mRNA_S-dermatodea_contig11711.1093.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig11711.1093.1 vs. uniprot
Match: D7FZQ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZQ7_ECTSI) HSP 1 Score: 128 bits (321), Expect = 8.530e-35 Identity = 75/146 (51.37%), Postives = 98/146 (67.12%), Query Frame = 1
Query: 1 ADSRSSKGDSRVSGGRGKTWRCNGALYEKGEKTSRGCQAHVKGCRQASKEWKVTQIDLRHDNCTGQAPPPTGKGKAKKQRVCRRSIQPEAAALINANSSISAPALRKSLKATQGVDIHERTANRMINEERGKSQDAIARDYQLLDS 438
+ SR + D RVSGGRGK RC GA+ G+ TS GC +GC+Q WKVT++ L H CTGQA KKQR+ RR ++ EAAAL++AN SI+ P+L K+LKAT GVD+ ER+A+RM + GK +DAIA++YQLL S
Sbjct: 3 SQSRQCRLDKRVSGGRGKLHRCTGAIIN-GKATS-GCPVRARGCKQTDGTWKVTEVVLDHVACTGQA-------GNKKQRINRRCVEGEAAALVSANHSITCPSLVKTLKATSGVDVSERSASRMRADILGKGKDAIAKEYQLLQS 139
BLAST of mRNA_S-dermatodea_contig11711.1093.1 vs. uniprot
Match: A0A6H5J5Y0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5Y0_9PHAE) HSP 1 Score: 125 bits (315), Expect = 1.760e-32 Identity = 74/146 (50.68%), Postives = 96/146 (65.75%), Query Frame = 1
Query: 1 ADSRSSKGDSRVSGGRGKTWRCNGALYEKGEKTSRGCQAHVKGCRQASKEWKVTQIDLRHDNCTGQAPPPTGKGKAKKQRVCRRSIQPEAAALINANSSISAPALRKSLKATQGVDIHERTANRMINEERGKSQDAIARDYQLLDS 438
A SR + D R+ GGRGK RC GA+ G+ TS GC +GC+Q WKVT++ L H CTGQA KKQR+ RR ++ EAAAL++AN I+ P+L K+LKAT GVD+ ERTA+RM + GK +DAIA++YQLL S
Sbjct: 157 AQSRQCRLDKRIIGGRGKLHRCTGAIVN-GKATS-GCPVLARGCKQTDGTWKVTEVVLDHVACTGQA-------SNKKQRINRRCVEREAAALVSANHRITCPSLVKTLKATSGVDVSERTASRMRADILGKGKDAIAKEYQLLQS 293
BLAST of mRNA_S-dermatodea_contig11711.1093.1 vs. uniprot
Match: A0A6H5JX21_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX21_9PHAE) HSP 1 Score: 121 bits (304), Expect = 1.030e-31 Identity = 74/144 (51.39%), Postives = 93/144 (64.58%), Query Frame = 1
Query: 7 SRSSKGDSRVSGGRGKTWRCNGALYEKGEKTSRGCQAHVKGCRQASKEWKVTQIDLRHDNCTGQAPPPTGKGKAKKQRVCRRSIQPEAAALINANSSISAPALRKSLKATQGVDIHERTANRMINEERGKSQDAIARDYQLLDS 438
SR + D RVSGGRGK RC GA+ G+ TS GC + C+ WKVT++ L H CTGQA KKQR+ RR ++ EAAAL+++N SI+ PAL K+LKAT GVDI ERTA RM + GK +D IA++YQLL S
Sbjct: 51 SRQCRLDKRVSGGRGKLHRCTGAVIN-GKATS-GCPVLARACKLHDGTWKVTEVVLDHVACTGQA-------GNKKQRINRRCVEEEAAALVSSNRSITCPALAKTLKATSGVDISERTAGRMRADILGKGKDTIAKEYQLLQS 185
BLAST of mRNA_S-dermatodea_contig11711.1093.1 vs. uniprot
Match: A0A6H5KQC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQC0_9PHAE) HSP 1 Score: 117 bits (294), Expect = 2.090e-29 Identity = 72/144 (50.00%), Postives = 91/144 (63.19%), Query Frame = 1
Query: 1 ADSRSSKGDSRVSGGRGKTWRCNGALYEKGEKTSRGCQAHVKGCRQASKEWKVTQIDLRHDNCTGQAPPPTGKGKAKKQRVCRRSIQPEAAALINANSSISAPALRKSLKATQGVDIHERTANRMINEERGKSQDAIARDYQLL 432
+ SR + D R SGGR K RC GA+ G+ TS GC +GC+Q WKVT+ L H CTGQA KKQ + RR ++ +AAAL++AN SI+ P+L K+LKAT GVDI ERTA RM + GK DAIA++YQLL
