mRNA_S-dermatodea_contig11711.1093.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11711.1093.1
Unique NamemRNA_S-dermatodea_contig11711.1093.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig11711.1093.1 vs. uniprot
Match: D7FZQ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZQ7_ECTSI)

HSP 1 Score: 128 bits (321), Expect = 8.530e-35
Identity = 75/146 (51.37%), Postives = 98/146 (67.12%), Query Frame = 1
Query:    1 ADSRSSKGDSRVSGGRGKTWRCNGALYEKGEKTSRGCQAHVKGCRQASKEWKVTQIDLRHDNCTGQAPPPTGKGKAKKQRVCRRSIQPEAAALINANSSISAPALRKSLKATQGVDIHERTANRMINEERGKSQDAIARDYQLLDS 438
            + SR  + D RVSGGRGK  RC GA+   G+ TS GC    +GC+Q    WKVT++ L H  CTGQA         KKQR+ RR ++ EAAAL++AN SI+ P+L K+LKAT GVD+ ER+A+RM  +  GK +DAIA++YQLL S
Sbjct:    3 SQSRQCRLDKRVSGGRGKLHRCTGAIIN-GKATS-GCPVRARGCKQTDGTWKVTEVVLDHVACTGQA-------GNKKQRINRRCVEGEAAALVSANHSITCPSLVKTLKATSGVDVSERSASRMRADILGKGKDAIAKEYQLLQS 139          
BLAST of mRNA_S-dermatodea_contig11711.1093.1 vs. uniprot
Match: A0A6H5J5Y0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5Y0_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 1.760e-32
Identity = 74/146 (50.68%), Postives = 96/146 (65.75%), Query Frame = 1
Query:    1 ADSRSSKGDSRVSGGRGKTWRCNGALYEKGEKTSRGCQAHVKGCRQASKEWKVTQIDLRHDNCTGQAPPPTGKGKAKKQRVCRRSIQPEAAALINANSSISAPALRKSLKATQGVDIHERTANRMINEERGKSQDAIARDYQLLDS 438
            A SR  + D R+ GGRGK  RC GA+   G+ TS GC    +GC+Q    WKVT++ L H  CTGQA         KKQR+ RR ++ EAAAL++AN  I+ P+L K+LKAT GVD+ ERTA+RM  +  GK +DAIA++YQLL S
Sbjct:  157 AQSRQCRLDKRIIGGRGKLHRCTGAIVN-GKATS-GCPVLARGCKQTDGTWKVTEVVLDHVACTGQA-------SNKKQRINRRCVEREAAALVSANHRITCPSLVKTLKATSGVDVSERTASRMRADILGKGKDAIAKEYQLLQS 293          
BLAST of mRNA_S-dermatodea_contig11711.1093.1 vs. uniprot
Match: A0A6H5JX21_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX21_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 1.030e-31
Identity = 74/144 (51.39%), Postives = 93/144 (64.58%), Query Frame = 1
Query:    7 SRSSKGDSRVSGGRGKTWRCNGALYEKGEKTSRGCQAHVKGCRQASKEWKVTQIDLRHDNCTGQAPPPTGKGKAKKQRVCRRSIQPEAAALINANSSISAPALRKSLKATQGVDIHERTANRMINEERGKSQDAIARDYQLLDS 438
            SR  + D RVSGGRGK  RC GA+   G+ TS GC    + C+     WKVT++ L H  CTGQA         KKQR+ RR ++ EAAAL+++N SI+ PAL K+LKAT GVDI ERTA RM  +  GK +D IA++YQLL S
Sbjct:   51 SRQCRLDKRVSGGRGKLHRCTGAVIN-GKATS-GCPVLARACKLHDGTWKVTEVVLDHVACTGQA-------GNKKQRINRRCVEEEAAALVSSNRSITCPALAKTLKATSGVDISERTAGRMRADILGKGKDTIAKEYQLLQS 185          
BLAST of mRNA_S-dermatodea_contig11711.1093.1 vs. uniprot
Match: A0A6H5KQC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQC0_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 2.090e-29
Identity = 72/144 (50.00%), Postives = 91/144 (63.19%), Query Frame = 1
Query:    1 ADSRSSKGDSRVSGGRGKTWRCNGALYEKGEKTSRGCQAHVKGCRQASKEWKVTQIDLRHDNCTGQAPPPTGKGKAKKQRVCRRSIQPEAAALINANSSISAPALRKSLKATQGVDIHERTANRMINEERGKSQDAIARDYQLL 432
            + SR  + D R SGGR K  RC GA+   G+ TS GC    +GC+Q    WKVT+  L H  CTGQA         KKQ + RR ++ +AAAL++AN SI+ P+L K+LKAT GVDI ERTA RM  +  GK  DAIA++YQLL
Sbjct:    3 SQSRQCRLDKRDSGGRSKLHRCTGAIIN-GKATS-GCPVRARGCKQTDGTWKVTEAVLDHVACTGQA-------GNKKQGINRRCVEKQAAALVSANHSITCPSLVKTLKATSGVDISERTAGRMRVDILGKGNDAIAKEYQLL 137          
BLAST of mRNA_S-dermatodea_contig11711.1093.1 vs. uniprot
Match: A0A6H5L4I0_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4I0_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 2.700e-29
Identity = 74/144 (51.39%), Postives = 93/144 (64.58%), Query Frame = 1
Query:    7 SRSSKGDSRVSGGRGKTWRCNGALYEKGEKTSRGCQAHVKGCRQASKEWKVTQIDLRHDNCTGQAPPPTGKGKAKKQRVCRRSIQPEAAALINANSSISAPALRKSLKATQGVDIHERTANRMINEERGKSQDAIARDYQLLDS 438
            SR  + D RVSGGRGK  RC GA+   G+ TS GC    + C+     WKVT++ L H  CTGQA         KKQR+ RR ++ EAAAL+++N SI+ PAL K+LKAT GVDI ERTA RM  +  GK +D IA++YQLL S
Sbjct:   51 SRQCRLDKRVSGGRGKLHRCTGAVIN-GKATS-GCPVLARACKLHDGTWKVTEVVLDHVACTGQA-------GNKKQRINRRCVEEEAAALVSSNRSITCPALAKTLKATSGVDISERTAGRMRADILGKGKDTIAKEYQLLQS 185          
BLAST of mRNA_S-dermatodea_contig11711.1093.1 vs. uniprot
Match: A0A6H5L768_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L768_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 1.130e-22
Identity = 59/125 (47.20%), Postives = 78/125 (62.40%), Query Frame = 1
Query:   64 CNGALYEKGEKTSRGCQAHVKGCRQASKEWKVTQIDLRHDNCTGQAPPPTGKGKAKKQRVCRRSIQPEAAALINANSSISAPALRKSLKATQGVDIHERTANRMINEERGKSQDAIARDYQLLDS 438
            C GA+   G+ TS GC    +GC+Q    WKV  + L H   TGQA         KKQR+ RR ++ EA  L++AN  I+ P+L K+LKAT GVD+ ERTA+RM  +  GK +DAIA++YQLL S
Sbjct:   21 CTGAIVN-GKATS-GCPVRARGCKQTDGTWKVMDVVLDHVARTGQA-------GNKKQRINRRCVEGEATGLVSANHRITCPSLVKTLKATSGVDVSERTASRMRADILGKGKDAIAKEYQLLQS 136          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11711.1093.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FZQ7_ECTSI8.530e-3551.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J5Y0_9PHAE1.760e-3250.68Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JX21_9PHAE1.030e-3151.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQC0_9PHAE2.090e-2950.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L4I0_9PHAE2.700e-2951.39SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5L768_9PHAE1.130e-2247.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11711contigS-dermatodea_contig11711:6252..6692 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-13_000020.1
Exons1
Model size441
Cds size441
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924215.17636-CDS-S-dermatodea_contig11711:6251..66921622924215.17636-CDS-S-dermatodea_contig11711:6251..6692Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11711 6252..6692 -
1694079098.6854682-CDS-S-dermatodea_contig11711:6251..66921694079098.6854682-CDS-S-dermatodea_contig11711:6251..6692Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11711 6252..6692 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11711.1093.1prot_S-dermatodea_contig11711.1093.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11711 6252..6692 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11711.1093.1

>prot_S-dermatodea_contig11711.1093.1 ID=prot_S-dermatodea_contig11711.1093.1|Name=mRNA_S-dermatodea_contig11711.1093.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=147bp
ADSRSSKGDSRVSGGRGKTWRCNGALYEKGEKTSRGCQAHVKGCRQASKE
WKVTQIDLRHDNCTGQAPPPTGKGKAKKQRVCRRSIQPEAAALINANSSI
SAPALRKSLKATQGVDIHERTANRMINEERGKSQDAIARDYQLLDS*
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mRNA from alignment at S-dermatodea_contig11711:6252..6692-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11711.1093.1 ID=mRNA_S-dermatodea_contig11711.1093.1|Name=mRNA_S-dermatodea_contig11711.1093.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=441bp|location=Sequence derived from alignment at S-dermatodea_contig11711:6252..6692- (Saccorhiza dermatodea SderLu1190fm monoicous)
GCCGATAGCCGCAGCAGCAAAGGGGACAGCAGGGTGAGCGGTGGGCGGGG CAAAACCTGGCGTTGCAATGGAGCCCTCTACGAGAAAGGGGAGAAAACGA GTAGGGGTTGCCAAGCGCATGTTAAAGGGTGCAGGCAAGCGAGCAAGGAA TGGAAGGTGACCCAGATAGACCTCCGCCACGACAACTGCACCGGACAAGC GCCCCCTCCCACCGGGAAAGGCAAGGCCAAGAAGCAGCGAGTTTGCCGGC GTTCTATCCAGCCAGAGGCTGCCGCGTTGATCAACGCGAACAGCAGCATC TCAGCCCCGGCACTGCGAAAGTCGCTGAAGGCAACGCAAGGCGTGGACAT CCATGAGCGTACAGCCAACCGTATGATCAACGAGGAGCGCGGAAAGAGCC AAGATGCAATTGCCCGAGACTATCAGTTGCTGGACAGCTAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig11711:6252..6692-

>mRNA_S-dermatodea_contig11711.1093.1 ID=mRNA_S-dermatodea_contig11711.1093.1|Name=mRNA_S-dermatodea_contig11711.1093.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=882bp|location=Sequence derived from alignment at S-dermatodea_contig11711:6252..6692- (Saccorhiza dermatodea SderLu1190fm monoicous)
GCCGATAGCCGCAGCAGCAAAGGGGACAGCAGGGTGAGCGGTGGGCGGGG
CAAAACCTGGCGTTGCAATGGAGCCCTCTACGAGAAAGGGGAGAAAACGA
GTAGGGGTTGCCAAGCGCATGTTAAAGGGTGCAGGCAAGCGAGCAAGGAA
TGGAAGGTGACCCAGATAGACCTCCGCCACGACAACTGCACCGGACAAGC
GCCCCCTCCCACCGGGAAAGGCAAGGCCAAGAAGCAGCGAGTTTGCCGGC
GTTCTATCCAGCCAGAGGCTGCCGCGTTGATCAACGCGAACAGCAGCATC
TCAGCCCCGGCACTGCGAAAGTCGCTGAAGGCAACGCAAGGCGTGGACAT
CCATGAGCGTACAGCCAACCGTATGATCAACGAGGAGCGCGGAAAGAGCC
AAGATGCAATTGCCCGAGACTATCAGTTGCTGGACAGCTAAGCCGATAGC
CGCAGCAGCAAAGGGGACAGCAGGGTGAGCGGTGGGCGGGGCAAAACCTG
GCGTTGCAATGGAGCCCTCTACGAGAAAGGGGAGAAAACGAGTAGGGGTT
GCCAAGCGCATGTTAAAGGGTGCAGGCAAGCGAGCAAGGAATGGAAGGTG
ACCCAGATAGACCTCCGCCACGACAACTGCACCGGACAAGCGCCCCCTCC
CACCGGGAAAGGCAAGGCCAAGAAGCAGCGAGTTTGCCGGCGTTCTATCC
AGCCAGAGGCTGCCGCGTTGATCAACGCGAACAGCAGCATCTCAGCCCCG
GCACTGCGAAAGTCGCTGAAGGCAACGCAAGGCGTGGACATCCATGAGCG
TACAGCCAACCGTATGATCAACGAGGAGCGCGGAAAGAGCCAAGATGCAA
TTGCCCGAGACTATCAGTTGCTGGACAGCTAA
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