mRNA_S-dermatodea_contig11764.1114.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11764.1114.1
Unique NamemRNA_S-dermatodea_contig11764.1114.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11764.1114.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11764contigS-dermatodea_contig11764:2237..6848 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size735
Cds size690
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11764.1114.1prot_S-dermatodea_contig11764.1114.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11764 2274..6840 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924216.4591727-UTR-S-dermatodea_contig11764:2236..22731622924216.4591727-UTR-S-dermatodea_contig11764:2236..2273Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11764 2237..2273 -
1694079099.6294043-UTR-S-dermatodea_contig11764:2236..22731694079099.6294043-UTR-S-dermatodea_contig11764:2236..2273Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11764 2237..2273 -
1622924216.507818-UTR-S-dermatodea_contig11764:6840..68481622924216.507818-UTR-S-dermatodea_contig11764:6840..6848Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11764 6841..6848 -
1694079099.6853456-UTR-S-dermatodea_contig11764:6840..68481694079099.6853456-UTR-S-dermatodea_contig11764:6840..6848Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11764 6841..6848 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924216.4691703-CDS-S-dermatodea_contig11764:2273..25971622924216.4691703-CDS-S-dermatodea_contig11764:2273..2597Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11764 2274..2597 -
1694079099.64556-CDS-S-dermatodea_contig11764:2273..25971694079099.64556-CDS-S-dermatodea_contig11764:2273..2597Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11764 2274..2597 -
1622924216.478255-CDS-S-dermatodea_contig11764:5123..52741622924216.478255-CDS-S-dermatodea_contig11764:5123..5274Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11764 5124..5274 -
1694079099.6574612-CDS-S-dermatodea_contig11764:5123..52741694079099.6574612-CDS-S-dermatodea_contig11764:5123..5274Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11764 5124..5274 -
1622924216.487217-CDS-S-dermatodea_contig11764:6379..64981622924216.487217-CDS-S-dermatodea_contig11764:6379..6498Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11764 6380..6498 -
1694079099.6668673-CDS-S-dermatodea_contig11764:6379..64981694079099.6668673-CDS-S-dermatodea_contig11764:6379..6498Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11764 6380..6498 -
1622924216.4958217-CDS-S-dermatodea_contig11764:6744..68401622924216.4958217-CDS-S-dermatodea_contig11764:6744..6840Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11764 6745..6840 -
1694079099.6762097-CDS-S-dermatodea_contig11764:6744..68401694079099.6762097-CDS-S-dermatodea_contig11764:6744..6840Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11764 6745..6840 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11764.1114.1

>prot_S-dermatodea_contig11764.1114.1 ID=prot_S-dermatodea_contig11764.1114.1|Name=mRNA_S-dermatodea_contig11764.1114.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=230bp
MFDEHMAMLKEKMAKKAARQEQMRLEREAKRKEREDREREERERRKRGRS
SSRSYSDSRSRSRSRGSSRSDRSRSRSVSRSRSFDSRDRKHHSHKKSKKR
HRSRSPDSPYPAYPTSAEKHKKDKKKSKKAKKEKKEKREREKESHKDKER
HQDKDKEPPASKPDKAQDVSRKESIESADEEGQVVPTKRPRVDGEAEEGD
APEAEGGRSRGRRAHEATEENGGGSGGPL*
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mRNA from alignment at S-dermatodea_contig11764:2237..6848-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11764.1114.1 ID=mRNA_S-dermatodea_contig11764.1114.1|Name=mRNA_S-dermatodea_contig11764.1114.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4612bp|location=Sequence derived from alignment at S-dermatodea_contig11764:2237..6848- (Saccorhiza dermatodea SderLu1190fm monoicous)
GCAAGCGCATGTTCGACGAGCACATGGCGATGCTGAAGGAGAAGATGGCC
AAGAAGGCCGCCCGTCAGGAGCAGATGCGCCTCGAGCGAGAGGCGAAGCG
CAAGGTAACAACAGGCCGAAGTTGGGACAAAATGGTTTTACGGTATTCTA
CAGAGCTCACCCGGCACGTTTTGGCATGATGTAGCGGAGGTTTTGTCGAG
CGTGGTACGTAGGATCGGAGGGAGGTAGGAGACAAATGCATCAACATTTC
ACGTGTTTTCATATCCCGAGGCTGATGACCTACCCATCATTTGAGCCTGG
AGCAACACCGCACTCACCGCTCTTTTGCCCCTCGAACACAACCGACTCAG
GAGCGTGAGGACCGCGAGAGGGAGGAGCGCGAGAGGCGCAAGCGCGGACG
TTCCTCGTCCAGGTCCTACTCGGACTCGAGGTCCAGGTCTCGCTCTCGCG
GCAGCAGCAGGAGTGATCGGTGAGTGATCGGTGAGGGGGCGTGCTCTTAG
CTGCGAAGTGCAGGGACGACCTCCTCGAACTTGCTCGTGTTGTGTCGTGT
GTGCGTGGTGTTTTTGTTTTTGTGTTTTTTTTCCGGCTTTTTTGGGACAT
GGCAGAGTGCAGTTTTAGTTGATTTTAGTTTACTTTTTACACCAAACTTA
TTTTTACATAGCACAGAACCACCCGAGCCATGTGGACTGTGCGCGGTGGG
TAGGAGCGGATCAATCGTACCACATCTCCCCGGAGCCAGCCTAGATTTTT
TTATCGCGCATGAGGGGCAGCCATTTCCCTTGTATCTCTATTTACTGTTT
ACTATTTACTGTACGGAGTTTACACAGTAACCAGGACCGAATTTGTGTTA
CATGGCATGTTCAAGGTTTATTTTTTCCGTGGCAGGTCTGTCATAACTTT
CACACCTCGTCTACGGCGAACAGTACATAGTCTATATGTAGTCTATAGTC
TGTAGTATGTAGTCCCCAATATTGCAACCTGCGCGTCGGGGAAAACGTTG
GGCGTGAATACCTGGGCTCGCCGGTTGCGCACGTGCGTACAATTGCGAGA
CTGCCCACTCCCAAAAAGGTTACGTGTACCAGTTATATGTATTATTACAG
GATAACTAATTAAAAGCGCTTTGACCGATTTTAAATGGCGATTTTAGGGA
ACGATATGGTGTTACCGGAATCCTATAGGAAAAAGTGACGCCAAACAACT
TGATGTTTGTTTTGAGCACCAAGTGTTGAAAAGACTACGGTAGGATTTTT
CACCTCAAGGGCGTAGCCGTGGCTATTAACACTATTAACACTATTAACAC
CTACTATTAATAGTAAGGCAATGAAATAACAGGGAACCGCTTTGTTTTCC
GCGCTGGATTGCGAGCCCCAACTCCCCACCCCCCCCCACCCCCCCGTGTC
GTTGGGACCTCCGCGTCGCCCGCGCCGGCAGCGCACCACANNNNNNNNNN
AAAAAATAAAACTAAACACCCCCCATATTTAAAAAAAAGAAAAAAAAAAA
ACAAGCACCCCTTTTTTTTTCCCCCCTGTTTCCCCCCCCCCCCCCCCCCC
CGCCCCCCCCGTGTGTTCTGGCAGGTCTCGGTCTCGCTCCGTGTCGAGGT
CGAGATCCTTCGACTCTCGCGACCGCAAGCACCACAGCCACAAGAAGTCC
AAGAAGAGGCACAGGAGCCGCTCGCCCGACTCGCCCTACCCGGCCTACCC
CACGTCCGCTGAAAAACACAAGAAGGTGACAATTATGATTATTACTGTAG
GTATGATACCATTTCTCGTGCGATGGTTCTGTGGGCCACGGCTGCGTTGT
CGGCCACGCGTTGTCTCTGTTAGTTAATACCGCTTTAGTCGTGCTTTCCA
CACTATTTCCTATACGATTGTTGAGGCCGCTCTAAACACTGAATCCTACA
CGATTTTGGGGCCGATATTGTACACAAAACTCCTGTACGATTTGAGGCCA
AAGAACTTGATGTTTGTGTTGAGCGCCAAGTGTTGAAATAGTATATAGGA
TTTTTCATCTCACGGGCGTAGCCGTCGCTTATAGTGCCAACAAGTAGTAA
TTTTTTAATGTACGCATCTCATCTGACCACGAGCGGGATCGGCATATTAT
TTTACATTACAACTATTTATATTACAAGTAAGGTTTACATTATATTCCAT
CATATCACATTATAGACCACAAGTCGGGTCGGATTAAGCTAACGGCTCTA
CGTGCGCAAATCGATCAATCCGTATCATAATATGTTATCATATCAGGTAT
CATACTGTCTGTTGGCTATCATACATTTACCGTTGCGACCATGGCTGAAT
TAAGATATCAGTATATTTAAGAATAATCAACACAACAATTATCAGTCCAG
CGCCAGAAATGGGTGCGAAGGAGAGACCAAACGCGTTGCAAGGAGCGGTC
GAAAAAAGCCACGAGTATCATATACTTGTATTAATAGTACATACCAGGTA
ATACATACTGTGTTGTACGCTTCCTCTGCCACGAAGTCGCGCTCAAAGTC
CGCAGTTTTGTTGCGGCTTGTTTGATTCCTGCCCTCCCCGCGTTTGAACC
AACACGCTCCTTTTCCGAGTAACTTTTCTGCGTTTGCCCTAACCTTAGCG
CTGATCTGGAAGTGTCGTGACCTCTGTTCTAATCTGTTTAGACCTAGTGG
GCAGCCACGGCTACGCTGGTTGGTAGGCGCGGTGGTTGTACGACCCCCGG
CAGGCGGGCTGCTACGCTCGCCGAACGTCGTGCTGTATGGTATGCCATGA
GAAAGAAAGTGGCCTCGAAAGCTTGATTGGTATGTACTGTAGATGAGAGT
ACATACTGTAGGCTAAATACTCTAAAATTTGTCGAGAGGAACAAAGCGTG
CAAAACAGTAAAGAAATAAAAAATAAAGTTTAAAACCATGTACAGTAGAA
CAACAACACACAAGAATACGAATGATCCGAAAACCGACATACAAATCTCA
GTTGCGGAATGATTTGACATACGATAGCGATAGCCACCAATCAAAAGATT
CAAAAGATGCTATGATACCGTCTGGAATCCATCGTCAGGTGTCGTTGTAC
TAATAGGTACGGGGATTCTTCGCCTGGGGCTGGCTCTGGGTTAGTTTTCA
TCTATTGATAGTCGTGTGTGTGGATGCCCGCTTTTGGCGGAATCTTCCGT
GTGTACCTTATTACTATACATTATGTACCTTCTGTACCTCTTTTGCGACC
ACTAGGGGGATCGCAGTGGAGAGGCCGATCGGCTGGCTTTATGATATGTC
TCGCAATAATAATACTGTCGGGGTGACCCCCTTCGTTCTGGCTCGCTGGG
GCTGATATGCTTATGATACTATTAATAACTTTCTATTGCGGAGGACTATA
CCATAGTTAACTTGAACAGGTCCAAATTTGCCACAAACCTCAACCTAGAA
CAACGAGAATAGGCCGGAATTATCGAGATTTCAAGGTCGATGTTCTTGAA
TATGGCCATATCTCGTGTTTTTGTGTTTTTTATGAGATTTTTGTTGTATT
CATGGTCGGAATAGTTGGGTATTATTAATAGTATTATTAATAGTATTATT
AATAGTATTATTAATAGTATTATGAGATTTTGACCTGTTAACTGTCTTCC
TCCGTAATAGTACTGTTTTATAACATTATAACATTATAGCTAAACACACA
TGATAGACTTGCTTTTCCGAGGTCCGTCTGGGGTCACGAAGGGATCATCC
CATCTCTCATCTTATCTTATCCCCGGTTCTTACCTTAAATTTTTATCGCG
CATTGGGCTCGACACTCCCTCAGCCCGCCGTTTTTTTTTATCTTTTTGCT
TACTCGCGCTGTCGCGCTTTCCGCAGCGGAGGCAAGAGACTATACATAAC
TATCGGCCCTGCCCGGATTAGAACCCGGGTCCTCCCTCCGCCTTTTGGAC
