mRNA_S-dermatodea_contig11776.1126.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig11776.1126.1 vs. uniprot
Match: D8LBW9_ECTSI (Novel cap binding protein nCBP n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBW9_ECTSI) HSP 1 Score: 470 bits (1210), Expect = 8.460e-160 Identity = 269/358 (75.14%), Postives = 287/358 (80.17%), Query Frame = 1
Query: 283 ATGPAYESLYDEPEDTTGVRQTLIQNRYCFWYYRKGAQVKDKDPSDAYESGIKVVESFQTVEHFWRIYNHILRADQVPNATDVHLFRDGIKPTWEDPSNSRGGQLLVRLKKGLASRAWESLVLAIVGEQFDVGNEICGAVVSVRYSEDVISVWNRSASNTEGIDKIRESVKRILKIPSFVQVEYRRHQDNLGAANVRAE-GGGGFPSASPGFAPRGAPPGAGGAWTRNR--GGARGLGXXXXXXXXXKDGDRA-PAASGNMPAETWARGPPEARDRDREGGGFRAGXXXXMGGFRPPPGRWAERRXXXXXXXXXXXXXM------------------KDFAR-DRGDREKDLEKWGKV 1287
A+GPAYESLY+EPED TG RQTLIQNRYCFWYYRKGAQ + KDPS+AYESGIKVV+SFQTVEHFWRIYNHILRADQVPNATDVHLFRDGIKPTWED SNSRGGQLL+RLKKGLASRAWESLVLAI+GEQFDVGNEICGAVVSVRYSEDVISVWNRSASNTEGI+KIR++VKR+L+IPSFVQVEYRRHQDNLGAA+VR E GGGGFP+ASPGF PRG PPG GAWTR+ GG RG+G KDG+RA PAA G MP ETWARGPPEARDRDR+ GGFR XXXX XXXXXXXXXXX K F R DR DREKDLEKWGKV
Sbjct: 73 ASGPAYESLYNEPEDLTGTRQTLIQNRYCFWYYRKGAQKESKDPSEAYESGIKVVDSFQTVEHFWRIYNHILRADQVPNATDVHLFRDGIKPTWEDASNSRGGQLLIRLKKGLASRAWESLVLAIIGEQFDVGNEICGAVVSVRYSEDVISVWNRSASNTEGIEKIRDTVKRLLQIPSFVQVEYRRHQDNLGAASVREERGGGGFPAASPGFGPRGGPPG--GAWTRHGRGGGPRGMGDRGDDHHH-KDGERAAPAAGGGMPQETWARGPPEARDRDRDAGGFRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGKDYXXXXXXXXXXXXXXXXKGFGRGDRVDREKDLEKWGKV 427
BLAST of mRNA_S-dermatodea_contig11776.1126.1 vs. uniprot
Match: A0A835Z354_9STRA (Putative eukaryotic initiation factor 4E n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z354_9STRA) HSP 1 Score: 267 bits (682), Expect = 1.700e-84 Identity = 137/226 (60.62%), Postives = 166/226 (73.45%), Query Frame = 1
Query: 307 LYDEPEDTTGVRQTLIQNRYCFWYYRKG-AQVKDKDPSDAYESGIKVVESFQTVEHFWRIYNHILRADQVPNATDVHLFRDGIKPTWEDPSNSRGGQLLVRLKKGLASRAWESLVLAIVGEQFDVGNEICGAVVSVRYSEDVISVWNRSASNTEGIDKIRESVKRILKIPSFVQVEYRRHQDNLGAANVRAEGGGGFPSASPGFAPRGAPPGA--GGAWTRNRGGA 975
LYD PEDTTG QT IQNRYCFWY +KG Q+ +D YES IK + SFQTVEHFWRIYNH+ R DQVP TD HLF+DGIKP WED N+RGG ++RLKKGLASR + L+LA++GEQFDVGNEICGAV+SVRYSEDV+ VWNR+A N E DKIR+ ++RILK+P+FVQ+EYRRHQD++ ++GG +G PG GG+W+R GGA
Sbjct: 11 LYDSPEDTTGGTQTAIQNRYCFWYKQKGNKQLTTED----YESSIKQLASFQTVEHFWRIYNHLQRPDQVPIGTDYHLFKDGIKPAWEDSHNARGGLWMMRLKKGLASR--QELLLAMIGEQFDVGNEICGAVMSVRYSEDVVYVWNRNADNREAADKIRDQIRRILKLPNFVQLEYRRHQDSMSGLAGGSQGGXXX------XXNQGQQPGVFRGGSWSRGPGGA 224
BLAST of mRNA_S-dermatodea_contig11776.1126.1 vs. uniprot
