mRNA_S-dermatodea_contig1179.1133.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1179.1133.1
Unique NamemRNA_S-dermatodea_contig1179.1133.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1179.1133.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1179contigS-dermatodea_contig1179:443..2862 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size274
Cds size273
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1179.1133.1prot_S-dermatodea_contig1179.1133.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1179 443..2862 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924217.768985-CDS-S-dermatodea_contig1179:442..5261622924217.768985-CDS-S-dermatodea_contig1179:442..526Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1179 443..526 -
1694079100.527589-CDS-S-dermatodea_contig1179:442..5261694079100.527589-CDS-S-dermatodea_contig1179:442..526Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1179 443..526 -
1622924217.7776365-CDS-S-dermatodea_contig1179:1363..14841622924217.7776365-CDS-S-dermatodea_contig1179:1363..1484Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1179 1364..1484 -
1694079100.5373125-CDS-S-dermatodea_contig1179:1363..14841694079100.5373125-CDS-S-dermatodea_contig1179:1363..1484Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1179 1364..1484 -
1622924217.7860093-CDS-S-dermatodea_contig1179:2794..28621622924217.7860093-CDS-S-dermatodea_contig1179:2794..2862Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1179 2795..2862 -
1694079100.5466585-CDS-S-dermatodea_contig1179:2794..28621694079100.5466585-CDS-S-dermatodea_contig1179:2794..2862Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1179 2795..2862 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1179.1133.1

>prot_S-dermatodea_contig1179.1133.1 ID=prot_S-dermatodea_contig1179.1133.1|Name=mRNA_S-dermatodea_contig1179.1133.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=91bp
VPSPDELDSLKAAAAKAQETILRSAEMEAQLHGLEAESLALKSEATEGAR
IRESLRKEVASLKAKSAGNSNKAGQARCYPGGSGVAARENH
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mRNA from alignment at S-dermatodea_contig1179:443..2862-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1179.1133.1 ID=mRNA_S-dermatodea_contig1179.1133.1|Name=mRNA_S-dermatodea_contig1179.1133.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2420bp|location=Sequence derived from alignment at S-dermatodea_contig1179:443..2862- (Saccorhiza dermatodea SderLu1190fm monoicous)
GTACCTTCCCCAGACGAGCTGGACAGTCTCAAGGCGGCTGCAGCTAAGGC
CCAGGAAACCATTCTTAGGTAAGACGAGTGGGTAGCCACGGCTAGGCCCG
TGTGAGGTGTGCGTTGGCAAGACGATATGCCGACGGAACGCGACACGGAG
GTCGAACGCGGTCGAGCTACTGTACGTATCCCTGCTGTGTTTTCGCTTTT
ATATAAAATAATCGCTCAACGTAAACATCAAGTAGTTTGGCATCAGACAG
CATCCTTGTCTAAAATCAATATACACAATCGGTCATTGTTTCTTTAATTA
ATAAGATGATTCGCTGGATAGTAATACCTCGTGCTTGTACTTACGTAATG
CTCCGACTGTCCAGCTCGCCATCACCCATAGACTCTTGTGCGGATTCACC
CGGACGGGAACGCAGGATGAAGGAAGACTGGAGACCCTCGTTTCGAGGGG
AAATTTTGATGGGACCACCGCGACACTTGTTCCGAGGAATCTCGAAGGAT
ATTCTGATGACCCTCCAATGTACCCCAACGCCTGTCAAATAATTCCAGTT
CCGATTCTTCAGCGTTCACGAAACGATCAGGGTACTCCACATTACAGTAA
AATACATACACGAAACTTGAAGCAGGCGACCGATCGGGTCCACACTAAGT
ACTTGTAGTTTAGGTTGCGGTAATAGTGTTAACGGGGTTGGATATTTCAG
GTCACGTGGCACCTGCCTATGGCGCCTGTGGAGAAGGTGCGCCATGCCCT
TGAAAGTGGGGGAAAGACCGAATACTGGGCGCTGGGTTTTGGAAGCTGCG
GATAAACGTTGTGCATTCGGATGGGGCCGATGCTATGTGGCTCGAACGAC
GCCTGGGGGAAGATCCGTCGAACTGATGCAACGTGATGAAGCTCTCATGC
AGCCATGGGCTTCCCACGGGACCCCCGTGTCGCTGATGCCGCCGAACCTC
GGTGGCAGGAAGCGATATGGGATATCTGTAACGCTTCCTTCCATAGAAGA
ACTGGAATCTTATTGGCTACCTGGTACTTCTCAACGGGAGTATTGCTATC
ATAAAATTTTCAGCTGCATGGCCAGGAGTTGCCTAGAACTTACTCTTAAA
TTTCCGTCGAGTGAAAGAAGTGGTTTACTGAGTGCGTACAGTTGTGTGTC
GTAGACAGCATTGGAGTTTTCCCTGCCGTCGTGCAACCTCCTGCACAGCT
GTGTAGCCGGGGTCCACACAACGGTATTTTCTAGCAGGAAACCAACATAT
CGCATCATCAAAGGCTGGGATATGTCATACTAGCCGCAATAAAAAATATA
TTACCACTATCCAAAGCAAGCCCCGATATCACCTTAAGAGAGCGAAGTTG
AACGTGATACAAACATGTTGTCGTCCAGGTCGGCCGAGATGGAAGCCCAA
CTGCACGGATTGGAAGCGGAGTCCCTAGCGTTAAAGAGTGAAGCTACGGA
AGGCGCTCGGATACGGGAGTCTCTCCGCAAAGAGGTGGCATCCCTGAAGG
TAACCGTCGATGATACATTATTCGGGCACACGAGCATAATGTGGGGAGGA
CCACGTTCGAATCGGAACGCCCCGCGGGCTTCATGTACTCATAATATATA
TACAGCGCATATACATTGAGGTAGCAGACGTACCGTGTTAACTCGACATG
ATTAGGCAAGTGCGTCTGAGGTTTTTATTTTCAATACAGAACATATGATA
GACTATATTTTCCGAGGTCGGTCTGTGGTCACAAGGGATCATCCCATCTC
TCCCCGGTTGTCACCGTTGATTTTTATCGCGCATTGGGTTCGGCACTCGC
GCAGCTCGNNNNNNNNNNCGTCTGCGGGAAATATCCTACTTCCGCCAGAG
GCGATATTTGTTTGCTTACTCACGCTCTCGCGCTTTCCGCGGTGGAGGTA
GAGAAAGTAAACAAATATCGCCTCTGCCGGAAGTAGGATATTTCCCGCAG
ACGACGCCGGTTATTGAACAATTCGCAAAGATGTGACACCACCTACTGTA
GTACAATTCGATCGGGATTATTCTTTATTTGAATATTACAATCCACTTTG
ATCGCCCCCCTGTTCGAGCCCTGCGCAGTTTTGGACACCATGCGCAATTG
GTATTGTCGCGAATGACGTTTTTCGCATTTTTACCTGAGTGACAGGTTGT
ATGTCGTTCTTGAATCTTAGATCGTGTTACCACAGTTACAATATGAGGGC
AGCCACTTTGAGACCATCATCACCCGCATTCTCTTGAACGTTTCCCTAGG
CATTCAACGTGTATATCGCGATCAATCGTACCCATTGCCCGACCATCCCC
TGTATACGTATCAATGTATGTAATATTCTGGGGCAGGCTAAAAGCGCCGG
CAACAGCAACAAGGCAGGCCAGGCCAGGTGCTATCCTGGAGGATCTGGTG
TGGCAGCCAGGGAGAACCAT
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Coding sequence (CDS) from alignment at S-dermatodea_contig1179:443..2862-

>mRNA_S-dermatodea_contig1179.1133.1 ID=mRNA_S-dermatodea_contig1179.1133.1|Name=mRNA_S-dermatodea_contig1179.1133.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=546bp|location=Sequence derived from alignment at S-dermatodea_contig1179:443..2862- (Saccorhiza dermatodea SderLu1190fm monoicous)
GTACCTTCCCCAGACGAGCTGGACAGTCTCAAGGCGGCTGCAGCTAAGGC
CCAGGAAACCATTCTTAGGTACCTTCCCCAGACGAGCTGGACAGTCTCAA
GGCGGCTGCAGCTAAGGCCCAGGAAACCATTCTTAGGTCGGCCGAGATGG
AAGCCCAACTGCACGGATTGGAAGCGGAGTCCCTAGCGTTAAAGAGTGAA
GCTACGGAAGGCGCTCGGATACGGGAGTCTCTCCGCAAAGAGGTGGCATC
CCTGAAGGTCGGCCGAGATGGAAGCCCAACTGCACGGATTGGAAGCGGAG
TCCCTAGCGTTAAAGAGTGAAGCTACGGAAGGCGCTCGGATACGGGAGTC
TCTCCGCAAAGAGGTGGCATCCCTGAAGGCTAAAAGCGCCGGCAACAGCA
ACAAGGCAGGCCAGGCCAGGTGCTATCCTGGAGGATCTGGTGTGGCAGCC
AGGGAGAACCATGCTAAAAGCGCCGGCAACAGCAACAAGGCAGGCCAGGC
CAGGTGCTATCCTGGAGGATCTGGTGTGGCAGCCAGGGAGAACCAT
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