mRNA_S-dermatodea_contig11773.1124.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11773.1124.1
Unique NamemRNA_S-dermatodea_contig11773.1124.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig11773.1124.1 vs. uniprot
Match: A0A6H5J9H9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9H9_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 6.530e-27
Identity = 59/94 (62.77%), Postives = 67/94 (71.28%), Query Frame = 1 
Query:    1 GAPFHRQLRLPLRLTIRGGLRVCSLRVAQFVDGGLSFHSDADATESLLLVELANESAFPIFAWR-----------HRPPASGGSGGVVEDQRAL 249
            GAPFHRQLRLPLRLTIRGGLRVCSLRVAQF+ GGL F  DAD+TE LL++ELAN+SAFP+F WR           HR   + G+ G  ED   L
Sbjct: 1283 GAPFHRQLRLPLRLTIRGGLRVCSLRVAQFLGGGLRFDVDADSTECLLVLELANDSAFPVFPWRSHRAKQKQQGRHRRQLTAGTIGGPEDGGGL 1376
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BLAST of mRNA_S-dermatodea_contig11773.1124.1 vs. uniprot
Match: D8LGF7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGF7_ECTSI)

HSP 1 Score: 63.2 bits (152), Expect = 9.760e-10
Identity = 34/70 (48.57%), Postives = 43/70 (61.43%), Query Frame = 1 
Query:   73 LRVAQFVDGGLSFHSDADATESLLLVELANESAFPIFAWR-----------HRPPASGGSGGVVEDQRAL 249
            + VAQF+ GGLSF  DAD+TE LL++ELAN+SAFP+F WR           HR   + G+ G  ED   L
Sbjct:  558 VEVAQFLGGGLSFDGDADSTECLLVLELANDSAFPVFPWRSHRAKQQQQGRHRRQLTAGTIGGPEDGGGL 627
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11773.1124.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J9H9_9PHAE6.530e-2762.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LGF7_ECTSI9.760e-1048.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11773contigS-dermatodea_contig11773:1875..2638 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size249
Cds size249
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924217.0963464-CDS-S-dermatodea_contig11773:1874..19521622924217.0963464-CDS-S-dermatodea_contig11773:1874..1952Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11773 1875..1952 +
1694079100.0395868-CDS-S-dermatodea_contig11773:1874..19521694079100.0395868-CDS-S-dermatodea_contig11773:1874..1952Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11773 1875..1952 +
1622924217.1059334-CDS-S-dermatodea_contig11773:2467..26381622924217.1059334-CDS-S-dermatodea_contig11773:2467..2638Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11773 2468..2638 +
1694079100.0470676-CDS-S-dermatodea_contig11773:2467..26381694079100.0470676-CDS-S-dermatodea_contig11773:2467..2638Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11773 2468..2638 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11773.1124.1prot_S-dermatodea_contig11773.1124.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11773 1875..2638 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11773.1124.1

>prot_S-dermatodea_contig11773.1124.1 ID=prot_S-dermatodea_contig11773.1124.1|Name=mRNA_S-dermatodea_contig11773.1124.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=83bp
GAPFHRQLRLPLRLTIRGGLRVCSLRVAQFVDGGLSFHSDADATESLLLV
ELANESAFPIFAWRHRPPASGGSGGVVEDQRAL
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mRNA from alignment at S-dermatodea_contig11773:1875..2638+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11773.1124.1 ID=mRNA_S-dermatodea_contig11773.1124.1|Name=mRNA_S-dermatodea_contig11773.1124.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=764bp|location=Sequence derived from alignment at S-dermatodea_contig11773:1875..2638+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGGGCGCCGTTCCACAGACAGCTTAGGCTTCCGCTTCGTCTCACCATCCG
GGGGGGGCTGCGTGTCTGCAGCTTGAGGGTGAGATGATAGCTGCCAATCA
ATGAAGCGAGGGAGGGCGGCGAGGAGAGCGAATTATTCGTCAATTTGTTT
TCCTTTTTTTTGTTGTGGTATCTCTTTTTGTGTGTGTGATACGTATGGTT
CTTATTTTTTCACCTGCATATAGAGCTCTACAAACTCAAACCAGTTGTAG
AGTCAGAAGATTACTATTTTTATTTTTTTTCCTTTCCTCACTCCTCATCA
ACGGTACGTCTGTACAGTATAGCTCTATATAATTTTTTGTTCGATATCTT
CATGTTTCAAATTTTCACGAGTTTTTCGCTTCGTTTTCCTATTGTCTCTT
GATCGATCGATCGATCTCGTGACCCACCTTTTGTTTTTTGAGGTACTAAA
TCAGTCAACGTGGGACCCATCATCACCATCATCACGCACACACACACACA
CACACACACACACACACACACACACACACACACACACACACACACACACA
CATATAAACACCCCCCTCCCCCCAAACGAAACCCGAACCCCAGGTGGCCC
AGTTCGTGGACGGCGGCCTCAGCTTCCACTCCGACGCGGATGCCACCGAG
AGCCTCCTCCTTGTCGAGCTCGCCAACGAAAGCGCTTTCCCTATCTTCGC
GTGGCGCCACAGACCACCCGCGTCTGGCGGCAGCGGCGGCGTTGTCGAAG
ATCAGCGGGCGCTC
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Coding sequence (CDS) from alignment at S-dermatodea_contig11773:1875..2638+

>mRNA_S-dermatodea_contig11773.1124.1 ID=mRNA_S-dermatodea_contig11773.1124.1|Name=mRNA_S-dermatodea_contig11773.1124.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=498bp|location=Sequence derived from alignment at S-dermatodea_contig11773:1875..2638+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGGGCGCCGTTCCACAGACAGCTTAGGCTTCCGCTTCGTCTCACCATCCG
GGGGGGGCTGCGTGTCTGCAGCTTGAGGGGGGCGCCGTTCCACAGACAGC
TTAGGCTTCCGCTTCGTCTCACCATCCGGGGGGGGCTGCGTGTCTGCAGC
TTGAGGGTGGCCCAGTTCGTGGACGGCGGCCTCAGCTTCCACTCCGACGC
GGATGCCACCGAGAGCCTCCTCCTTGTCGAGCTCGCCAACGAAAGCGCTT
TCCCTATCTTCGCGTGGCGCCACAGACCACCCGCGTCTGGCGGCAGCGGC
GGCGTTGTCGAAGATCAGCGGGCGCTCGTGGCCCAGTTCGTGGACGGCGG
CCTCAGCTTCCACTCCGACGCGGATGCCACCGAGAGCCTCCTCCTTGTCG
AGCTCGCCAACGAAAGCGCTTTCCCTATCTTCGCGTGGCGCCACAGACCA
CCCGCGTCTGGCGGCAGCGGCGGCGTTGTCGAAGATCAGCGGGCGCTC
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