mRNA_S-dermatodea_contig11771.1121.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11771.1121.1
Unique NamemRNA_S-dermatodea_contig11771.1121.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig11771.1121.1 vs. uniprot
Match: D7G3D1_ECTSI (Rad21_Rec8_N domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3D1_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 2.540e-19
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 1 
Query:    1 MFYSQIILAKKGPLGKIWIAAHWDKKLNKAQIFQTNINTSV 123
            MFYSQIILAKKGPLGKIWIAAHWDKKLNKAQIFQTNINTSV
Sbjct:    1 MFYSQIILAKKGPLGKIWIAAHWDKKLNKAQIFQTNINTSV 41
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BLAST of mRNA_S-dermatodea_contig11771.1121.1 vs. uniprot
Match: A0A7R9Y943_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9Y943_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 4.520e-16
Identity = 35/41 (85.37%), Postives = 40/41 (97.56%), Query Frame = 1 
Query:    1 MFYSQIILAKKGPLGKIWIAAHWDKKLNKAQIFQTNINTSV 123
            MFYSQ+ILAKKGPLGKIW+AAHWDKKL KAQIFQT+I++SV
Sbjct:    1 MFYSQLILAKKGPLGKIWLAAHWDKKLTKAQIFQTDISSSV 41
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BLAST of mRNA_S-dermatodea_contig11771.1121.1 vs. uniprot
Match: A0A2P4XFU8_9STRA (Double-strand-break repair protein rad21 n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XFU8_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 1.540e-15
Identity = 35/41 (85.37%), Postives = 38/41 (92.68%), Query Frame = 1 
Query:    1 MFYSQIILAKKGPLGKIWIAAHWDKKLNKAQIFQTNINTSV 123
            MFYSQIILAKKGPLGKIW+AAHWDKKLNK QIF  +I+TSV
Sbjct:    1 MFYSQIILAKKGPLGKIWLAAHWDKKLNKQQIFTADIHTSV 41
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BLAST of mRNA_S-dermatodea_contig11771.1121.1 vs. uniprot
Match: A0A2P4YM93_9STRA (Double-strand-break repair protein rad21 n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YM93_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 1.570e-15
Identity = 35/41 (85.37%), Postives = 38/41 (92.68%), Query Frame = 1 
Query:    1 MFYSQIILAKKGPLGKIWIAAHWDKKLNKAQIFQTNINTSV 123
            MFYSQIILAKKGPLGKIW+AAHWDKKLNK QIF  +I+TSV
Sbjct:  185 MFYSQIILAKKGPLGKIWLAAHWDKKLNKQQIFTADIHTSV 225
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BLAST of mRNA_S-dermatodea_contig11771.1121.1 vs. uniprot
Match: A0A7S2S5L9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S5L9_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 2.150e-15
Identity = 35/41 (85.37%), Postives = 37/41 (90.24%), Query Frame = 1 
Query:    1 MFYSQIILAKKGPLGKIWIAAHWDKKLNKAQIFQTNINTSV 123
            MFYSQIILAKKGPLGKIW+AAHWDKKL K QIFQT+I  SV
Sbjct:    1 MFYSQIILAKKGPLGKIWLAAHWDKKLTKVQIFQTDIERSV 41
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BLAST of mRNA_S-dermatodea_contig11771.1121.1 vs. uniprot
Match: A0A662XSX1_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XSX1_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 5.470e-15
Identity = 34/41 (82.93%), Postives = 38/41 (92.68%), Query Frame = 1 
Query:    1 MFYSQIILAKKGPLGKIWIAAHWDKKLNKAQIFQTNINTSV 123
            MFYSQIILAKKGPLGKIW+AAHWDKKLNK QIF  +I++SV
Sbjct:    1 MFYSQIILAKKGPLGKIWLAAHWDKKLNKQQIFTADIHSSV 41
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BLAST of mRNA_S-dermatodea_contig11771.1121.1 vs. uniprot
Match: A0A225X301_9STRA (Double-strand-break repair protein rad21 n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225X301_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 5.480e-15
Identity = 34/41 (82.93%), Postives = 38/41 (92.68%), Query Frame = 1 
Query:    1 MFYSQIILAKKGPLGKIWIAAHWDKKLNKAQIFQTNINTSV 123
            MFYSQIILAKKGPLGKIW+AAHWDKKLNK QIF  +I++SV
Sbjct:    1 MFYSQIILAKKGPLGKIWLAAHWDKKLNKQQIFTADIHSSV 41
[Close]
BLAST of mRNA_S-dermatodea_contig11771.1121.1 vs. uniprot
Match: H3GTZ6_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GTZ6_PHYRM)

HSP 1 Score: 75.9 bits (185), Expect = 5.480e-15
Identity = 34/41 (82.93%), Postives = 38/41 (92.68%), Query Frame = 1 
Query:    1 MFYSQIILAKKGPLGKIWIAAHWDKKLNKAQIFQTNINTSV 123
            MFYSQIILAKKGPLGKIW+AAHWDKKLNK QIF  +I++SV
Sbjct:    1 MFYSQIILAKKGPLGKIWLAAHWDKKLNKQQIFTADIHSSV 41
[Close]
BLAST of mRNA_S-dermatodea_contig11771.1121.1 vs. uniprot
Match: A0A6A3TN23_9STRA (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3TN23_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 5.480e-15
Identity = 34/41 (82.93%), Postives = 38/41 (92.68%), Query Frame = 1 
Query:    1 MFYSQIILAKKGPLGKIWIAAHWDKKLNKAQIFQTNINTSV 123
            MFYSQIILAKKGPLGKIW+AAHWDKKLNK QIF  +I++SV
Sbjct:    1 MFYSQIILAKKGPLGKIWLAAHWDKKLNKQQIFTADIHSSV 41
[Close]
BLAST of mRNA_S-dermatodea_contig11771.1121.1 vs. uniprot
Match: A0A0P1B0L1_PLAHL (Double-strand-break repair protein rad21 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B0L1_PLAHL)

HSP 1 Score: 75.9 bits (185), Expect = 5.480e-15
Identity = 34/41 (82.93%), Postives = 38/41 (92.68%), Query Frame = 1 
Query:    1 MFYSQIILAKKGPLGKIWIAAHWDKKLNKAQIFQTNINTSV 123
            MFYSQIILAKKGPLGKIW+AAHWDKKLNK QIF  +I++SV
Sbjct:    1 MFYSQIILAKKGPLGKIWLAAHWDKKLNKQQIFTADIHSSV 41
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11771.1121.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3D1_ECTSI2.540e-19100.00Rad21_Rec8_N domain-containing protein n=2 Tax=Ect... [more]
A0A7R9Y943_9STRA4.520e-1685.37Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A2P4XFU8_9STRA1.540e-1585.37Double-strand-break repair protein rad21 n=1 Tax=P... [more]
A0A2P4YM93_9STRA1.570e-1585.37Double-strand-break repair protein rad21 n=1 Tax=P... [more]
A0A7S2S5L9_9STRA2.150e-1585.37Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A662XSX1_9STRA5.470e-1582.93Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A225X301_9STRA5.480e-1582.93Double-strand-break repair protein rad21 n=1 Tax=P... [more]
H3GTZ6_PHYRM5.480e-1582.93Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A6A3TN23_9STRA5.480e-1582.93Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]
A0A0P1B0L1_PLAHL5.480e-1582.93Double-strand-break repair protein rad21 n=1 Tax=P... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11771contigS-dermatodea_contig11771:1248..1370 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score89.4
Seed ortholog evalue4.4e-16
Seed eggNOG ortholog2880.D7G3D1
Preferred nameRAD21L1
KEGG koko:K06670
KEGG Pathwayko04110,ko04111,map04110,map04111
GOsGO:0000003,GO:0000070,GO:0000228,GO:0000278,GO:0000280,GO:0000724,GO:0000725,GO:0000775,GO:0000785,GO:0000792,GO:0000793,GO:0000794,GO:0000795,GO:0000798,GO:0000800,GO:0000819,GO:0000981,GO:0001228,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003684,GO:0003700,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005700,GO:0005705,GO:0005721,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006351,GO:0006355,GO:0006357,GO:0006366,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007063,GO:0007064,GO:0007088,GO:0007127,GO:0007129,GO:0007130,GO:0007131,GO:0007275,GO:0007276,GO:0007283,GO:0007346,GO:0007399,GO:0007548,GO:0008104,GO:0008150,GO:0008152,GO:0008278,GO:0008406,GO:0008584,GO:0009058,GO:0009059,GO:0009566,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010389,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010564,GO:0010604,GO:0010628,GO:0010638,GO:0010639,GO:0010948,GO:0010965,GO:0010972,GO:0016043,GO:0016070,GO:0016322,GO:0016363,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019953,GO:0021700,GO:0022008,GO:0022402,GO:0022414,GO:0022607,GO:0030071,GO:0030154,GO:0030182,GO:0030893,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032774,