Sbjct: 3 SQSRQCRLDKRDSGGRSKLHRCTGAIIN-GKATS-GCPVRARGCKQTDGTWKVTEAVLDHVACTGQA-------GNKKQGINRRCVEKQAAALVSANHSITCPSLVKTLKATSGVDISERTAGRMRVDILGKGNDAIAKEYQLL 137
BLAST of mRNA_S-dermatodea_contig11711.1093.1 vs. uniprot
Match: A0A6H5L4I0_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4I0_9PHAE) HSP 1 Score: 121 bits (304), Expect = 2.700e-29 Identity = 74/144 (51.39%), Postives = 93/144 (64.58%), Query Frame = 1
Query: 7 SRSSKGDSRVSGGRGKTWRCNGALYEKGEKTSRGCQAHVKGCRQASKEWKVTQIDLRHDNCTGQAPPPTGKGKAKKQRVCRRSIQPEAAALINANSSISAPALRKSLKATQGVDIHERTANRMINEERGKSQDAIARDYQLLDS 438
SR + D RVSGGRGK RC GA+ G+ TS GC + C+ WKVT++ L H CTGQA KKQR+ RR ++ EAAAL+++N SI+ PAL K+LKAT GVDI ERTA RM + GK +D IA++YQLL S
Sbjct: 51 SRQCRLDKRVSGGRGKLHRCTGAVIN-GKATS-GCPVLARACKLHDGTWKVTEVVLDHVACTGQA-------GNKKQRINRRCVEEEAAALVSSNRSITCPALAKTLKATSGVDISERTAGRMRADILGKGKDTIAKEYQLLQS 185
BLAST of mRNA_S-dermatodea_contig11711.1093.1 vs. uniprot
Match: A0A6H5L768_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L768_9PHAE) HSP 1 Score: 100 bits (249), Expect = 1.130e-22 Identity = 59/125 (47.20%), Postives = 78/125 (62.40%), Query Frame = 1
Query: 64 CNGALYEKGEKTSRGCQAHVKGCRQASKEWKVTQIDLRHDNCTGQAPPPTGKGKAKKQRVCRRSIQPEAAALINANSSISAPALRKSLKATQGVDIHERTANRMINEERGKSQDAIARDYQLLDS 438
C GA+ G+ TS GC +GC+Q WKV + L H TGQA KKQR+ RR ++ EA L++AN I+ P+L K+LKAT GVD+ ERTA+RM + GK +DAIA++YQLL S
Sbjct: 21 CTGAIVN-GKATS-GCPVRARGCKQTDGTWKVMDVVLDHVARTGQA-------GNKKQRINRRCVEGEATGLVSANHRITCPSLVKTLKATSGVDVSERTASRMRADILGKGKDAIAKEYQLLQS 136 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11711.1093.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig11711.1093.1 >prot_S-dermatodea_contig11711.1093.1 ID=prot_S-dermatodea_contig11711.1093.1|Name=mRNA_S-dermatodea_contig11711.1093.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=147bp ADSRSSKGDSRVSGGRGKTWRCNGALYEKGEKTSRGCQAHVKGCRQASKEback to top mRNA from alignment at S-dermatodea_contig11711:6252..6692- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig11711.1093.1 ID=mRNA_S-dermatodea_contig11711.1093.1|Name=mRNA_S-dermatodea_contig11711.1093.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=441bp|location=Sequence derived from alignment at S-dermatodea_contig11711:6252..6692- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig11711:6252..6692- >mRNA_S-dermatodea_contig11711.1093.1 ID=mRNA_S-dermatodea_contig11711.1093.1|Name=mRNA_S-dermatodea_contig11711.1093.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=882bp|location=Sequence derived from alignment at S-dermatodea_contig11711:6252..6692- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |