mRNA_S-dermatodea_contig11801.1143.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11801.1143.1
Unique NamemRNA_S-dermatodea_contig11801.1143.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig11801.1143.1 vs. uniprot
Match: D7G7Q6_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q6_ECTSI)

HSP 1 Score: 341 bits (874), Expect = 9.760e-110
Identity = 170/196 (86.73%), Postives = 176/196 (89.80%), Query Frame = 3 
Query:  183 PMAVRSAAPARSSSLKMQSAGSAYVETLPGAPFGDGKIFDPLGLSDGAAPGEIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYVGPAVDHFQEISAQYPEFWAFSLLGMAFIEYNTITTAFATPSAVTGEGGLKEDYSPGDLGFDPLGIKPTDTDALDAMQTKELNNGRLAMIGIAGMLVQELVNPADIL 770
            PMAVRSAAPA SSS    SAGS YV TLPGAPFGDGKIFDPL LSDGA P +IKKWREAEIKHGRVAMLASLGVLVAE+YHP FMGPDY+GPAVDHFQEISAQYPEFW FSLLGMAFIEYNTI TAF TPSAVTGEGGLKEDY PGDLGFDPL +KP D  ALD M+TKELNNGRLAMIGIAGMLVQEL+NPADIL
Sbjct:   24 PMAVRSAAPASSSSALKMSAGSDYVATLPGAPFGDGKIFDPLNLSDGADPADIKKWREAEIKHGRVAMLASLGVLVAEQYHPLFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKEDYVPGDLGFDPLNLKPEDEAALDVMKTKELNNGRLAMIGIAGMLVQELINPADIL 219
[Close]
BLAST of mRNA_S-dermatodea_contig11801.1143.1 vs. uniprot
Match: D7G7S1_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S1_ECTSI)

HSP 1 Score: 331 bits (849), Expect = 5.430e-106
Identity = 166/214 (77.57%), Postives = 179/214 (83.64%), Query Frame = 3 
Query:  129 MFXGXXXXXXXXXXXXXXPMAVRSAAPARSSSLKMQSAGSAYVETLPGAPFGDGKIFDPLGLSDGAAPGEIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYVGPAVDHFQEISAQYPEFWAFSLLGMAFIEYNTITTAFATPSAVTGEGGLKEDYSPGDLGFDPLGIKPTDTDALDAMQTKELNNGRLAMIGIAGMLVQELVNPADIL 770
            MF G              PMAVRSAAPA S+S    SAGS YV TLPGAPFGDGKIFDPL LSDGA PGEIK WREAEIKHGRVAMLA++GV+VAE+YHP FMGPDY+GPAVDHFQEISAQ+PEFWAFSLLGMAFIEYNTIT A+A PS VTGEGGL+++YSPGDLGFDPL +KP D   L+ MQTKELNNGRLAMIGIAGMLVQELVNPADIL
Sbjct:    7 MFLGTAATLIASSTAFVAPMAVRSAAPASSASALKMSAGSDYVATLPGAPFGDGKIFDPLELSDGAEPGEIKLWREAEIKHGRVAMLATVGVIVAEQYHPLFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTITKAYAEPSPVTGEGGLRDEYSPGDLGFDPLNLKPKDQAGLEKMQTKELNNGRLAMIGIAGMLVQELVNPADIL 220
[Close]
BLAST of mRNA_S-dermatodea_contig11801.1143.1 vs. uniprot
Match: D7G7Q9_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q9_ECTSI)

HSP 1 Score: 323 bits (827), Expect = 1.140e-102
Identity = 164/214 (76.64%), Postives = 175/214 (81.78%), Query Frame = 3 
Query:  129 MFXGXXXXXXXXXXXXXXPMAVRSAAPARSSSLKMQSAGSAYVETLPGAPFGDGKIFDPLGLSDGAAPGEIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYVGPAVDHFQEISAQYPEFWAFSLLGMAFIEYNTITTAFATPSAVTGEGGLKEDYSPGDLGFDPLGIKPTDTDALDAMQTKELNNGRLAMIGIAGMLVQELVNPADIL 770
            MF G              P+AVRSAAPA ++S    SAGS YV TLPGAPF DGKIFDPL LSDGAAPG+IKKWREAEIKHGRVAMLASLG+LVAEEYHP FMG D++GPA+ HFQEISAQ+PEFWAFSLLGMAFIEYNTI TAF TPSAVTGEGGLKEDY PGDLGFDPL +KP    ALD M+TKELNNGRLAMIGIAGML QELVN  DIL
Sbjct:    6 MFLGTAAALIASSTAFVAPVAVRSAAPASAASALKMSAGSDYVATLPGAPFSDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDGEAALDVMKTKELNNGRLAMIGIAGMLAQELVNGQDIL 219
[Close]
BLAST of mRNA_S-dermatodea_contig11801.1143.1 vs. uniprot
Match: D7G7S5_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S5_ECTSI)

HSP 1 Score: 296 bits (758), Expect = 7.790e-93
Identity = 142/160 (88.75%), Postives = 151/160 (94.38%), Query Frame = 3 
Query:  291 KIFDPLGLSDGAAPGEIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYVGPAVDHFQEISAQYPEFWAFSLLGMAFIEYNTITTAFATPSAVTGEGGLKEDYSPGDLGFDPLGIKPTDTDALDAMQTKELNNGRLAMIGIAGMLVQELVNPADIL 770
            +IFDPLGLSDGAAPG+IKKWREAEIKHGRVAMLASLGV+VAE+YHPFFMGPDY+GPAVDHFQEISAQ+PEFWAFSLLGMAF+EYNTI TAF TPSAVTGEGGLKEDY PGDLGFDPL +KP D  ALD M+TKELNNGRLAMIGIAGML QELVNPADIL
Sbjct:   36 QIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFVEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADIL 195
[Close]
BLAST of mRNA_S-dermatodea_contig11801.1143.1 vs. uniprot
Match: D7G7S0_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S0_ECTSI)

HSP 1 Score: 293 bits (751), Expect = 1.810e-91
Identity = 150/214 (70.09%), Postives = 170/214 (79.44%), Query Frame = 3 
Query:  129 MFXGXXXXXXXXXXXXXXPMAVRSAAPARSSSLKMQSAGSAYVETLPGAPFGDGKIFDPLGLSDGAAPGEIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYVGPAVDHFQEISAQYPEFWAFSLLGMAFIEYNTITTAFATPSAVTGEGGLKEDYSPGDLGFDPLGIKPTDTDALDAMQTKELNNGRLAMIGIAGMLVQELVNPADIL 770
            MF G              PMAVRSAAPA S+S    SAG+ Y+ TLPGA   +GKIFD L L+DGA PGEIK WREAEIKHGRVAMLA++GV+VAE+YHPFFMGPDY+GPAVDHFQEI+A++P+FWA+SLLGMAFIEYNTI  A+A PS VTGEGGL+++YSPGDLGFDP  IKP D   L+ MQ KELNNGRLAMIGI GMLVQELVN  DIL
Sbjct:    7 MFLGTAATLIASSAAFVTPMAVRSAAPASSASALKMSAGTDYLATLPGA---NGKIFDLLELADGADPGEIKLWREAEIKHGRVAMLATVGVVVAEQYHPFFMGPDYIGPAVDHFQEITAKFPQFWAYSLLGMAFIEYNTIKKAYAEPSPVTGEGGLRDEYSPGDLGFDPAKIKPKDQAGLEKMQNKELNNGRLAMIGIVGMLVQELVNGQDIL 217
[Close]
BLAST of mRNA_S-dermatodea_contig11801.1143.1 vs. uniprot
Match: A0A6H5JWB4_9PHAE (LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWB4_9PHAE)

HSP 1 Score: 297 bits (760), Expect = 2.550e-90
Identity = 143/160 (89.38%), Postives = 151/160 (94.38%), Query Frame = 3 
Query:  291 KIFDPLGLSDGAAPGEIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYVGPAVDHFQEISAQYPEFWAFSLLGMAFIEYNTITTAFATPSAVTGEGGLKEDYSPGDLGFDPLGIKPTDTDALDAMQTKELNNGRLAMIGIAGMLVQELVNPADIL 770
            +IFDPLGLSDGAAPG+IKKWREAEIKHGRVAMLASLGV+VAE+YHPFFMGPDY+GPAVDHFQEISAQ+PEFWAFSLLGMAFIEYNTI TAF TPSAVTGEGGLKEDY PGDLGFDPL +KP D  ALD M+TKELNNGRLAMIGIAGML QELVNPADIL
Sbjct:  232 QIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADIL 391
[Close]
BLAST of mRNA_S-dermatodea_contig11801.1143.1 vs. uniprot
Match: D7G7Q7_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Q7_ECTSI)

HSP 1 Score: 281 bits (718), Expect = 3.510e-87
Identity = 135/164 (82.32%), Postives = 149/164 (90.85%), Query Frame = 3 
Query:  291 KIFDPLGLSDGAAPGEIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYVGPAVDHFQEISAQYPEFWAFSLLGMAFIEYNTITTAFATPSAVTGEGGLKEDYSPGDLGFDPLGIKPTDTDALDAMQTKELNNGRLAMIGIAGMLVQELVNPADILAFLN 782
            KIFDPLGL+DGA  G+IK WREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDY+GPAVDHFQEISA++PEFWAFSLL +A IEYNTIT A+A PS VTGEGGL+++YSPGDLGFDPL +KPTD  AL+ MQTKELNNGRLAMIGIAG LVQELVNP +IL FL+
Sbjct:   15 KIFDPLGLADGAEVGDIKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISARFPEFWAFSLLALALIEYNTITKAYAEPSFVTGEGGLRDEYSPGDLGFDPLNLKPTDQTALETMQTKELNNGRLAMIGIAGTLVQELVNPTNILDFLH 178
[Close]
BLAST of mRNA_S-dermatodea_contig11801.1143.1 vs. uniprot
Match: A0A6H5K8D0_9PHAE (LHCP protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K8D0_9PHAE)

HSP 1 Score: 262 bits (670), Expect = 6.780e-80
Identity = 145/214 (67.76%), Postives = 149/214 (69.63%), Query Frame = 3 
Query:  129 MFXGXXXXXXXXXXXXXXPMAVRSAAPARSSSLKMQSAGSAYVETLPGAPFGDGKIFDPLGLSDGAAPGEIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYVGPAVDHFQEISAQYPEFWAFSLLGMAFIEYNTITTAFATPSAVTGEGGLKEDYSPGDLGFDPLGIKPTDTDALDAMQTKELNNGRLAMIGIAGMLVQELVNPADIL 770
            MF G              PMAVRS     SS     SAGS YV TLPGAPF DGKIFDPLGLSDGAAPG+IKKWREAEIKHGRVAMLASLGV+VAE                            FWAFSLLGMAFIEYNTI TAF TPSAVTGEGGLKEDY PGDLGFDPL +KP D  ALD M+TKELNNGRLAMIGIAGML QELVNPADIL
Sbjct:    6 MFIGTAATLIASSTAFVAPMAVRSVTTTPSSPGLKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAE----------------------------FWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADIL 191
[Close]
BLAST of mRNA_S-dermatodea_contig11801.1143.1 vs. uniprot
Match: D7G5B4_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5B4_ECTSI)

HSP 1 Score: 253 bits (646), Expect = 3.100e-75
Identity = 120/184 (65.22%), Postives = 147/184 (79.89%), Query Frame = 3 
Query:  216 SSSLKMQSAGSAYVETLPGAPFGDGKIFDPLGLSDGAAPGEIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYVGPAVDHFQEISAQYPEFWAFSLLGMAFIEYNTITTAFATPSAVTGEGGLKEDYSPGDLGFDPLGIKPTDTDALDAMQTKELNNGRLAMIGIAGMLVQELVNPADI 767
            +S+    SAGS YV TLPGAPF DGK++DP+GLS  A P +IKKWREAEIKHGRVAMLAS+GVLVAE +HP F+GPDY+GPA+ HF+EI+A++P+FWA +LL +A++EY  I   FA    VTGEGG++ DY PGDLGFDPLG+ P D   L+ M+TKELN+GRLAMIGI GM+VQELV P  I
Sbjct:   86 TSTAARMSAGSDYVSTLPGAPFADGKVWDPVGLSSEADPEDIKKWREAEIKHGRVAMLASVGVLVAENFHPLFLGPDYIGPAIFHFEEITARFPQFWALTLLAIAWLEYRQINIGFAELDPVTGEGGMRLDYVPGDLGFDPLGLAPEDEHELNVMKTKELNHGRLAMIGITGMIVQELVRPLPI 269
[Close]
BLAST of mRNA_S-dermatodea_contig11801.1143.1 vs. uniprot
Match: A0A6H5JAU1_9PHAE (LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU1_9PHAE)

HSP 1 Score: 218 bits (556), Expect = 8.780e-64
Identity = 114/160 (71.25%), Postives = 120/160 (75.00%), Query Frame = 3 
Query:  291 KIFDPLGLSDGAAPGEIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYVGPAVDHFQEISAQYPEFWAFSLLGMAFIEYNTITTAFATPSAVTGEGGLKEDYSPGDLGFDPLGIKPTDTDALDAMQTKELNNGRLAMIGIAGMLVQELVNPADIL 770
            KI DPLGLSDGAAPG+IKKWRE EIKHGRVAMLASLGV+VAE                            FW FSLLGMAFIEYNTI TAF TPSA+TGEGGLKEDY PGDLGFDPL +KP D  ALD M+TKELNNGRLAMIGIAGM+ QELVNPADIL
Sbjct:   23 KILDPLGLSDGAAPGDIKKWRETEIKHGRVAMLASLGVIVAE----------------------------FWVFSLLGMAFIEYNTIITAFDTPSALTGEGGLKEDYMPGDLGFDPLNLKPDDVAALDVMKTKELNNGRLAMIGIAGMMAQELVNPADIL 154
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11801.1143.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7Q6_ECTSI9.760e-11086.73Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
D7G7S1_ECTSI5.430e-10677.57Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
D7G7Q9_ECTSI1.140e-10276.64Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
D7G7S5_ECTSI7.790e-9388.75Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
D7G7S0_ECTSI1.810e-9170.09Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
A0A6H5JWB4_9PHAE2.550e-9089.38LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D7G7Q7_ECTSI3.510e-8782.32Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
A0A6H5K8D0_9PHAE6.780e-8067.76LHCP protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A... [more]
D7G5B4_ECTSI3.100e-7565.22Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
A0A6H5JAU1_9PHAE8.780e-6471.25LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11801contigS-dermatodea_contig11801:664..4649 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score372.1
Seed ortholog evalue1.8e-100
Seed eggNOG ortholog2880.D7G7S3
KEGG koko:K08914
KEGG Pathwayko00196,ko01100,map00196,map01100
EggNOG free text desc.Chlorophyll A-B binding protein
EggNOG OGs2BEWM@1,2S15M@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00194
Hectar predicted targeting categorychloroplast
Exons4
Model size2186
Cds size672
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11801.1143.1prot_S-dermatodea_contig11801.1143.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11801 2065..4536 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924218.6895394-UTR-S-dermatodea_contig11801:663..20641622924218.6895394-UTR-S-dermatodea_contig11801:663..2064Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11801 664..2064 -
1694079101.239522-UTR-S-dermatodea_contig11801:663..20641694079101.239522-UTR-S-dermatodea_contig11801:663..2064Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11801 664..2064 -
1622924218.755389-UTR-S-dermatodea_contig11801:4536..46491622924218.755389-UTR-S-dermatodea_contig11801:4536..4649Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11801 4537..4649 -
1694079101.2944126-UTR-S-dermatodea_contig11801:4536..46491694079101.2944126-UTR-S-dermatodea_contig11801:4536..4649Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11801 4537..4649 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924218.7029595-CDS-S-dermatodea_contig11801:2064..23491622924218.7029595-CDS-S-dermatodea_contig11801:2064..2349Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11801 2065..2349 -
1694079101.2523496-CDS-S-dermatodea_contig11801:2064..23491694079101.2523496-CDS-S-dermatodea_contig11801:2064..2349Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11801 2065..2349 -
1622924218.7167861-CDS-S-dermatodea_contig11801:2752..28361622924218.7167861-CDS-S-dermatodea_contig11801:2752..2836Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11801 2753..2836 -
1694079101.2649517-CDS-S-dermatodea_contig11801:2752..28361694079101.2649517-CDS-S-dermatodea_contig11801:2752..2836Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11801 2753..2836 -
1622924218.7276125-CDS-S-dermatodea_contig11801:3901..40241622924218.7276125-CDS-S-dermatodea_contig11801:3901..4024Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11801 3902..4024 -
1694079101.2726665-CDS-S-dermatodea_contig11801:3901..40241694079101.2726665-CDS-S-dermatodea_contig11801:3901..4024Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11801 3902..4024 -
1622924218.737803-CDS-S-dermatodea_contig11801:4356..45361622924218.737803-CDS-S-dermatodea_contig11801:4356..4536Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11801 4357..4536 -
1694079101.2819335-CDS-S-dermatodea_contig11801:4356..45361694079101.2819335-CDS-S-dermatodea_contig11801:4356..4536Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11801 4357..4536 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11801.1143.1

>prot_S-dermatodea_contig11801.1143.1 ID=prot_S-dermatodea_contig11801.1143.1|Name=mRNA_S-dermatodea_contig11801.1143.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=224bp
MVSTQMFLGTAASLVASSAAFVAPMAVRSAAPARSSSLKMQSAGSAYVET
LPGAPFGDGKIFDPLGLSDGAAPGEIKKWREAEIKHGRVAMLASLGVLVA
EEYHPFFMGPDYVGPAVDHFQEISAQYPEFWAFSLLGMAFIEYNTITTAF
ATPSAVTGEGGLKEDYSPGDLGFDPLGIKPTDTDALDAMQTKELNNGRLA
MIGIAGMLVQELVNPADILAFLN*
back to top

mRNA from alignment at S-dermatodea_contig11801:664..4649-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11801.1143.1 ID=mRNA_S-dermatodea_contig11801.1143.1|Name=mRNA_S-dermatodea_contig11801.1143.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3986bp|location=Sequence derived from alignment at S-dermatodea_contig11801:664..4649- (Saccorhiza dermatodea SderLu1190fm monoicous)
TCAGGCCCGGTCTGAATACACGCACAGCACCGCCCGCACTCGGTTTTCCG
TTTTCCCCCACTCTCTCACAACTCACCACCTCGCCCTCGACACTCTTATC
TCTACCCTCAATCATGGTGTCTACCCAGATGTTCCTCGGCACTGCTGCCT
CCCTCGTCGCGTCTTCTGCGGCGTTCGTTGCCCCCATGGCTGTGCGCTCC
GCGGCGCCTGCGCGCTCATCGAGCCTCAAGATGCAGAGCGCCGGCTCTGC
GTACGTGGAGACTCTGCCTGGTGCTCCGTTCGGTGACGGCAAGGTGGGTC
GCTAGGCGCCTGTCGATGTGCACGGCCAACTACTATTGCTCGCTGCTGCT
GCTGTGTCAGCGTTTTGTCCATGGAAGCTATCGCCAGGATTGTTTTGTCT
GGCGCGATGCATGTGACATGCACAGCAGCATCACAGGCTCGGCAAAATAG
CGGTTGACTCCTCCCCTCAAAGAGGGCACCGCTGTCGCGAGTGCGTGCGT
GTGTCGTGTCGCTGATCATGACGAGAGCGCCCTCCTCCCAGCCTCTGCCC
CACCCTAGCTTGTACATGTGTATAGTGCATGTTTGCTAACGCCCAACTGG
CGCCCTCCCTTGCCTTACCTCACAGATCTTCGACCCGCTTGGCCTTTCCG
ATGGCGCCGCGCCCGGAGAGATCAAGAAGTGGCGCGAGGCCGAGATCAAG
CACGGACGCGTGGCCATGCTGGCGTCTCTCGGCGTCCTCGTCGCGGAGGT
GAGATATGATGTTTACCTGTCTTGCTTATATTGTTTGTGCTCGCGATGTG
AGCGCTCGGATGCTCCTTCAGGGTTAGTGGTGAATGCCGGCTGTTGTCGC
CGAAGCTTGTCTTGATTTTTGTTTTGCGTATATGTAGCGCATTGTGCTCA
TGATGTGTGCATGCACACGCCCTGTTCCAAACGCACCAGCTTTGTATACA
GTATGATAGAGGCGTCAGGTGGCGCTGTGCGATTTACTCACCAGTTTACA
CCCTTCGCGTCACCACACGGTCTGCATGTATCCCAGTGTTGATTCCTTTA
GACGGAGAGGAGGCCCATATTACAACAGTAATAAATTGATAACAAATAGT
TTCTACACGTACAATAGAGCTAGTCTAGGCCCCGGGGCCCCTATTTATAC
ATATTAGTGTTTGTTCTTTGCTTTTTCTCTATATCTTCTATTTTTTTTTC
TTTTTCCACCTACTCCAACTCTTATACTGATGTCCCTGCCGCGTTGCAAA
TGGCCGTAGCTCAAAAAGGACCTGTAGAGAGGCGAGGGAGCATTGTTTGA
GTCCGAGTTCTCTCTATTAATAGCGTTTTCTCTAAATCTGGGGTGCTTTT
TCTTATTTTTTGTATCATACCATATTATAGTTATTTCTTGTATTATACTA
TAAGTAAGTACCAGGGACGGTATGATACGATATACCAGGTATACTGTAGT
AGAAGTAGAGTTCTGATTAGTTATTTTTCTCCTTGACTCTTTGCGTGTCT
GACCACAAGTCGGGTCGGCTACTGTATATACGTGTGCAATCAACCAATCA
ATCAAATTACAGATTATCTTGGTGTCCTGCTGTAATCAAGTATAGGGGCG
GCCAGAGCGACATGTGCAAGCGAAACCACGTACCATTATATAATATTGTT
TGTTCCGACCGCCCTCTTTCCTCTTGTGATTACTTTTGTATTTGTACATA
GCAACACGTTTTTCTTGGCGGAATTGCTACAAAGGACCAATACTTTGACT
TTCTCTCAACCCTCTCTTTCCCTATTTCCATACATGTATTTCTCCCATGT
TGTATGTGCTCAGGAGTACCACCCGTTCTTCATGGGCCCGGACTACGTTG
GCCCCGCCGTGGACCACTTCCAGGAGATCAGCGCGCAGTACCCCGAGGTA
AGCCCCCGCCGTTACTGGTTTGTCTCGTCAATCGCTCGTACATTGTTGAA
CGAAGGCGGAAAACCTGCACAGGCATGAGACCTTGAAACACGTCTAATTA
GCCATGAAATATTTTCGACATCAACCGGCATCGCGGTGATGCGTGCCCCT
TCATCCAAGTTCGTCGAAATTCAACTCAAACCGTTTGAGTCCGCCAAGCC
AAATGTGCAGTTGGGCGGGGCTTCGCCCAAGGGAGAAGATGTCTTGGTGT
CTAAACTGGGCGTTCCCCTCGCTGTCTCGTTATTCGAAGGTGTTGGATCT
GAACATGTAGGGCACTCTACACGAGAAAAGCGTAAACAAATTGAGTAAAA
ACTAACCCCCGCCTCCCTTTGCTTGTGATTTCCACGATGATGGTGTGCAG
TTCTGGGCGTTCTCCTTGCTGGGCATGGCGTTCATCGAGTACAACACGAT
CACGACCGCGTTCGCCACGCCTAGCGCGGTGACCGGCGAGGGGGGCCTGA
AGGAGGACTACAGCCCGGGAGACCTCGGGTTCGACCCCCTTGGCATCAAG
CCCACGGACACCGACGCACTCGATGCGATGCAGACGAAGGAGCTGAACAA
CGGGCGCCTGGCCATGATCGGCATCGCCGGCATGTTGGTCCAGGAGCTGG
TGAACCCGGCCGACATCCTAGCGTTCCTCAACTAGGGCATTCTAGGGCGA
GCGAGCCATCGTGCGTTGATAGACGGGTGGTTTGTGTCCGCATGTGCAAA
GGATGGGAGCTAGGCCTCCACACAGTTTTGACTTACCGTTATGGATGAGC
ACGATGGAGCTTGGGGGGGGGGGGGCGTCATGCGACGCAAGTTTTGATTT
AGTTTACGTAAACTAGTGAAAGTAGGATTGGTTGTCGTTCCGACGTGATC
GTAAGGGTGACGTATTTCCCCTGGCGAGTCTGCGGTTCGTTTATCCGACT
TTGGTTTTCTGTACTGTACTACTTTTTATACTTTTGACAGTTTTGCCTCT
CTGGCGAGATATTTTGAGATTTTGCGGGGTTGGCCGTCACAGCGGTTGCC
TTAGCGGCGCAGCTTGACGAAGGGTTAAGGGTGGTTGAACGCATGAGCAA
AATGCATGCCCCCCCGTTGTAGCCTGGCGAATGAAAGGTATCTCTGGTGA
AACTTGAGTAGAAGAAATGATTTCTTCCGATGTGGGTTTTGAAATGTAAG
CAGGATGGTTTCGCGAAGGCGACGAATCAACCTCCGCAGCTGCCGTGGTT
GGGAACAACGAAACAAACTATTTTGAAAGATTAAAATGACGCCTGTCATG
AATTTCCAAGGAGCGTTAAGCTACACAAACAACACCTTCGGAATGGTGCG
GTGGGCATACACTGTACTGTTGAAATTATGATGCTTGTATGCATAGCGAG
GTGTAGGATTGCCTCGAAACTTTGGAAGTTTGGCACGATATCCTTCCGTT
GGATTATACGCCTGGCCCTGACCAGCCCTCGCCAAAATCATAGTGTTCCC
CGATTCGATGGGCAGGAGTTACTGGTTGTGGCTTGACTGTCTATGTCGCC
ACACACAATGATACTGCCCGCAGCGCCGAAGCTGATTTTTCACCATGCTC
ACTTCTGTACGCGTCCAGCGATTAGGTAGTTCTACTAATTCTTGATCATG
GTTGGGACATGCGCACAGCCCAATTGTAAAGGGTTGTAAAAGGTTGGATG
GTAGAGGAAGCTTCTTCCCATCGCCATCGAAATGAGATGCCACAGGAAGT
GGTTTTACCATCATAAATAGACAAAATGGCCCAGGAAATAGATGCGACAA
AGACATCGCGGTAGATGAACACATTATCACAAAACAGAAGTTGGCGACTA
GCCAATGTTTCCTTCCTACCAACATAATTGAAGCATTTGAGCTATACTTT
TGGTGTTCAATTCCTTGTATCCATGCCACGTAGCTTTGTACGAAATGCCT
GGGCAGCGCGGTCTTTCTCGCCAGGCCATCATCGCTCACCGTAGATCAAC
TCAACAACTATACATTTAGCAGGATGACGAGAGGGGTATGAAATATGAAA
TGAGCGGGCGGGGAAAATAGTACCACCCGCGTGAAG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig11801:664..4649-

>mRNA_S-dermatodea_contig11801.1143.1 ID=mRNA_S-dermatodea_contig11801.1143.1|Name=mRNA_S-dermatodea_contig11801.1143.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1344bp|location=Sequence derived from alignment at S-dermatodea_contig11801:664..4649- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGTGTCTACCCAGATGTTCCTCGGCACTGCTGCCTCCCTCGTCGCGTC
TTCTGCGGCGTTCGTTGCCCCCATGGCTGTGCGCTCCGCGGCGCCTGCGC
GCTCATCGAGCCTCAAGATGCAGAGCGCCGGCTCTGCGTACGTGGAGACT
CTGCCTGGTGCTCCGTTCGGTGACGGCAAGATGGTGTCTACCCAGATGTT
CCTCGGCACTGCTGCCTCCCTCGTCGCGTCTTCTGCGGCGTTCGTTGCCC
CCATGGCTGTGCGCTCCGCGGCGCCTGCGCGCTCATCGAGCCTCAAGATG
CAGAGCGCCGGCTCTGCGTACGTGGAGACTCTGCCTGGTGCTCCGTTCGG
TGACGGCAAGATCTTCGACCCGCTTGGCCTTTCCGATGGCGCCGCGCCCG
GAGAGATCAAGAAGTGGCGCGAGGCCGAGATCAAGCACGGACGCGTGGCC
ATGCTGGCGTCTCTCGGCGTCCTCGTCGCGGAGATCTTCGACCCGCTTGG
CCTTTCCGATGGCGCCGCGCCCGGAGAGATCAAGAAGTGGCGCGAGGCCG
AGATCAAGCACGGACGCGTGGCCATGCTGGCGTCTCTCGGCGTCCTCGTC
GCGGAGGAGTACCACCCGTTCTTCATGGGCCCGGACTACGTTGGCCCCGC
CGTGGACCACTTCCAGGAGATCAGCGCGCAGTACCCCGAGGAGTACCACC
CGTTCTTCATGGGCCCGGACTACGTTGGCCCCGCCGTGGACCACTTCCAG
GAGATCAGCGCGCAGTACCCCGAGTTCTGGGCGTTCTCCTTGCTGGGCAT
GGCGTTCATCGAGTACAACACGATCACGACCGCGTTCGCCACGCCTAGCG
CGGTGACCGGCGAGGGGGGCCTGAAGGAGGACTACAGCCCGGGAGACCTC
GGGTTCGACCCCCTTGGCATCAAGCCCACGGACACCGACGCACTCGATGC
GATGCAGACGAAGGAGCTGAACAACGGGCGCCTGGCCATGATCGGCATCG
CCGGCATGTTGGTCCAGGAGCTGGTGAACCCGGCCGACATCCTAGCGTTC
CTCAACTAGTTCTGGGCGTTCTCCTTGCTGGGCATGGCGTTCATCGAGTA
CAACACGATCACGACCGCGTTCGCCACGCCTAGCGCGGTGACCGGCGAGG
GGGGCCTGAAGGAGGACTACAGCCCGGGAGACCTCGGGTTCGACCCCCTT
GGCATCAAGCCCACGGACACCGACGCACTCGATGCGATGCAGACGAAGGA
GCTGAACAACGGGCGCCTGGCCATGATCGGCATCGCCGGCATGTTGGTCC
AGGAGCTGGTGAACCCGGCCGACATCCTAGCGTTCCTCAACTAG
back to top