mRNA_S-dermatodea_contig11708.1090.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11708.1090.1
Unique NamemRNA_S-dermatodea_contig11708.1090.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11708.1090.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11708contigS-dermatodea_contig11708:3362..3914 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size554
Cds size348
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924215.0343385-CDS-S-dermatodea_contig11708:3361..37091622924215.0343385-CDS-S-dermatodea_contig11708:3361..3709Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11708 3362..3709 +
1694079098.551648-CDS-S-dermatodea_contig11708:3361..37091694079098.551648-CDS-S-dermatodea_contig11708:3361..3709Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11708 3362..3709 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924215.047477-UTR-S-dermatodea_contig11708:3709..39141622924215.047477-UTR-S-dermatodea_contig11708:3709..3914Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11708 3710..3914 +
1694079098.5696054-UTR-S-dermatodea_contig11708:3709..39141694079098.5696054-UTR-S-dermatodea_contig11708:3709..3914Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11708 3710..3914 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11708.1090.1prot_S-dermatodea_contig11708.1090.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11708 3362..3709 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11708.1090.1

>prot_S-dermatodea_contig11708.1090.1 ID=prot_S-dermatodea_contig11708.1090.1|Name=mRNA_S-dermatodea_contig11708.1090.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=116bp
AFASLASRGGATGCSTATTPRKSAYGSGGLAAHKDAPEAHLGERRARSRI
GFAIDYAFLRLSIQLWRWHHACLLDAPSRVLHNSGCRGAYRCGRVRGSLR
RLLRIFRAFRIARRR*
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mRNA from alignment at S-dermatodea_contig11708:3362..3914+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11708.1090.1 ID=mRNA_S-dermatodea_contig11708.1090.1|Name=mRNA_S-dermatodea_contig11708.1090.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=553bp|location=Sequence derived from alignment at S-dermatodea_contig11708:3362..3914+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCTTTCGCCTCCCTCGCCAGCCGCGGCGGCGCCACTGGTTGTAGCACGGC
CACCACGCCCAGAAAAAGTGCGTACGGTAGCGGTGGCCTCGCCGCCCACA
AGGACGCTCCCGAAGCCCACCTCGGAGAGAGACGGGCCCGTTCCCGCATC
GGTTTCGCTATCGACTACGCCTTTCTCCGTCTGAGCATCCAGCTCTGGAG
GTGGCATCACGCATGCCTCCTCGACGCACCAAGCCGAGTCCTCCATAACT
CCGGGTGCCGAGGCGCCTATCGTTGCGGCCGCGTTCGGGGAAGCCTTCGC
CGCCTTCTGCGGATTTTTCGCGCTTTTCGAATAGCCCGACGACGCTAGCC
CCGTCCCGGAGGGCTCCTCCGGCGGCATTCCTTCCGTTTGCGCCGCCCCC
TGGTCGGCATCTTTACCCCCGCCGCCCTCCTGGGCGACAGAGGCTTCGCG
CGACTCTTTTCGAGACGCAGGTCCGCTGGATTTTTGACCCGGGTTCCCTG
GTCGCCGAACCGGCCCCTCTACGTTTCGAACGCCTTCGTCCTCGACCCAG
GCA
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Coding sequence (CDS) from alignment at S-dermatodea_contig11708:3362..3914+

>mRNA_S-dermatodea_contig11708.1090.1 ID=mRNA_S-dermatodea_contig11708.1090.1|Name=mRNA_S-dermatodea_contig11708.1090.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=696bp|location=Sequence derived from alignment at S-dermatodea_contig11708:3362..3914+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCTTTCGCCTCCCTCGCCAGCCGCGGCGGCGCCACTGGTTGTAGCACGGC
CACCACGCCCAGAAAAAGTGCGTACGGTAGCGGTGGCCTCGCCGCCCACA
AGGACGCTCCCGAAGCCCACCTCGGAGAGAGACGGGCCCGTTCCCGCATC
GGTTTCGCTATCGACTACGCCTTTCTCCGTCTGAGCATCCAGCTCTGGAG
GTGGCATCACGCATGCCTCCTCGACGCACCAAGCCGAGTCCTCCATAACT
CCGGGTGCCGAGGCGCCTATCGTTGCGGCCGCGTTCGGGGAAGCCTTCGC
CGCCTTCTGCGGATTTTTCGCGCTTTTCGAATAGCCCGACGACGCTAGGC
TTTCGCCTCCCTCGCCAGCCGCGGCGGCGCCACTGGTTGTAGCACGGCCA
CCACGCCCAGAAAAAGTGCGTACGGTAGCGGTGGCCTCGCCGCCCACAAG
GACGCTCCCGAAGCCCACCTCGGAGAGAGACGGGCCCGTTCCCGCATCGG
TTTCGCTATCGACTACGCCTTTCTCCGTCTGAGCATCCAGCTCTGGAGGT
GGCATCACGCATGCCTCCTCGACGCACCAAGCCGAGTCCTCCATAACTCC
GGGTGCCGAGGCGCCTATCGTTGCGGCCGCGTTCGGGGAAGCCTTCGCCG
CCTTCTGCGGATTTTTCGCGCTTTTCGAATAGCCCGACGACGCTAG
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