GTTGGTGTACCAGTTTAACCACGAGGCGCAATGGCTCTCTATTAATATAA
TACTTCGTATAATATAATATAATATAACATAATGTACTATTAATAGATGG
GACGCGGTGAAAGGGGATACCTTTTGGGTGTAGTTTTAACACAACGTTTA
GCAAAGGTCGAGGAGTATTGTGTATGACATGGGGCGACACGCGACCCCTG
GAGGTCGGGCATCAACCCAGACATGCCTGATTATCTCCGATGGTCATGGA
CGTGTCATAGTCCAGTGACCTGACGTGTCAAGACTCACATTGCTAATAAC
AAATTTGATCATGGTCGTGCTCACGCTCCTTCTCCTCCTGTCCCTTCTCA
GGACAAGAAAAAGTCGAAGAAGGCAAAGAAAGAGAAGAAGGAAAAACGCG
AGAGGGAAAAGGAGAGCCACAAGGACAAGGAGCGTCACCAAGACAAGGAC
AAGGAGCCCCCCGCCTCCAAGCCCGACAAGGCGCAAGACGTGTCCCGTAA
GGAGTCGATCGAATCCGCGGACGAAGAGGGCCAGGTGGTCCCGACCAAGC
GGCCACGCGTCGACGGAGAAGCGGAGGAGGGCGACGCGCCGGAAGCAGAG
GGAGGGCGGAGCAGGGGACGAAGGGCGCACGAGGCGACTGAAGAAAACGG
GGGTGGTAGCGGCGGCCCATTGTGAGCATCGTCGTTAGGGCTATTGGTCG
GGCTGGGAGGGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig11764:2237..6848-

>mRNA_S-dermatodea_contig11764.1114.1 ID=mRNA_S-dermatodea_contig11764.1114.1|Name=mRNA_S-dermatodea_contig11764.1114.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1380bp|location=Sequence derived from alignment at S-dermatodea_contig11764:2237..6848- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTTCGACGAGCACATGGCGATGCTGAAGGAGAAGATGGCCAAGAAGGC
CGCCCGTCAGGAGCAGATGCGCCTCGAGCGAGAGGCGAAGCGCAAGATGT
TCGACGAGCACATGGCGATGCTGAAGGAGAAGATGGCCAAGAAGGCCGCC
CGTCAGGAGCAGATGCGCCTCGAGCGAGAGGCGAAGCGCAAGGAGCGTGA
GGACCGCGAGAGGGAGGAGCGCGAGAGGCGCAAGCGCGGACGTTCCTCGT
CCAGGTCCTACTCGGACTCGAGGTCCAGGTCTCGCTCTCGCGGCAGCAGC
AGGAGTGATCGGAGCGTGAGGACCGCGAGAGGGAGGAGCGCGAGAGGCGC
AAGCGCGGACGTTCCTCGTCCAGGTCCTACTCGGACTCGAGGTCCAGGTC
TCGCTCTCGCGGCAGCAGCAGGAGTGATCGGTCTCGGTCTCGCTCCGTGT
CGAGGTCGAGATCCTTCGACTCTCGCGACCGCAAGCACCACAGCCACAAG
AAGTCCAAGAAGAGGCACAGGAGCCGCTCGCCCGACTCGCCCTACCCGGC
CTACCCCACGTCCGCTGAAAAACACAAGAAGGTCTCGGTCTCGCTCCGTG
TCGAGGTCGAGATCCTTCGACTCTCGCGACCGCAAGCACCACAGCCACAA
GAAGTCCAAGAAGAGGCACAGGAGCCGCTCGCCCGACTCGCCCTACCCGG
CCTACCCCACGTCCGCTGAAAAACACAAGAAGGACAAGAAAAAGTCGAAG
AAGGCAAAGAAAGAGAAGAAGGAAAAACGCGAGAGGGAAAAGGAGAGCCA
CAAGGACAAGGAGCGTCACCAAGACAAGGACAAGGAGCCCCCCGCCTCCA
AGCCCGACAAGGCGCAAGACGTGTCCCGTAAGGAGTCGATCGAATCCGCG
GACGAAGAGGGCCAGGTGGTCCCGACCAAGCGGCCACGCGTCGACGGAGA
AGCGGAGGAGGGCGACGCGCCGGAAGCAGAGGGAGGGCGGAGCAGGGGAC
GAAGGGCGCACGAGGCGACTGAAGAAAACGGGGGTGGTAGCGGCGGCCCA
TTGTGAGACAAGAAAAAGTCGAAGAAGGCAAAGAAAGAGAAGAAGGAAAA
ACGCGAGAGGGAAAAGGAGAGCCACAAGGACAAGGAGCGTCACCAAGACA
AGGACAAGGAGCCCCCCGCCTCCAAGCCCGACAAGGCGCAAGACGTGTCC
CGTAAGGAGTCGATCGAATCCGCGGACGAAGAGGGCCAGGTGGTCCCGAC
CAAGCGGCCACGCGTCGACGGAGAAGCGGAGGAGGGCGACGCGCCGGAAG
CAGAGGGAGGGCGGAGCAGGGGACGAAGGGCGCACGAGGCGACTGAAGAA
AACGGGGGTGGTAGCGGCGGCCCATTGTGA
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