mRNA_S-dermatodea_contig11769.1115.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11769.1115.1
Unique NamemRNA_S-dermatodea_contig11769.1115.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11769.1115.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11769contigS-dermatodea_contig11769:5377..5837 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size461
Cds size363
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924216.5460463-CDS-S-dermatodea_contig11769:5376..57391622924216.5460463-CDS-S-dermatodea_contig11769:5376..5739Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11769 5377..5739 +
1694079099.6969168-CDS-S-dermatodea_contig11769:5376..57391694079099.6969168-CDS-S-dermatodea_contig11769:5376..5739Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11769 5377..5739 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924216.5576773-UTR-S-dermatodea_contig11769:5739..58371622924216.5576773-UTR-S-dermatodea_contig11769:5739..5837Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11769 5740..5837 +
1694079099.7226937-UTR-S-dermatodea_contig11769:5739..58371694079099.7226937-UTR-S-dermatodea_contig11769:5739..5837Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11769 5740..5837 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11769.1115.1prot_S-dermatodea_contig11769.1115.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11769 5377..5739 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11769.1115.1

>prot_S-dermatodea_contig11769.1115.1 ID=prot_S-dermatodea_contig11769.1115.1|Name=mRNA_S-dermatodea_contig11769.1115.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=121bp
MQPCLQHTRLARNCTVQMVCVWRSPHSSDLVNVIVTIYFSAENRLFSLKT
SQKGLKKTTKKKKKRSRNKTERISTPRRLSLARVYRCLAGKLSYCCYFPP
IFCVSLHAAMSSSRSTSATV*
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mRNA from alignment at S-dermatodea_contig11769:5377..5837+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11769.1115.1 ID=mRNA_S-dermatodea_contig11769.1115.1|Name=mRNA_S-dermatodea_contig11769.1115.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=461bp|location=Sequence derived from alignment at S-dermatodea_contig11769:5377..5837+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCAACCCTGCCTTCAACACACACGCTTGGCTCGCAATTGCACGGTGCA
GATGGTTTGCGTGTGGCGGTCACCACATTCCTCGGATCTAGTGAACGTCA
TAGTGACGATATACTTCTCGGCGGAAAACAGGCTCTTCTCACTCAAAACG
TCACAAAAAGGTCTAAAAAAAACTACAAAAAAAAAGAAAAAAAGATCTCG
CAACAAAACCGAGAGAATCTCCACACCCCGTCGCCTCTCTCTCGCGCGCG
TCTACAGGTGCTTAGCGGGAAAACTCTCTTATTGCTGTTACTTTCCTCCG
ATATTTTGTGTTTCCCTGCATGCAGCGATGAGCAGCAGCCGAAGCACCTC
CGCAACCGTCTAATTCTCCGCGCAGCACCCCCCCCCCCCTCGGGCGTGCT
GAGAACGCTATTTTTTGTGTAGCATGAGGCACCGGTCGCTTCTTGTTCGC
TCGCACCATCT
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Coding sequence (CDS) from alignment at S-dermatodea_contig11769:5377..5837+

>mRNA_S-dermatodea_contig11769.1115.1 ID=mRNA_S-dermatodea_contig11769.1115.1|Name=mRNA_S-dermatodea_contig11769.1115.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=726bp|location=Sequence derived from alignment at S-dermatodea_contig11769:5377..5837+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCAACCCTGCCTTCAACACACACGCTTGGCTCGCAATTGCACGGTGCA
GATGGTTTGCGTGTGGCGGTCACCACATTCCTCGGATCTAGTGAACGTCA
TAGTGACGATATACTTCTCGGCGGAAAACAGGCTCTTCTCACTCAAAACG
TCACAAAAAGGTCTAAAAAAAACTACAAAAAAAAAGAAAAAAAGATCTCG
CAACAAAACCGAGAGAATCTCCACACCCCGTCGCCTCTCTCTCGCGCGCG
TCTACAGGTGCTTAGCGGGAAAACTCTCTTATTGCTGTTACTTTCCTCCG
ATATTTTGTGTTTCCCTGCATGCAGCGATGAGCAGCAGCCGAAGCACCTC
CGCAACCGTCTAAATGCAACCCTGCCTTCAACACACACGCTTGGCTCGCA
ATTGCACGGTGCAGATGGTTTGCGTGTGGCGGTCACCACATTCCTCGGAT
CTAGTGAACGTCATAGTGACGATATACTTCTCGGCGGAAAACAGGCTCTT
CTCACTCAAAACGTCACAAAAAGGTCTAAAAAAAACTACAAAAAAAAAGA
AAAAAAGATCTCGCAACAAAACCGAGAGAATCTCCACACCCCGTCGCCTC
TCTCTCGCGCGCGTCTACAGGTGCTTAGCGGGAAAACTCTCTTATTGCTG
TTACTTTCCTCCGATATTTTGTGTTTCCCTGCATGCAGCGATGAGCAGCA
GCCGAAGCACCTCCGCAACCGTCTAA
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