCCGACCGCAACGATCGTCGGTTACGAGA
AACGCTATTAATATTACGGGGGAGTAGACCATAGTTAACTTGAACAGGTC
CAAATTTGCCACAAGTCTCAATCTATGAAAGTAAGAACAGGCTGGAATTA
TCGAGAAATCAAGGTCGATGTTCTTGAGCATGGCCATATCTCGTGTCTTT
CATGTTGTTCGCGACATTTTTTTATGTTTGGGTACACTCATGGCCGGAAT
AGCTGGGCGTTCATGGTCGTGATATTTGGTCCTGATTACTTGATTACTTG
ATTATAGTGTACCTCCCTAATACTAGTAGTACAACACAACCCGTATACAA
TCGTGCAACAGCAGTAGTGGCTTGCGTTGCAGACAAGTACGGCATGGGGA
CGGGCCCGGTCCTCTTCCAGGCAGAGGCGGCCGGCGCCCTAGTTCAACCC
AGACTACAGTACAAGTGTACATCTGACGAGGTTAATGGGATGCCACCTTG
AGGAAGAAAACATCTGTAGCTTTCGTGAGAGGTGGCAGAACCTACGCACC
GCTTTCGTGTCGAGGGTGCACTTGATTGATAGCTCGAAGAGAACGTATGC
CGATGTGTACAGAAATAATTGGGGCATGCGCAGTGTTGTCGAGAAATAAT
TGCGCGAAGCGCAGATTTGGGCGGAGGTCATTTGCGGCTTGCCGCAGAAA
AAAATTGGACAGCATATTTTCCGCCGCAGGCAGGAAAATAGCATACGGGT
CATTTCTTGGCCGAAGGCAAAAGCTAGCGTTTTTGTCACCATTCTTGCGG
TACATCGCCAAATGTATGCCTCTTGCGGCCCTCCGAAGGCCCTCATGAAG
CCCTCCGGGGGTCCGGAGGCGATGTTATTTATGCAGCCCCCCGAACAGCG
CACGGCGCCGTGTCGCGTTCGAGGCGCATCTATGGGAATTTTCCAGCTTT
CTGCGCTGCGTGGTGCTGTGTTGCGGTGTGCTACGCTGTGCTACGCTGTG
CCATACGTGTTGCGCGTAATACTGTTTTCTTGATTCAAAAGACGATAACG
ATTAGCCCCGCGTACCGGTCGGCCTTCTCCCCGAACCGCCCCGGCTGCTA
CTGCCATCTTGTACCGCTGGTTGCATTTTTGTTTTGCTTCCTGTCGTGTG
GCTTGCAGGCATTGTTGTTGTTGTTGTTGGCACACATATGATAGACTTGC
TTTTCCGAGGTCCATCTGTGGTCACAAGGGATAATCCCATCTCTCTTATC
CCCGGTTCTCACCTTTGATTTTAATTTCGCGTTGGGTTGGGTACTCCCAC
AGCTCGCCGATTTCTTGGATTTTGGAATAATTAAATCGCGTGAGCGTTGG
GTGCGGCGGCATTGGTCAAAAGGGAAAGCTAAAATCTGCCGCGCTTTCCC
CGCTTCCCGCCGAGGTATGATAGCCTCCCTAACCACACGCCCACTTCGTT
TTTTTTTATTTCGTATCCTGTTCGTTCGGCATCCTGACGGTGCTACCCTT
CTGAACTGGCCCCGTGCATGCTTGCATTCAGTGAGGATCTCGGGCTCCAC
AGCTACATGCTCTTCTATGAGGTGTGAAACACCGCATTGTAGCAGTAATG
AAGTTATGATGTTACCTCCAATATTCACAAGTTGAAAGTCGCGGGCGCCA
TCTGTCAGTTCAATGGGGAAAACATATTTCAAATTCAAACAAAATGAAAT
TTTCTTGTAGAAAACAAAAAAAAACGGTTTGGTTCAAACGCGCAAAAACG
GCCGCAGCAGCTTGGACAATTTGTTTTTGTTTTTTGTTTTTTGTTTTTGT
TGATGCCTCGTTGTGTCGCAGAAACTACTACTTGGAGCGGTTCTCCGTCG
CTACTGGTACTGTACGATAGCCATTTTAGAACTGAATCCGTCTTGGTGCC
GAATATGGTCACTATGGGGTATGGTCTATCATATCGCGGTGACGGGAGCA
CAAACAGGCATCATACAGCACCACCGTGCATGCAAGCTACGCGCAGTAGA
CTTTGACATTTCGTATACAAGGACATTTCCCGCGCTTTTGACTGGCCAAA
AATTGTCGGTCTTTTATCGGAATCTGGTCGCAATGGCCGATGAGGAAATT
GGAGGAAATTTCGCTCAAACGCGGCGTTTGAGCGCGGAAGAGTGGGCGTT
GGGGCCCCGCCTATTCGAAAGGGAAATATAGCCAAAGCAACGTCTCTGGA
GATTCACTTGATGCGTATGATGCTATGGTTCCATGTTATTTATGACGTTA
TAGGATCATGGTACAAGTGTCTTTGTCCTGAGCGACATCCTGGTACTATA
GTGTTGCTTTGATGTGTTTTGTGAGCCAAACATATTTGTTTCCACTGCTT
AATTTTATCCCCCCCGCCGTTTCCCCCGCGCGGGCCGCTATTTTTGTGCC
CTACTCCTCCTCTCGTAACTCGCGCGCGCTACTCCTCGAACGCTTCGCAT
CGCACCGCGTTGCCTGCTCCGCCGTATCTCGACGAAACTCGCCAGCTGGT
GCCGCTCAACCTCGATGACGCGGATAAGAAGGCACAGGTGCGTTACCGCG
CGCCCCGTGGCACACCCGCATCGTCGGGATGATCGACGCTCGAGATTGTG
GAAAGTCTCATGACTGCATGGAGCGTGTGTGTGATCCTAGTCATTTTTCA
CGTTTCCACTGCCGTGCGTCCGTCCGAGCGGTGTGTTTGTGTGAGTGTGT
ATGTGTGAGTGTGTATGTGTTTGTGAGTTTGTTTTTTTGTTTTTTTGTAT
TGTTTGTTTTACAGGAGCGGCTTCCACTCATGGTTTTTCAAGCTGAGCCG
ACATTTGCCGGTGTTTGGTCGCCGTAGTCTAACGGGCTTGGTCCGGCACG
TGAATACTCTGCCATCAGTTTCTCGATTTTGATGACAGTTCCTCGCCGCT
CGATGAGGCGGTGACAAAACAAGAGTCATGATCTCAACACGGGGTTAGAT
CCCTGTTAGCTACAGCCTTGGTGGGGCGATCGGTTATTAAGTGTGAAAAA
CACTACTGTATCATACTGGCAGAAAATATAAATGCTATCAAACAGCAGCG
GTTTGGCAAAATGATAGCGTGCTGTCCCTTTGGATGGTTGAGGCACCTAA
ATCCCTTCATATTATGTCGTGTTTCTGTCCCGAGGTTGACTTTTTTTTGT
TGCGTCTTTTCTGTTTGTGCACTTGTATCGCCGCGTACCCCCGATCACCG
GAACCAGCTTCTTATTTTCAGTAGTGCAAGTTTTCCCTCCTTATTTTCAG
CGAATGATTCCGTTTTATTATTGTCCGCAATCACTCCATTTCGTGAACAC
GGCTGGGGGTCGGCATGACTATCAACGCGAGATTCATACAATAATCAATC
CATTCCTACGCACTGCGACTTAACCAGGTGACCACAATTCAGCGAAAAAG
GTAACAAAAGTGCCTGAAGCAAACAGCTTTAGCGCCCCCACCCCCCCACC
CACCCCACCCTTCGACCTAAACGACCCGAAAAAACTGCGGGCACCTTTTT
ACACTTCGCCCCCCTTCTTTTGTTTCGCTCTTTTCGGCCTATCAGAGAAA
CGATCGGCTAAAAAACAAAACCTTCGCCCCCAAAAGTCGCAAAACTGGGA
GAACAGCCTTCGACCCCTCGGTGGGAGCGGCGTTCGCCTATCTAGAGGCC
CCCCTCTCTCCCAAGTATCTGAAACAAGCTCGTAAGCAAATTCGTAAAAG
CGTTTTGCTTCCTCCCAATCATGCGGCTGCTCTCTTCGTGTCAACCTCAG
ATGAAGGAAAAGTGCGCGCTGATCGAGACGCAGCCCGATTACGAGCTGGC
TCTACAGCTGGAGCTCCAGGAAAGCGCGACGGCAGGGCTGCGAGCAGCGG
GG
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Coding sequence (CDS) from alignment at S-dermatodea_contig11802:133..5034+

>mRNA_S-dermatodea_contig11802.1144.1 ID=mRNA_S-dermatodea_contig11802.1144.1|Name=mRNA_S-dermatodea_contig11802.1144.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=732bp|location=Sequence derived from alignment at S-dermatodea_contig11802:133..5034+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCGGCTGCAGCTAACGGCCGGGAAAAGGAGAGATTGGGTTCGTCGGCCGC
GGGGGGGAGAAGCATCGACCGCAGCCAAGACAGCGTAGCGTGGCTCAGGC
TGGACGACCTGAAGAGGGATCCTGCTGGGAGGGGTTTCGTGGAGAGGTTG
GAGAGCGTTCATGACGCTAACCGCTTGTTCAGGCGGCTGCAGCTAACGGC
CGGGAAAAGGAGAGATTGGGTTCGTCGGCCGCGGGGGGGAGAAGCATCGA
CCGCAGCCAAGACAGCGTAGCGTGGCTCAGGCTGGACGACCTGAAGAGGG
ATCCTGCTGGGAGGGGTTTCGTGGAGAGGTTGGAGAGCGTTCATGACGCT
AACCGCTTGTTCAGTGAGGATCTCGGGCTCCACAGCTACATGCTCTTCTA
TGAGTGAGGATCTCGGGCTCCACAGCTACATGCTCTTCTATGAGCTGGTG
CCGCTCAACCTCGATGACGCGGATAAGAAGGCACAGCTGGTGCCGCTCAA
CCTCGATGACGCGGATAAGAAGGCACAGATGAAGGAAAAGTGCGCGCTGA
TCGAGACGCAGCCCGATTACGAGCTGGCTCTACAGCTGGAGCTCCAGGAA
AGCGCGACGGCAGGGCTGCGAGCAGCGGGGATGAAGGAAAAGTGCGCGCT
GATCGAGACGCAGCCCGATTACGAGCTGGCTCTACAGCTGGAGCTCCAGG
AAAGCGCGACGGCAGGGCTGCGAGCAGCGGGG
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