Match: A0A7S2B9L2_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B9L2_9STRA) HSP 1 Score: 244 bits (623), Expect = 8.560e-75 Identity = 108/193 (55.96%), Postives = 148/193 (76.68%), Query Frame = 1
Query: 283 ATGPAYES--LYDEPEDTTGVRQTLIQNRYCFWYYRKGAQVKDKDPSDAYESGIKVVESFQTVEHFWRIYNHILRADQVPNATDVHLFRDGIKPTWEDPSNSRGGQLLVRLKKGLASRAWESLVLAIVGEQFDVGNEICGAVVSVRYSEDVISVWNRSASNTEGIDKIRESVKRILKIPSFVQVEYRRHQDNL 855
AT P Y L DEPED +QT IQNRY FW+ ++ Q K +D +++ ++ + SFQTV+HFWR+Y+H+ RA +P TD HLF+DGIKPTWEDPSN +GG+ ++RL+KGLA+R WE L+L IVGEQFDVGNE+CGAV+S+RY+ED+IS+WNR+A NTE KIR+ ++R+L++P+F+ EY+RH D L
Sbjct: 8 ATAPRYSDAELVDEPEDLE--KQTAIQNRYVFWFMQR--QSKSAVGNDNFDANLQQIASFQTVQHFWRVYDHVQRATSLPQMTDFHLFKDGIKPTWEDPSNKQGGKWIIRLRKGLAARYWEELLLGIVGEQFDVGNEVCGAVLSIRYNEDIISIWNRNADNTEATSKIRDHMRRLLRLPAFISTEYKRHADAL 196
BLAST of mRNA_S-dermatodea_contig11776.1126.1 vs. uniprot
Match: F0W0Q3_9STRA (Eukaryotic initiation factor 4E putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W0Q3_9STRA) HSP 1 Score: 224 bits (571), Expect = 5.310e-67 Identity = 97/183 (53.01%), Postives = 136/183 (74.32%), Query Frame = 1
Query: 307 LYDEPEDTTGVRQTLIQNRYCFWYYRKGAQVKDKDPSDAYESGIKVVESFQTVEHFWRIYNHILRADQVPNATDVHLFRDGIKPTWEDPSNSRGGQLLVRLKKGLASRAWESLVLAIVGEQFDVGNEICGAVVSVRYSEDVISVWNRSASNTEGIDKIRESVKRILKIPSFVQVEYRRHQDNL 855
+ + +DTTG IQN Y FWY ++ K +++YE IK + F+TV+ FW IYNH++R + +PN D HLF+ GIKP WEDPSN RGG+ +VR++KG+ASR WE L+LAI+GEQFDVGNEICGAV+S+RY+ED+IS+WNR+A N E +IR++++R+L +P FV +EY+RH +L
Sbjct: 11 ISEADDDTTGKSDAPIQNMYTFWYMKRNTANK----AESYEKSIKELGDFKTVQGFWCIYNHLVRPNDLPNTMDYHLFKTGIKPMWEDPSNRRGGKWMVRMRKGIASRYWEDLILAIIGEQFDVGNEICGAVISIRYNEDIISLWNRNADNNEACYRIRDTMRRVLNLPQFVALEYKRHDASL 189
BLAST of mRNA_S-dermatodea_contig11776.1126.1 vs. uniprot
Match: A0A7S3LL32_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LL32_9STRA) HSP 1 Score: 224 bits (572), Expect = 5.590e-67 Identity = 101/186 (54.30%), Postives = 139/186 (74.73%), Query Frame = 1
Query: 349 LIQNRYCFWYYRKGA-QVKDKDPSDAYESGIKVVESFQTVEHFWRIYNHILRADQVPNATDVHLFRDGIKPTWEDPSNSRGGQLLVRLKKGLASRAWESLVLAIVGEQFDVGNEICGAVVSVRYSEDVISVWNRSASNTEGIDKIRESVKRILKIPSFVQVEYRRH----QDNLGAANVRAEGGGG 891
L+ ++YCFWY R+G + K P+D YE IK + F TVE FW++YNH++R ++VP+ TD HLF+ GIKP WEDP+N GG+ +VRL+KG+ASR WE+ +LAI+GE DVGNEICGAV+SVRYSED+I+VWNR+A N E + KIR+++++IL++P F +VEY+RH QD+ N GGG
Sbjct: 34 LLNSQYCFWYMRRGGGERKPSGPTD-YEKSIKQIGEFATVEGFWQLYNHLVRPNEVPHTTDYHLFKSGIKPIWEDPANKMGGKWIVRLRKGIASRYWEAALLAIIGEDIDVGNEICGAVISVRYSEDIIAVWNRNADNVEAVQKIRDALRKILRVPDFAKVEYKRHDTALQDSSSFRNTNVWRGGG 218
BLAST of mRNA_S-dermatodea_contig11776.1126.1 vs. uniprot
