mRNA_S-dermatodea_contig11740.1103.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11740.1103.1
Unique NamemRNA_S-dermatodea_contig11740.1103.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig11740.1103.1 vs. uniprot
Match: D8LRX0_ECTSI (Vps8 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRX0_ECTSI)

HSP 1 Score: 253 bits (645), Expect = 1.380e-69
Identity = 219/488 (44.88%), Postives = 238/488 (48.77%), Query Frame = 2 
Query:  212 PDLDLHRWRTDGSTN---GHSPHGRAGASPDTEGYSARGGVLSPRSFG---TSGRDGNSREEAMSIGLSDALSGDS-----YDDSS--LLSGVPPRTAFLNRDEGSEDSRLLQQILRESEEEIAASAAERANGFNGGARGGY------AMTKVV----GXXXXXXXXXXXGLQSLDVDRIIESMELEAGEEEEARXXXXXXXXXXGVDGMPSWRTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEPRRRDRVGSVGAVPPPDDTASAATAPAKDADGDGAGHSLAGKPLVGVPLGDGGATDPEGFRRRVFR--------------GRISYQGGRFVGAVPSIGTGDAKGVSGGGDWGLTGALRKAEAAELRLLRGGNREMISPLQVKRRMRAPXXXXXAGQPSAGFPGIGGGVGG-GVGVVRMENLDAASRQLARNAAYGKHGPGVCTATAAHSKFIAVGTSRGLILLFDHFQ-VWGVCGVICGG 1558
            P  +L RWR DG      G S +    AS  +   +A GG+LSPRSFG   TS + G   E   S+G SDA SG       Y D +   LSG PPRTAFL+RDE SEDSRLLQQILRESEEEIAAS                      AMT++V    G            LQSLDVD+IIESMELEAGE+++            G  GM  WR +                                 RRR       A                                                                    G      G  +  V     G A G  GGG+ GLTGALRKAEAAELRLLRGGNREMISPLQVKRRMRAP  XXX GQPSAGFPG        GVGVVRMENLDAASRQLARNAAYGKHGPGVCTATAAHSKFIAVGTSRGLILLFDHFQ +  V G   GG
Sbjct:   13 PSRELERWRGDGGGGRGAGTSANLLPVASRGSATAAAAGGLLSPRSFGGEDTSTKRGGGAE---SVGYSDAYSGXXXXXXXYGDGNNGSLSGAPPRTAFLSRDEVSEDSRLLQQILRESEEEIAASXXXXXXXXXXXXXXXXXXXXXXAMTRLVSSVGGAGSDLYGAADDNLQSLDVDKIIESMELEAGEDDDVTGRAGG-----GGSGMTPWRASVAGGGVSTTATAWSG------------------RRRSSTADGSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGGSRASRGSLLSGVAGDAKGSAPGGGGGGELGLTGALRKAEAAELRLLRGGNREMISPLQVKRRMRAPPPXXXXGQPSAGFPGXXXXXXXXGVGVVRMENLDAASRQLARNAAYGKHGPGVCTATAAHSKFIAVGTSRGLILLFDHFQEIRHVLGSAAGG 474
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BLAST of mRNA_S-dermatodea_contig11740.1103.1 vs. uniprot
Match: A0A6H5JMF4_9PHAE (Vps8 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMF4_9PHAE)

HSP 1 Score: 249 bits (637), Expect = 1.740e-68
Identity = 236/464 (50.86%), Postives = 260/464 (56.03%), Query Frame = 2 
Query:  197 LSSAGPDLDLHRWRTDGSTN---GHSPHGRAGASPDTEGYSARGGVLSPRSFGTSGRDGNSREEAMSIGLSDALSG----DSYDDSS--LLSGVPPRTAFLNRDEGSEDSRLLQQILRESEEEIAASAAERANGFNGGARGGY----AMTKVV----GXXXXXXXXXXXGLQSLDVDRIIESMELEAGEEEEARXXXXXXXXXXGVDGMPSWRTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEPRRRDRVGSVGAVPPPDDTASAATAPAKDADGDGAGHSLAGKPLVGVPLGDGGATDPEGFRRRVFRGRISYQGGRFVGAVPSIGTGDAKGVSGGGDWGLTGALRKAEAAELRLLRGGNREMISPLQVKRRMRAPXXXXXAGQPSAGFPGIGGGVGG-GVGVVRMENLDAASRQLARNAAYGKHGPGVCTATAAHSKFIAVGTSRGLILLFDHFQVWG 1534
            +S+  P  +L RWR DG      G S +    AS  +   +A GG+LSPRSFG           A S+G SD  SG     +Y D +   LSG PPRTAFL+RDE SEDSRLLQQILRESEEEIAAS A+RANGF  G         AMT++V    G            LQSLDVD+IIESMELEAGE+++            G  GM  WR + XXXXXXXXXXXXXXXXXXXXXXXXXXXXX         G+  +                                                           +  R  G++ S   GDAK                 EAAELRLLRGGNREMISPLQVKRRMRAP  XXX GQPSAGFPG        GVGVVRMENLDAASRQLARNAAYGKHGPGVCTATAAHSKFIAVGTSRGLILLFDHFQV G
Sbjct:    1 MSNVSPSRELERWRDDGGGGRGAGTSANLPPVASQGSATAAAAGGLLSPRSFGGEDTSTKGGRGAESVGYSDPYSGGGGSSTYGDGNNGSLSGAPPRTAFLSRDEVSEDSRLLQQILRESEEEIAASVADRANGFGAGXXXXXXXXXAMTRLVSSVGGAGSDLYGAADDNLQSLDVDKIIESMELEAGEDDDVTGRAGG-----GGSGMTPWRASAXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------XXXGAAASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRASR--GSLLSGVAGDAK-----------------EAAELRLLRGGNREMISPLQVKRRMRAPPPXXXXGQPSAGFPGXXXXXXXXGVGVVRMENLDAASRQLARNAAYGKHGPGVCTATAAHSKFIAVGTSRGLILLFDHFQVGG 434
[Close]
BLAST of mRNA_S-dermatodea_contig11740.1103.1 vs. uniprot
Match: A0A835YZH2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZH2_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 2.200e-16
Identity = 59/113 (52.21%), Postives = 70/113 (61.95%), Query Frame = 2 
Query: 1193 LRKAEAAELRLLRGGNREMISPLQVKRRMRAPXXXXXAGQPSAGFPGIGGGVGGGVGVVRMENLDAASRQLARNAAY-GKHGPGVCTATAAHSKFIAVGTSRGLILLFDHFQV 1528
            L  AEA E RLLRGGNR++ISPL+VKRRMR                   G  G G+G  R++ L+  S+QLA+     G  G GV TA A H KFIAVGTSRGL+LLFDHFQ+
Sbjct: 1026 LAAAEAREQRLLRGGNRDVISPLRVKRRMR-------------------GARGHGLGTARLDTLNQISQQLAKGMQQRGAGGAGVPTALAVHPKFIAVGTSRGLVLLFDHFQM 1119
[Close]
BLAST of mRNA_S-dermatodea_contig11740.1103.1 vs. uniprot
Match: A0A2P4XRT3_9STRA (Vacuolar protein sorting-associated protein 8 n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XRT3_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 1.200e-12
Identity = 53/128 (41.41%), Postives = 70/128 (54.69%), Query Frame = 2 
Query: 1193 LRKAEAAELRLLRGGNREMISPLQVKRRMRAPXXXXXAGQPSAGFPGI-----------GGGVGG------GVGVVRMENLDAASRQLARNAAYGKHGPGVCTATAAHSKFIAVGTSRGLILLFDHFQ 1525
            L  AEA E +LL     E+ISPLQVKRR+RA            G   +           G G           GVV++E ++A SRQL +N  + ++GPG  T  A HSKFIA+GTS+GL+++FDHFQ
Sbjct:   93 LEIAEAREKQLLSCVGVELISPLQVKRRLRAHARSKALKSRREGLVAMKKNQRKKKIAEGAGTAAVATEKKSTGVVKVEPMEAISRQLRKNIEFKEYGPGSPTVVAIHSKFIAIGTSKGLVIIFDHFQ 220
[Close]
BLAST of mRNA_S-dermatodea_contig11740.1103.1 vs. uniprot
Match: A0A8K1FDH6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FDH6_PYTOL)

HSP 1 Score: 81.6 bits (200), Expect = 1.870e-12
Identity = 55/134 (41.04%), Postives = 72/134 (53.73%), Query Frame = 2 
Query: 1181 LTGALRK----AEAAELRLLRGGNREMISPLQVKRRMRA---------------PXXXXXAGQPSAGFPGIGGGVGGGVGVVRMENLDAASRQLARNAAYGKHGPGVCTATAAHSKFIAVGTSRGLILLFDHFQ 1525
            L GA+R     AEA E +LL     E++SPLQVKRR+R+               P         S      G       GVV++E ++  SRQL +N  + +HGPG  T  A HSKFIA+GTS+GL+L+FDHFQ
Sbjct:  111 LNGAMRSPLEIAEARERQLLSCVGVELVSPLQVKRRLRSNARTKSATKRKPANRPKSKKKITLASLNADANGKDEKKSTGVVKVEAMETISRQLKKNIEFKEHGPGSPTVVAIHSKFIAIGTSKGLVLIFDHFQ 244
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BLAST of mRNA_S-dermatodea_contig11740.1103.1 vs. uniprot
Match: A0A5D6XX63_9STRA (Vps8 domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XX63_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 4.320e-12
Identity = 55/129 (42.64%), Postives = 72/129 (55.81%), Query Frame = 2 
Query: 1193 LRKAEAAELRLLRGGNREMISPLQVKRRMRAPXXXXXAGQP-----------------SAGFPGIGGGVGG-GVGVVRMENLDAASRQLARNAAYGKHGPGVCTATAAHSKFIAVGTSRGLILLFDHFQ 1525
            L  AEA E +LL     E+ISPLQVKRR+RA      AG                   +A   G     GG   GVV+++ ++A SRQL +N  + + GPG  T  A HSKFIA+GTS+GL+++FDHFQ
Sbjct:  135 LEIAEAREKQLLSCVGVELISPLQVKRRLRANARTKHAGGKKQSAKQKAKAKKTVTVVTAADGGAADKKGGKSTGVVKVQAMEAISRQLRKNIEFKEFGPGSPTVVAIHSKFIAIGTSKGLVIIFDHFQ 263
[Close]
BLAST of mRNA_S-dermatodea_contig11740.1103.1 vs. uniprot
Match: A0A484E0X2_BRELC (Vps8 domain-containing protein n=2 Tax=Peronosporaceae TaxID=4777 RepID=A0A484E0X2_BRELC)

HSP 1 Score: 80.1 bits (196), Expect = 5.680e-12
Identity = 52/124 (41.94%), Postives = 70/124 (56.45%), Query Frame = 2 
Query: 1193 LRKAEAAELRLLRGGNREMISPLQVKRRMRAPXXXXXAGQPSAGF-------------PGIGGGVGGGVGVVRMENLDAASRQLARNAAYGKHGPGVCTATAAHSKFIAVGTSRGLILLFDHFQ 1525
            L+ AEA E +LL     E+ISPLQVKRR+RA            G               G+        GVV++E ++A SRQL +N  + ++GPG  T  A HSKFIA+GTS+GL+++FDHFQ
Sbjct:   94 LQIAEAREQQLLSCVGVELISPLQVKRRLRAYARLKALKSRREGLVAMKKNPRKKILAEGVAAPEKKSRGVVKVEPMEAISRQLRKNIEFKEYGPGSPTVVAIHSKFIAIGTSKGLVIIFDHFQ 217
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BLAST of mRNA_S-dermatodea_contig11740.1103.1 vs. uniprot
Match: G4Z679_PHYSP (Vps8 domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4Z679_PHYSP)

HSP 1 Score: 80.1 bits (196), Expect = 5.680e-12
Identity = 54/128 (42.19%), Postives = 70/128 (54.69%), Query Frame = 2 
Query: 1193 LRKAEAAELRLLRGGNREMISPLQVKRRMRAPXXXXXAGQPSAGFPG---------IGGGVGGGV--------GVVRMENLDAASRQLARNAAYGKHGPGVCTATAAHSKFIAVGTSRGLILLFDHFQ 1525
            L  AEA E +LL     E+ISPLQVKRR+RA            G            I  G G           GVV++E ++A SRQL +N  + ++GPG  T  A HSKFIA+GTS+GL+++FDHFQ
Sbjct:   77 LEIAEAREKQLLSCVGVELISPLQVKRRLRAHARSKALKSRREGLVAMKKNQRKKQIAEGAGAAATATEKKSTGVVKVEPMEAISRQLRKNIEFKEYGPGSPTVVAIHSKFIAIGTSKGLVIIFDHFQ 204
[Close]
BLAST of mRNA_S-dermatodea_contig11740.1103.1 vs. uniprot
Match: A0A2P4Y7R6_9STRA (Glucosidase 2 subunit beta (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y7R6_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 7.270e-12
Identity = 53/128 (41.41%), Postives = 70/128 (54.69%), Query Frame = 2 
Query: 1193 LRKAEAAELRLLRGGNREMISPLQVKRRMRAPXXXXXAGQPSAGFPGI-----------GGGVGG------GVGVVRMENLDAASRQLARNAAYGKHGPGVCTATAAHSKFIAVGTSRGLILLFDHFQ 1525
            L  AEA E +LL     E+ISPLQVKRR+RA            G   +           G G           GVV++E ++A SRQL +N  + ++GPG  T  A HSKFIA+GTS+GL+++FDHFQ
Sbjct:  617 LEIAEAREKQLLSCVGVELISPLQVKRRLRAHARSKALKSRREGLVAMKKNQRKKKIAEGAGTAAVATEKKSTGVVKVEPMEAISRQLRKNIEFKEYGPGSPTVVAIHSKFIAIGTSKGLVIIFDHFQ 744
[Close]
BLAST of mRNA_S-dermatodea_contig11740.1103.1 vs. uniprot
Match: H3GT40_PHYRM (Vps8 domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GT40_PHYRM)

HSP 1 Score: 79.7 bits (195), Expect = 7.880e-12
Identity = 54/131 (41.22%), Postives = 71/131 (54.20%), Query Frame = 2 
Query: 1190 ALRKAEAAELRLLRGGNREMISPLQVKRRMRAPXXXXXAGQPSAGFPG---------IGGGVGG----------GVGVVRMENLDAASRQLARNAAYGKHGPGVCTATAAHSKFIAVGTSRGLILLFDHFQ 1525
            +L  AEA E +LL     E+ISPLQVKRR+RA            G            I  G G             GVV++E ++A SRQL +N  + ++GPG  T  A HSKFIA+GTS+GL+++FDHFQ
Sbjct:   93 SLEIAEAREKQLLSCVGVELISPLQVKRRLRAHARSKALKSRREGLVAMKKNQRKKQIAEGAGATAVAVATEKKSTGVVKVEPMEAISRQLRKNIEFKEYGPGSPTVVAIHSKFIAIGTSKGLVIIFDHFQ 223
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11740.1103.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRX0_ECTSI1.380e-6944.88Vps8 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JMF4_9PHAE1.740e-6850.86Vps8 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A835YZH2_9STRA2.200e-1652.21Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A2P4XRT3_9STRA1.200e-1241.41Vacuolar protein sorting-associated protein 8 n=1 ... [more]
A0A8K1FDH6_PYTOL1.870e-1241.04Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A5D6XX63_9STRA4.320e-1242.64Vps8 domain-containing protein n=1 Tax=Pythium bra... [more]
A0A484E0X2_BRELC5.680e-1241.94Vps8 domain-containing protein n=2 Tax=Peronospora... [more]
G4Z679_PHYSP5.680e-1242.19Vps8 domain-containing protein n=1 Tax=Phytophthor... [more]
A0A2P4Y7R6_9STRA7.270e-1241.41Glucosidase 2 subunit beta (Fragment) n=1 Tax=Phyt... [more]
H3GT40_PHYRM7.880e-1241.22Vps8 domain-containing protein n=1 Tax=Phytophthor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11740contigS-dermatodea_contig11740:1073..4463 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score260.4
Seed ortholog evalue1.8e-66
Seed eggNOG ortholog2880.D8LRX0
KEGG koko:K20178
KEGG Pathwayko04138,map04138
GOsGO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005769,GO:0006810,GO:0006886,GO:0006906,GO:0006996,GO:0007034,GO:0008104,GO:0008150,GO:0008270,GO:0009987,GO:0012505,GO:0015031,GO:0015833,GO:0016043,GO:0016050,GO:0016192,GO:0031410,GO:0031982,GO:0032991,GO:0033036,GO:0033263,GO:0034058,GO:0034613,GO:0042886,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0044422,GO:0044424,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0045324,GO:0046872,GO:0046907,GO:0046914,GO:0048284,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0061024,GO:0061025,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0090174,GO:0097708,GO:0099023
EggNOG free text desc.endosomal vesicle fusion
EggNOG OGsKOG2079@1,KOG2079@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Hectar predicted targeting categoryother localisation
Exons3
Model size1558
Cds size1536
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11740.1103.1prot_S-dermatodea_contig11740.1103.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11740 1073..4441 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924215.8680282-CDS-S-dermatodea_contig11740:1072..13661622924215.8680282-CDS-S-dermatodea_contig11740:1072..1366Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11740 1073..1366 -
1694079099.2073293-CDS-S-dermatodea_contig11740:1072..13661694079099.2073293-CDS-S-dermatodea_contig11740:1072..1366Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11740 1073..1366 -
1622924215.8785477-CDS-S-dermatodea_contig11740:1888..29481622924215.8785477-CDS-S-dermatodea_contig11740:1888..2948Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11740 1889..2948 -
1694079099.221331-CDS-S-dermatodea_contig11740:1888..29481694079099.221331-CDS-S-dermatodea_contig11740:1888..2948Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11740 1889..2948 -
1622924215.888555-CDS-S-dermatodea_contig11740:4259..44411622924215.888555-CDS-S-dermatodea_contig11740:4259..4441Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11740 4260..4441 -
1694079099.2298665-CDS-S-dermatodea_contig11740:4259..44411694079099.2298665-CDS-S-dermatodea_contig11740:4259..4441Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11740 4260..4441 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924215.8977234-UTR-S-dermatodea_contig11740:4441..44631622924215.8977234-UTR-S-dermatodea_contig11740:4441..4463Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11740 4442..4463 -
1694079099.2397077-UTR-S-dermatodea_contig11740:4441..44631694079099.2397077-UTR-S-dermatodea_contig11740:4441..4463Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11740 4442..4463 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11740.1103.1

>prot_S-dermatodea_contig11740.1103.1 ID=prot_S-dermatodea_contig11740.1103.1|Name=mRNA_S-dermatodea_contig11740.1103.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=512bp
MDQDVEAILNASDSEEDDTLNVQGVSLEDILREDDGGYGDDDGDLFDDPD
ALRDNPPHLSSAGPDLDLHRWRTDGSTNGHSPHGRAGASPDTEGYSARGG
VLSPRSFGTSGRDGNSREEAMSIGLSDALSGDSYDDSSLLSGVPPRTAFL
NRDEGSEDSRLLQQILRESEEEIAASAAERANGFNGGARGGYAMTKVVGG
GAGGLDGGGGGLQSLDVDRIIESMELEAGEEEEARGGGGGAGGASGVDGM
PSWRTTSAAAASTASSRRRSFTDGGAGGGVAAEQQAGEPRRRDRVGSVGA
VPPPDDTASAATAPAKDADGDGAGHSLAGKPLVGVPLGDGGATDPEGFRR
RVFRGRISYQGGRFVGAVPSIGTGDAKGVSGGGDWGLTGALRKAEAAELR
LLRGGNREMISPLQVKRRMRAPPPPPPAGQPSAGFPGIGGGVGGGVGVVR
MENLDAASRQLARNAAYGKHGPGVCTATAAHSKFIAVGTSRGLILLFDHF
QVWGVCGVICGG
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mRNA from alignment at S-dermatodea_contig11740:1073..4463-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11740.1103.1 ID=mRNA_S-dermatodea_contig11740.1103.1|Name=mRNA_S-dermatodea_contig11740.1103.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3391bp|location=Sequence derived from alignment at S-dermatodea_contig11740:1073..4463- (Saccorhiza dermatodea SderLu1190fm monoicous)
TCGTCACCAACACCACCGAGCCATGGACCAGGACGTGGAGGCCATCCTGA
ACGCTTCGGACAGCGAGGAGGATGACACCCTCAACGTGCAGGGAGTGAGC
CTGGAGGACATCCTGCGCGAAGACGACGGCGGCTACGGAGACGACGACGG
TGATCTCTTCGACGATCCGGACGCTTTGCGAGACAACCCTCCGCATCTCT
CGAGGTACAGAGAGTACAACCATGCAACACAAAAACTCCTACCAGTATGA
TGTTCCAGATACATGACGTTGCCGCGCTACACACGGCCCAGCAGACCCAG
CAGCCCAGCAATCGTTGCACCGCCCTGCCTAAACCCTTCCGGGCCATGCC
CGTGCTCCCCGTTGCCCTCGCACCGAACTGGTACCGCTGCAACATCTACC
AGAGCTGTAACTCTGTTTCCTGGTCGCGTGCATATATTTGTACGTGTCCA
TATTTTTTTAGGCTTATGGGATGTGAGGTCTGCTATCATAGTTGGACGTG
GCTCTCAAACAGACTGCTACTCTGCTGTGGCACCGCGGACGGTGCCACTG
CGCCCCACGACATACAGTGCCGTGCATTTCCAGTGAGGCTCTACAGTAGT
GAGTGCTGCTTGGTTCCCAGCGTGATTGCACAATTCCGTGAGTGCCGAAG
CTGTGGGTTTCATATTCCTGCTCAAGGGCCGATATCCTTTATAGGAAATG
CTGAATTCATGCGACGTCAAACGTTGTTGTATCATACGTTGGTTGTGACC
CCCCCGGAAGGAGTCGTTTCGCTAGATGCTTGGAGCTCTATGTAGATGGG
GGATCGAGACCCCGAGCATGGCATCCTTGGTCTCGTGCGTGGGTACAAGA
AGCAGCCTGGTGTCCGTATTCCTGCCATCACTTTAATTGAGTGTTACTTC
CATCCGACTTGTTCAACTAGCATACACATGGCAGCATGGCAGCTCTAAGA
AAGGCACGGGTTTCGCAACTCTGGGAGGCCGGGAATCCAACCTATTCATA
TATGTTTTCTTTCCCACATTATTATCATATCATACCAGAGAAGACACTGC
GTATCTTCTCTTTTTACCGTTTATCTCACATATTACGGATCCGCAATGTT
CTAATCCCGTCTGTGGTTCGGGAAGGATTCACCCATCTCTTCATCATCTC
CCCGGTGTTATACGAAGTACAAGCCTAAACACATTAGGTAACATCTTTAT
TAATTCATTGCGGTTTGCACGTTTGTTTGTTTATATTTTAGAGTGGAGCC
TTGATGCAAAAATTTGAGGCCGATATATGGAGAAGAGTTACAGCATCTAA
TACCTTTACAATTTTGATAGTAGAGTTTTAGAGTAGTCACTTACAGAGTA
GTGGCCTGATTTTCCAATTGATTTCAAACCCACATATATATCGCCTGCCA
ACGCACACCTCACGGGTGTAGCCGTGGTACCCACTATTACCCACAATTAA
TATTGTAGTTATAACTAAAACCAAAACACCCCCAACCTCCTTCGCCTACT
CTACCTTCGTCTCAGCGCTGGCCCGGACCTAGACCTCCACCGATGGAGAA
CAGACGGATCCACGAATGGCCACTCGCCGCACGGCCGCGCGGGAGCAAGC
CCAGACACGGAGGGCTATTCCGCAAGAGGCGGCGTCCTCAGCCCGCGCTC
TTTCGGCACCAGCGGCCGCGATGGCAACAGCAGGGAGGAGGCCATGAGCA
TTGGCCTGAGCGACGCGCTCAGCGGTGACAGCTACGACGACTCGTCGCTG
CTATCGGGCGTGCCACCGCGGACGGCGTTTCTTAACCGGGACGAGGGCTC
CGAAGACTCCCGCCTTCTGCAGCAGATCCTCCGGGAGAGCGAGGAGGAAA
TCGCCGCGTCGGCCGCGGAGCGCGCTAACGGCTTCAATGGCGGGGCTCGC
GGGGGTTACGCCATGACCAAGGTTGTGGGCGGGGGGGCTGGCGGCTTGGA
TGGCGGCGGCGGCGGCCTCCAGAGCCTGGACGTAGACCGGATAATCGAAT
CCATGGAGCTGGAGGCGGGGGAGGAGGAAGAGGCCAGGGGCGGCGGCGGC
GGTGCGGGTGGTGCGTCAGGTGTCGACGGTATGCCCTCCTGGCGAACCAC
GTCGGCGGCCGCCGCGTCGACCGCGTCGTCCAGAAGAAGATCCTTCACAG
ATGGCGGAGCCGGTGGTGGGGTCGCGGCCGAGCAACAGGCGGGGGAGCCG
CGTAGGCGAGATCGGGTGGGCAGCGTGGGCGCGGTGCCGCCGCCAGATGA
CACTGCCTCTGCTGCCACGGCTCCAGCGAAAGATGCCGACGGTGATGGAG
CCGGTCACAGCCTAGCCGGGAAACCCCTGGTAGGCGTTCCGCTCGGGGAT
GGCGGGGCGACGGACCCGGAGGGTTTCAGAAGAAGAGTGTTTCGAGGGAG
GATAAGTTACCAGGGTGGACGTTTTGTCGGGGCGGTGCCTTCGATTGGTA
CCGGGGATGCGAAAGGCGTTTCTGGGGGGGGGGATTGGGGCTTGACGGGC
GCGTTGCGGAAGGCGGAGGCGGCGGAGCTGAGGCTTTTGCGCGGCGGAAA
CAGGGAGATGATCAGCCCCCTACAGGTGTGGGTGTATTCCGCGAGTTAGT
CTGTTCCTTGTGGTGTGTGCTTGTGTGTTTGCGTCTTTTGTCTCGTGTCC
TTTGTCGGGTGTTTTGTGTGTCGTCTGCCTTGTGTGGCGAGGCGAAGTAT
ACTCTCTAAACAGGGGAGGCACGTACTCTGTGGTATTGAACTATTCGCTT
GCACAGTTTTGATGTGTGTTTGGGTGATGGATACCCTTTGTGCTTCTTGT
TTTTTTAGGTGTGGCGTTCATTGGGTTGTTGATATCTGATACCTCTATCT
TTCTCCCTCTCTCCCTCTCTATGCGGCTTCTTCGTCTCCTCTTGTTTAAA
CTTGTTAACCTCCCCCCCCCCCCTTTCCGACTCACCTCGCGAAGTTAGGC
CGACTTTTGAATGAACCACCTCCCCTAAAAAATGCAATGATTTCAAAAAC
ATAGAGCGAGCGTTGGGGTCCCACCCCACCGAGAGAAGCCTTACCCAACC
CCCAAACTCCGTCGCAATCATCGCCCCCGGGGGAAACCGCCAAACAGGTG
AAACGACGAATGCGCGCCCCACCGCCCCCGCCACCCGCGGGGCAGCCTTC
CGCGGGGTTTCCAGGCATCGGTGGTGGTGTAGGAGGGGGTGTAGGGGTTG
TTCGGATGGAAAATTTGGACGCGGCGTCCCGGCAGCTTGCGAGAAACGCG
GCGTACGGCAAGCACGGCCCTGGGGTTTGCACCGCCACGGCGGCGCACTC
GAAGTTCATCGCCGTGGGGACTTCGAGGGGGCTCATTCTCCTGTTCGACC
ACTTTCAGGTTTGGGGAGTTTGTGGTGTTATATGCGGAGGC
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Coding sequence (CDS) from alignment at S-dermatodea_contig11740:1073..4463-

>mRNA_S-dermatodea_contig11740.1103.1 ID=mRNA_S-dermatodea_contig11740.1103.1|Name=mRNA_S-dermatodea_contig11740.1103.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=3072bp|location=Sequence derived from alignment at S-dermatodea_contig11740:1073..4463- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGACCAGGACGTGGAGGCCATCCTGAACGCTTCGGACAGCGAGGAGGA
TGACACCCTCAACGTGCAGGGAGTGAGCCTGGAGGACATCCTGCGCGAAG
ACGACGGCGGCTACGGAGACGACGACGGTGATCTCTTCGACGATCCGGAC
GCTTTGCGAGACAACCCTCCGCATCTCTCGAGATGGACCAGGACGTGGAG
GCCATCCTGAACGCTTCGGACAGCGAGGAGGATGACACCCTCAACGTGCA
GGGAGTGAGCCTGGAGGACATCCTGCGCGAAGACGACGGCGGCTACGGAG
ACGACGACGGTGATCTCTTCGACGATCCGGACGCTTTGCGAGACAACCCT
CCGCATCTCTCGAGCGCTGGCCCGGACCTAGACCTCCACCGATGGAGAAC
AGACGGATCCACGAATGGCCACTCGCCGCACGGCCGCGCGGGAGCAAGCC
CAGACACGGAGGGCTATTCCGCAAGAGGCGGCGTCCTCAGCCCGCGCTCT
TTCGGCACCAGCGGCCGCGATGGCAACAGCAGGGAGGAGGCCATGAGCAT
TGGCCTGAGCGACGCGCTCAGCGGTGACAGCTACGACGACTCGTCGCTGC
TATCGGGCGTGCCACCGCGGACGGCGTTTCTTAACCGGGACGAGGGCTCC
GAAGACTCCCGCCTTCTGCAGCAGATCCTCCGGGAGAGCGAGGAGGAAAT
CGCCGCGTCGGCCGCGGAGCGCGCTAACGGCTTCAATGGCGGGGCTCGCG
GGGGTTACGCCATGACCAAGGTTGTGGGCGGGGGGGCTGGCGGCTTGGAT
GGCGGCGGCGGCGGCCTCCAGAGCCTGGACGTAGACCGGATAATCGAATC
CATGGAGCTGGAGGCGGGGGAGGAGGAAGAGGCCAGGGGCGGCGGCGGCG
GTGCGGGTGGTGCGTCAGGTGTCGACGGTATGCCCTCCTGGCGAACCACG
TCGGCGGCCGCCGCGTCGACCGCGTCGTCCAGAAGAAGATCCTTCACAGA
TGGCGGAGCCGGTGGTGGGGTCGCGGCCGAGCAACAGGCGGGGGAGCCGC
GTAGGCGAGATCGGGTGGGCAGCGTGGGCGCGGTGCCGCCGCCAGATGAC
ACTGCCTCTGCTGCCACGGCTCCAGCGAAAGATGCCGACGGTGATGGAGC
CGGTCACAGCCTAGCCGGGAAACCCCTGGTAGGCGTTCCGCTCGGGGATG
GCGGGGCGACGGACCCGGAGGGTTTCAGAAGAAGAGTGTTTCGAGGGAGG
ATAAGTTACCAGGGTGGACGTTTTGTCGGGGCGGTGCCTTCGATTGGTAC
CGGGGATGCGAAAGGCGTTTCTGGGGGGGGGGATTGGGGCTTGACGGGCG
CGTTGCGGAAGGCGGAGGCGGCGGAGCTGAGGCTTTTGCGCGGCGGAAAC
AGGGAGATGATCAGCCCCCTACAGCGCTGGCCCGGACCTAGACCTCCACC
GATGGAGAACAGACGGATCCACGAATGGCCACTCGCCGCACGGCCGCGCG
GGAGCAAGCCCAGACACGGAGGGCTATTCCGCAAGAGGCGGCGTCCTCAG
CCCGCGCTCTTTCGGCACCAGCGGCCGCGATGGCAACAGCAGGGAGGAGG
CCATGAGCATTGGCCTGAGCGACGCGCTCAGCGGTGACAGCTACGACGAC
TCGTCGCTGCTATCGGGCGTGCCACCGCGGACGGCGTTTCTTAACCGGGA
CGAGGGCTCCGAAGACTCCCGCCTTCTGCAGCAGATCCTCCGGGAGAGCG
AGGAGGAAATCGCCGCGTCGGCCGCGGAGCGCGCTAACGGCTTCAATGGC
GGGGCTCGCGGGGGTTACGCCATGACCAAGGTTGTGGGCGGGGGGGCTGG
CGGCTTGGATGGCGGCGGCGGCGGCCTCCAGAGCCTGGACGTAGACCGGA
TAATCGAATCCATGGAGCTGGAGGCGGGGGAGGAGGAAGAGGCCAGGGGC
GGCGGCGGCGGTGCGGGTGGTGCGTCAGGTGTCGACGGTATGCCCTCCTG
GCGAACCACGTCGGCGGCCGCCGCGTCGACCGCGTCGTCCAGAAGAAGAT
CCTTCACAGATGGCGGAGCCGGTGGTGGGGTCGCGGCCGAGCAACAGGCG
GGGGAGCCGCGTAGGCGAGATCGGGTGGGCAGCGTGGGCGCGGTGCCGCC
GCCAGATGACACTGCCTCTGCTGCCACGGCTCCAGCGAAAGATGCCGACG
GTGATGGAGCCGGTCACAGCCTAGCCGGGAAACCCCTGGTAGGCGTTCCG
CTCGGGGATGGCGGGGCGACGGACCCGGAGGGTTTCAGAAGAAGAGTGTT
TCGAGGGAGGATAAGTTACCAGGGTGGACGTTTTGTCGGGGCGGTGCCTT
CGATTGGTACCGGGGATGCGAAAGGCGTTTCTGGGGGGGGGGATTGGGGC
TTGACGGGCGCGTTGCGGAAGGCGGAGGCGGCGGAGCTGAGGCTTTTGCG
CGGCGGAAACAGGGAGATGATCAGCCCCCTACAGGTGAAACGACGAATGC
GCGCCCCACCGCCCCCGCCACCCGCGGGGCAGCCTTCCGCGGGGTTTCCA
GGCATCGGTGGTGGTGTAGGAGGGGGTGTAGGGGTTGTTCGGATGGAAAA
TTTGGACGCGGCGTCCCGGCAGCTTGCGAGAAACGCGGCGTACGGCAAGC
ACGGCCCTGGGGTTTGCACCGCCACGGCGGCGCACTCGAAGTTCATCGCC
GTGGGGACTTCGAGGGGGCTCATTCTCCTGTTCGACCACTTTCAGGTTTG
GGGAGTTTGTGGTGTTATATGCGGAGGCGTGAAACGACGAATGCGCGCCC
CACCGCCCCCGCCACCCGCGGGGCAGCCTTCCGCGGGGTTTCCAGGCATC
GGTGGTGGTGTAGGAGGGGGTGTAGGGGTTGTTCGGATGGAAAATTTGGA
CGCGGCGTCCCGGCAGCTTGCGAGAAACGCGGCGTACGGCAAGCACGGCC
CTGGGGTTTGCACCGCCACGGCGGCGCACTCGAAGTTCATCGCCGTGGGG
ACTTCGAGGGGGCTCATTCTCCTGTTCGACCACTTTCAGGTTTGGGGAGT
TTGTGGTGTTATATGCGGAGGC
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