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033045,GO:0033046,GO:0033047,GO:0033048,GO:0033365,GO:0033554,GO:0034397,GO:0034398,GO:0034399,GO:0034502,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0034991,GO:0035295,GO:0035825,GO:0042551,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044703,GO:0044821,GO:0044877,GO:0045132,GO:0045137,GO:0045141,GO:0045143,GO:0045786,GO:0045787,GO:0045839,GO:0045841,GO:0045876,GO:0045893,GO:0045930,GO:0045935,GO:0045944,GO:0046483,GO:0046546,GO:0046661,GO:0048232,GO:0048285,GO:0048468,GO:0048469,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048608,GO:0048609,GO:0048666,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050000,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051252,GO:0051254,GO:0051276,GO:0051303,GO:0051321,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0051704,GO:0051716,GO:0051726,GO:0051783,GO:0051784,GO:0051983,GO:0051984,GO:0051985,GO:0060255,GO:0061458,GO:0061982,GO:0065007,GO:0070013,GO:0070192,GO:0070193,GO:0070197,GO:0070727,GO:0071168,GO:0071695,GO:0071704,GO:0071840,GO:0072520,GO:0080090,GO:0090068,GO:0090220,GO:0090304,GO:0097159,GO:0097240,GO:0097659,GO:0098687,GO:0098813,GO:0099086,GO:0140013,GO:0140014,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902099,GO:1902100,GO:1902680,GO:1902749,GO:1902750,GO:1903046,GO:1903047,GO:1903506,GO:1903508,GO:1905818,GO:1905819,GO:2000112,GO:2000816,GO:2001141,GO:2001251,GO:2001252
EggNOG free text desc.sister chromatid cohesion
EggNOG OGsKOG1213@1,KOG1213@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size123
Cds size123
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924216.9625933-CDS-S-dermatodea_contig11771:1247..13701622924216.9625933-CDS-S-dermatodea_contig11771:1247..1370Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11771 1248..1370 -
1694079099.9768445-CDS-S-dermatodea_contig11771:1247..13701694079099.9768445-CDS-S-dermatodea_contig11771:1247..1370Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11771 1248..1370 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11771.1121.1prot_S-dermatodea_contig11771.1121.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11771 1248..1370 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11771.1121.1

>prot_S-dermatodea_contig11771.1121.1 ID=prot_S-dermatodea_contig11771.1121.1|Name=mRNA_S-dermatodea_contig11771.1121.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=41bp
MFYSQIILAKKGPLGKIWIAAHWDKKLNKAQIFQTNINTSV
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mRNA from alignment at S-dermatodea_contig11771:1248..1370-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11771.1121.1 ID=mRNA_S-dermatodea_contig11771.1121.1|Name=mRNA_S-dermatodea_contig11771.1121.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=123bp|location=Sequence derived from alignment at S-dermatodea_contig11771:1248..1370- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTTTTACTCCCAGATCATCCTCGCGAAGAAGGGCCCTTTGGGCAAGAT
TTGGATCGCGGCGCATTGGGACAAGAAGCTGAACAAGGCGCAGATCTTCC
AGACCAACATCAACACCTCTGTC
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Coding sequence (CDS) from alignment at S-dermatodea_contig11771:1248..1370-

>mRNA_S-dermatodea_contig11771.1121.1 ID=mRNA_S-dermatodea_contig11771.1121.1|Name=mRNA_S-dermatodea_contig11771.1121.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=246bp|location=Sequence derived from alignment at S-dermatodea_contig11771:1248..1370- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTTTTACTCCCAGATCATCCTCGCGAAGAAGGGCCCTTTGGGCAAGAT
TTGGATCGCGGCGCATTGGGACAAGAAGCTGAACAAGGCGCAGATCTTCC
AGACCAACATCAACACCTCTGTCATGTTTTACTCCCAGATCATCCTCGCG
AAGAAGGGCCCTTTGGGCAAGATTTGGATCGCGGCGCATTGGGACAAGAA
GCTGAACAAGGCGCAGATCTTCCAGACCAACATCAACACCTCTGTC
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