Match: A0A6G0XTE8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XTE8_9STRA) HSP 1 Score: 224 bits (572), Expect = 1.110e-66 Identity = 94/168 (55.95%), Postives = 132/168 (78.57%), Query Frame = 1
Query: 352 IQNRYCFWYYRKGAQVKDKDPSDAYESGIKVVESFQTVEHFWRIYNHILRADQVPNATDVHLFRDGIKPTWEDPSNSRGGQLLVRLKKGLASRAWESLVLAIVGEQFDVGNEICGAVVSVRYSEDVISVWNRSASNTEGIDKIRESVKRILKIPSFVQVEYRRHQDNL 855
IQN YCFWY +K + K D ++YE IK + F+TV+ FWR+YNH++R + +PN TD HLF+ GIKP WED +N RGG+ ++R++KG+ASR WE LVLAI+GEQFDVGNEICGAV+S+RY+ED+IS+WNR+A N E +IR++++++L +P FV +EY+RH +L
Sbjct: 22 IQNTYCFWYMKKNSG-KTLDDQESYEKSIKEIGEFRTVQGFWRVYNHLIRPNDLPNTTDYHLFKSGIKPMWEDAANRRGGKWMIRIRKGIASRYWEDLVLAIIGEQFDVGNEICGAVMSIRYNEDIISLWNRNADNNEACYRIRDTMRKLLNLPQFVSLEYKRHDTSL 188
BLAST of mRNA_S-dermatodea_contig11776.1126.1 vs. uniprot
Match: G4YG94_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YG94_PHYSP) HSP 1 Score: 222 bits (566), Expect = 1.600e-66 Identity = 96/174 (55.17%), Postives = 134/174 (77.01%), Query Frame = 1
Query: 334 GVRQTLIQNRYCFWYYRKGAQVKDKDPSDAYESGIKVVESFQTVEHFWRIYNHILRADQVPNATDVHLFRDGIKPTWEDPSNSRGGQLLVRLKKGLASRAWESLVLAIVGEQFDVGNEICGAVVSVRYSEDVISVWNRSASNTEGIDKIRESVKRILKIPSFVQVEYRRHQDNL 855
G +T IQN Y FWY ++ +K S++YE IK + F+TV+ FW+IYNH++R + +PN D HLF+ GIKP WEDP+N RGG+ +VRL+KG+ASR WE LVLAI+GEQFDVGNEICGAV+S+RY+ED+IS+WNR+A N E +IR++++++L +P FV +EY+RH +L
Sbjct: 12 GSAETPIQNMYSFWYIKRSTG--NKAVSESYEKSIKGLGDFKTVQDFWKIYNHLVRPNDLPNTMDYHLFKTGIKPMWEDPANRRGGKWMVRLRKGIASRYWEDLVLAIIGEQFDVGNEICGAVISIRYNEDIISLWNRNADNNEACYRIRDTMRKVLNLPQFVALEYKRHDTSL 183
BLAST of mRNA_S-dermatodea_contig11776.1126.1 vs. uniprot
Match: W4FZB5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FZB5_9STRA) HSP 1 Score: 223 bits (568), Expect = 2.810e-66 Identity = 97/179 (54.19%), Postives = 137/179 (76.54%), Query Frame = 1
Query: 319 PEDTTGVRQTLIQNRYCFWYYRKGAQVKDKDPSDAYESGIKVVESFQTVEHFWRIYNHILRADQVPNATDVHLFRDGIKPTWEDPSNSRGGQLLVRLKKGLASRAWESLVLAIVGEQFDVGNEICGAVVSVRYSEDVISVWNRSASNTEGIDKIRESVKRILKIPSFVQVEYRRHQDNL 855
P DT G + IQN Y FWY +K + K + ++YE IK + F+TV+ FWR+YNH++R + +PN TD HLF+ GIKP WED +N RGG+ ++R++KG+ASR WE LVLAIVGEQFDVGNEICGAV+S+RY+ED+IS+WNR+A N+E +IR++++++L +P FV +EY+RH +L
Sbjct: 11 PVDTAG--EVPIQNTYTFWYMKKNSG-KALEDQESYEKSIKEISEFRTVQGFWRVYNHLIRPNDLPNTTDYHLFKAGIKPMWEDTANRRGGKWMIRIRKGIASRYWEDLVLAIVGEQFDVGNEICGAVMSIRYNEDIISLWNRNADNSEACYRIRDTMRKLLNLPQFVSLEYKRHDTSL 186
BLAST of mRNA_S-dermatodea_contig11776.1126.1 vs. uniprot
Match: D0MYJ6_PHYIT (Eukaryotic initiation factor 4E, putative n=11 Tax=Phytophthora TaxID=4783 RepID=D0MYJ6_PHYIT) HSP 1 Score: 220 bits (560), Expect = 1.470e-65 Identity = 95/174 (54.60%), Postives = 133/174 (76.44%), Query Frame = 1
Query: 334 GVRQTLIQNRYCFWYYRKGAQVKDKDPSDAYESGIKVVESFQTVEHFWRIYNHILRADQVPNATDVHLFRDGIKPTWEDPSNSRGGQLLVRLKKGLASRAWESLVLAIVGEQFDVGNEICGAVVSVRYSEDVISVWNRSASNTEGIDKIRESVKRILKIPSFVQVEYRRHQDNL 855
G +T IQN Y FWY ++ +K S++YE IK + F+TV+ FW+IYNH++R + +PN D HLF+ GIKP WED +N RGG+ +VRL+KG+ASR WE LVLAI+GEQFDVGNEICGAV+S+RY+ED+IS+WNR+A N E +IR++++++L +P FV +EY+RH +L
Sbjct: 18 GTTETPIQNMYTFWYIKRSTG--NKAVSESYEKSIKGLGDFKTVQDFWKIYNHLVRPNDLPNTMDYHLFKTGIKPMWEDSANRRGGKWMVRLRKGIASRYWEDLVLAIIGEQFDVGNEICGAVISIRYNEDIISLWNRNADNNEACYRIRDTMRKVLNLPQFVALEYKRHDTSL 189
BLAST of mRNA_S-dermatodea_contig11776.1126.1 vs. uniprot
Match: A0A7S2SB23_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SB23_9STRA) HSP 1 Score: 223 bits (569), Expect = 2.090e-65 Identity = 108/195 (55.38%), Postives = 142/195 (72.82%), Query Frame = 1
Query: 280 GATGPAYESLYDEPEDTTGVRQTLIQNRYCFWYYRKGAQVKDKDPSDAYESGIKVVESFQTVEHFWRIYNHILRADQVPNATD---VHLFRDGIKPTWEDPSNSRGGQLLVRLKKGLASRAWESLVLAIVGEQFDVGNEICGAVVSVRYSEDVISVWNRSASNTEGIDKIRESVKRILKIPSFVQVEYRRHQDNL 855
G G A + LYDEPED RQT IQNRY FWY ++ + K S +ESG+ SFQTVEHFWRIY+H+ R +P++ LF++GIKPTWEDP+N RGG +RLKKGLASR WE LVLAIVGEQFDVGNEICGA +SVR++ED IS+W+R+A N + +KIR+ ++R+LK+P ++ ++Y+RH + L
Sbjct: 69 GTAGVALKDLYDEPEDLH--RQTPIQNRYVFWYMQRPSS---KTASSDWESGLIDFASFQTVEHFWRIYDHLARPSSLPSSAGQITYDLFKNGIKPTWEDPNNVRGGAWTIRLKKGLASRFWEELVLAIVGEQFDVGNEICGAKLSVRFNEDRISLWHRNADNQDACNKIRDLMRRLLKLPHYIPMDYKRHSEYL 258 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11776.1126.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig11776.1126.1 >prot_S-dermatodea_contig11776.1126.1 ID=prot_S-dermatodea_contig11776.1126.1|Name=mRNA_S-dermatodea_contig11776.1126.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=429bp SGHKRANKEKERESAAWGSPVTHRGLKLSELSGCCPFSWGRSLEGSPRWRback to top mRNA from alignment at S-dermatodea_contig11776:819..7411+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig11776.1126.1 ID=mRNA_S-dermatodea_contig11776.1126.1|Name=mRNA_S-dermatodea_contig11776.1126.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=6593bp|location=Sequence derived from alignment at S-dermatodea_contig11776:819..7411+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig11776:819..7411+ >mRNA_S-dermatodea_contig11776.1126.1 ID=mRNA_S-dermatodea_contig11776.1126.1|Name=mRNA_S-dermatodea_contig11776.1126.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2574bp|location=Sequence derived from alignment at S-dermatodea_contig11776:819..7411+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |