mRNA_S-dermatodea_contig11784.1130.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11784.1130.1
Unique NamemRNA_S-dermatodea_contig11784.1130.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11784.1130.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11784contigS-dermatodea_contig11784:4224..4817 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size594
Cds size351
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11784.1130.1prot_S-dermatodea_contig11784.1130.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11784 4391..4741 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924217.5454297-UTR-S-dermatodea_contig11784:4223..43901622924217.5454297-UTR-S-dermatodea_contig11784:4223..4390Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11784 4224..4390 +
1694079100.3942316-UTR-S-dermatodea_contig11784:4223..43901694079100.3942316-UTR-S-dermatodea_contig11784:4223..4390Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11784 4224..4390 +
1622924217.5659466-UTR-S-dermatodea_contig11784:4741..48171622924217.5659466-UTR-S-dermatodea_contig11784:4741..4817Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11784 4742..4817 +
1694079100.4144347-UTR-S-dermatodea_contig11784:4741..48171694079100.4144347-UTR-S-dermatodea_contig11784:4741..4817Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11784 4742..4817 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924217.5559778-CDS-S-dermatodea_contig11784:4390..47411622924217.5559778-CDS-S-dermatodea_contig11784:4390..4741Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11784 4391..4741 +
1694079100.4040139-CDS-S-dermatodea_contig11784:4390..47411694079100.4040139-CDS-S-dermatodea_contig11784:4390..4741Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11784 4391..4741 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11784.1130.1

>prot_S-dermatodea_contig11784.1130.1 ID=prot_S-dermatodea_contig11784.1130.1|Name=mRNA_S-dermatodea_contig11784.1130.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=117bp
MRGRSMMTGGDCDAWVDGGVLRQSGAAVEEEQPPLRPSKAEAVDVAGAGC
AETKAVMMVVDTPRLRRPCELPLLVLLLLLLLLPLGDMCGCWVLLLRRQP
PPPPSPPPAPRRARIG*
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mRNA from alignment at S-dermatodea_contig11784:4224..4817+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11784.1130.1 ID=mRNA_S-dermatodea_contig11784.1130.1|Name=mRNA_S-dermatodea_contig11784.1130.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=594bp|location=Sequence derived from alignment at S-dermatodea_contig11784:4224..4817+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CGCCGCCGCCCCGTCCCCGCGCTCTCGGGCTGTCCGTTTCTTCGGTGAAT
GGGCGACGTACCGAGGCGGGCGGATCGATTCGCCCGCCGTCGTTGTAGTA
GTCCTCACTGTCTGGGTCTACGCGGCGCGCGGGAAGCCACCAAGACTCGC
GGTTGCGCTCGGCGGAGATGCGAGGCCGTAGCATGATGACGGGCGGTGAT
TGTGATGCTTGGGTAGACGGTGGAGTGCTGCGACAGAGTGGGGCCGCGGT
CGAGGAGGAGCAGCCCCCACTGCGTCCTAGCAAGGCTGAAGCTGTTGATG
TCGCTGGTGCCGGTTGTGCAGAGACGAAGGCAGTCATGATGGTCGTGGAT
ACTCCTCGTTTGCGGCGGCCCTGCGAGCTACCGCTATTGGTGTTGCTGTT
GCTGTTGCTGCTTCTGCCTCTGGGGGACATGTGCGGTTGCTGGGTGCTGC
TGCTTCGTCGGCAGCCACCGCCGCCGCCATCGCCACCACCAGCACCGAGA
AGGGCAAGAATAGGGTGAAGAAGGCAAGATCCCACCAGGGATGCCAGCAG
GAGGAAATGCATAGGCGCTCTGAAAGCCGCGGCCCAGCGTTTGC
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Coding sequence (CDS) from alignment at S-dermatodea_contig11784:4224..4817+

>mRNA_S-dermatodea_contig11784.1130.1 ID=mRNA_S-dermatodea_contig11784.1130.1|Name=mRNA_S-dermatodea_contig11784.1130.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=702bp|location=Sequence derived from alignment at S-dermatodea_contig11784:4224..4817+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCGAGGCCGTAGCATGATGACGGGCGGTGATTGTGATGCTTGGGTAGA
CGGTGGAGTGCTGCGACAGAGTGGGGCCGCGGTCGAGGAGGAGCAGCCCC
CACTGCGTCCTAGCAAGGCTGAAGCTGTTGATGTCGCTGGTGCCGGTTGT
GCAGAGACGAAGGCAGTCATGATGGTCGTGGATACTCCTCGTTTGCGGCG
GCCCTGCGAGCTACCGCTATTGGTGTTGCTGTTGCTGTTGCTGCTTCTGC
CTCTGGGGGACATGTGCGGTTGCTGGGTGCTGCTGCTTCGTCGGCAGCCA
CCGCCGCCGCCATCGCCACCACCAGCACCGAGAAGGGCAAGAATAGGGTG
AATGCGAGGCCGTAGCATGATGACGGGCGGTGATTGTGATGCTTGGGTAG
ACGGTGGAGTGCTGCGACAGAGTGGGGCCGCGGTCGAGGAGGAGCAGCCC
CCACTGCGTCCTAGCAAGGCTGAAGCTGTTGATGTCGCTGGTGCCGGTTG
TGCAGAGACGAAGGCAGTCATGATGGTCGTGGATACTCCTCGTTTGCGGC
GGCCCTGCGAGCTACCGCTATTGGTGTTGCTGTTGCTGTTGCTGCTTCTG
CCTCTGGGGGACATGTGCGGTTGCTGGGTGCTGCTGCTTCGTCGGCAGCC
ACCGCCGCCGCCATCGCCACCACCAGCACCGAGAAGGGCAAGAATAGGGT
GA
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