mRNA_S-dermatodea_contig11707.1086.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11707.1086.1
Unique NamemRNA_S-dermatodea_contig11707.1086.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11707.1086.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11707contigS-dermatodea_contig11707:2998..4448 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size547
Cds size546
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11707.1086.1prot_S-dermatodea_contig11707.1086.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11707 2998..4447 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924214.9140441-CDS-S-dermatodea_contig11707:2997..32251622924214.9140441-CDS-S-dermatodea_contig11707:2997..3225Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11707 2998..3225 +
1694079098.4793143-CDS-S-dermatodea_contig11707:2997..32251694079098.4793143-CDS-S-dermatodea_contig11707:2997..3225Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11707 2998..3225 +
1622924214.929899-CDS-S-dermatodea_contig11707:3740..39681622924214.929899-CDS-S-dermatodea_contig11707:3740..3968Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11707 3741..3968 +
1694079098.4997103-CDS-S-dermatodea_contig11707:3740..39681694079098.4997103-CDS-S-dermatodea_contig11707:3740..3968Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11707 3741..3968 +
1622924214.9396362-CDS-S-dermatodea_contig11707:4357..44471622924214.9396362-CDS-S-dermatodea_contig11707:4357..4447Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11707 4358..4447 +
1694079098.5133233-CDS-S-dermatodea_contig11707:4357..44471694079098.5133233-CDS-S-dermatodea_contig11707:4357..4447Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11707 4358..4447 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11707.1086.1

>prot_S-dermatodea_contig11707.1086.1 ID=prot_S-dermatodea_contig11707.1086.1|Name=mRNA_S-dermatodea_contig11707.1086.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=182bp
VEGLLGLRKPTLPGVKPWFGGWLLQVEDDGNCTGSSQLALALVWGVQKRR
RLDYLVNHLHAAKKAGAFATTDRDVQGYVASFCSYVSSLHGRADKDCGVA
LAVEVVETLLGHTADGARGGQQDYVALHRGVVVVSRLLDLWQAPESIDHH
DLGTLKKVNSSVEMTVGGADFDLMRPGRGLSL
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mRNA from alignment at S-dermatodea_contig11707:2998..4448+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11707.1086.1 ID=mRNA_S-dermatodea_contig11707.1086.1|Name=mRNA_S-dermatodea_contig11707.1086.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1451bp|location=Sequence derived from alignment at S-dermatodea_contig11707:2998..4448+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTGGAGGGCCTGCTGGGCCTCCGGAAGCCGACGCTCCCAGGCGTGAAGCC
GTGGTTCGGTGGATGGTTGCTCCAGGTAGAGGACGATGGGAACTGCACGG
GCAGTTCGCAGTTGGCGTTGGCCTTGGTCTGGGGTGTCCAGAAGCGTCGC
AGGCTCGACTATCTCGTCAACCATTTGCATGCCGCCAAGAAGGCCGGGGC
GTTCGCGACAACAGACCGGGACGTGCAGGTGTTGTTCACCCCGGGGTCGT
TTACGTCTAGGGTTTTGGTGCCGTAGCCCGTGGAGCATGAGCACAGTGTC
GTCGGCAGGAATCCTGGCCGGGTTCGAATTTTCAATCATCATTTTTCGCC
TACGATATTTCCAGTTCGTTTCCAGTCACAACAAGAGCGCCTGGAAACGC
CTGACAGTTAGTTGTATGCACTTGGTTGGTGCGATCGGACTGGTGCACCT
TGATCCGTCACCTTCTCCACTCCCTCTCTTTGACGCACTTTACTCCTCCC
CTCTCCACTCCTTTCCCTTCCCTCCCCTTCCCTTCCCTTCCCTTCCCTTC
CCTTCCCTCCCCCCCCCCCCCTCCCTCAAATCCCCCCGCCTCTCCCCCCT
CCCCCTTCCTCACCTCACCCACGCACCCACTTTCCNNNNNNNNNNCCCCT
TCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCT
TCCCTTCCCTTCCCTTCCCTCTTCCCCCCTCCGTGGCGCAAAGGGCTACG
TCGCTTCGTTCTGCTCTTACGTCAGCAGCCTTCACGGCAGAGCTGACAAG
GACTGCGGGGTTGCCCTTGCGGTAGAGGTCGTGGAAACTCTCCTCGGCCA
CACCGCCGACGGGGCAAGGGGGGGGCAGCAAGACTACGTGGCGCTTCACA
GGGGCGTTGTGGTGGTGTCAAGGCTACTGGATTTGTGGCAGGCACCGGAG
TCCATCGACCATCATGATTTGGTGAGCGGGGCAGCTTGTTCCGGGTTTCG
GTAGTTCGTCGCAACCTGTGTCAACGGACCCCTTCGACGAGCGGATCGTT
GGAAGTAGGTTGTATCCGTTGGAGGAAAAGCTGTCAGGGTGCACTCAAGC
GCTCTCCGGCGCAACTCTAACAGTCGCTGTGGGTGGCTCCAACAGATGGG
GTGCCGCTCAGTGGAAACATGCCTAGTGTTCATCCCTTTGTTGAGATGGT
TTCTACAGCCTCTAACGAGCAAGCATTTTGCCGTGCTGTTGGGGTTCAGC
TAACCTGCGTGTCGTTCTATGTACTAACCTTGCCGCGTTCCCGGCGTACC
ACGTCACCCGCTATTCCAACCATCCTCTGGCTGGTCAACCTTTGTGCATT
TGCAACACAGGGCACGCTGAAGAAGGTCAACTCCTCGGTGGAGATGACCG
TCGGCGGTGCCGACTTCGACCTGATGCGGCCCGGCCGCGGCCTTAGTCTC
G
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Coding sequence (CDS) from alignment at S-dermatodea_contig11707:2998..4448+

>mRNA_S-dermatodea_contig11707.1086.1 ID=mRNA_S-dermatodea_contig11707.1086.1|Name=mRNA_S-dermatodea_contig11707.1086.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1092bp|location=Sequence derived from alignment at S-dermatodea_contig11707:2998..4448+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTGGAGGGCCTGCTGGGCCTCCGGAAGCCGACGCTCCCAGGCGTGAAGCC
GTGGTTCGGTGGATGGTTGCTCCAGGTAGAGGACGATGGGAACTGCACGG
GCAGTTCGCAGTTGGCGTTGGCCTTGGTCTGGGGTGTCCAGAAGCGTCGC
AGGCTCGACTATCTCGTCAACCATTTGCATGCCGCCAAGAAGGCCGGGGC
GTTCGCGACAACAGACCGGGACGTGCAGGTGGAGGGCCTGCTGGGCCTCC
GGAAGCCGACGCTCCCAGGCGTGAAGCCGTGGTTCGGTGGATGGTTGCTC
CAGGTAGAGGACGATGGGAACTGCACGGGCAGTTCGCAGTTGGCGTTGGC
CTTGGTCTGGGGTGTCCAGAAGCGTCGCAGGCTCGACTATCTCGTCAACC
ATTTGCATGCCGCCAAGAAGGCCGGGGCGTTCGCGACAACAGACCGGGAC
GTGCAGGGCTACGTCGCTTCGTTCTGCTCTTACGTCAGCAGCCTTCACGG
CAGAGCTGACAAGGACTGCGGGGTTGCCCTTGCGGTAGAGGTCGTGGAAA
CTCTCCTCGGCCACACCGCCGACGGGGCAAGGGGGGGGCAGCAAGACTAC
GTGGCGCTTCACAGGGGCGTTGTGGTGGTGTCAAGGCTACTGGATTTGTG
GCAGGCACCGGAGTCCATCGACCATCATGATTTGGGCTACGTCGCTTCGT
TCTGCTCTTACGTCAGCAGCCTTCACGGCAGAGCTGACAAGGACTGCGGG
GTTGCCCTTGCGGTAGAGGTCGTGGAAACTCTCCTCGGCCACACCGCCGA
CGGGGCAAGGGGGGGGCAGCAAGACTACGTGGCGCTTCACAGGGGCGTTG
TGGTGGTGTCAAGGCTACTGGATTTGTGGCAGGCACCGGAGTCCATCGAC
CATCATGATTTGGGCACGCTGAAGAAGGTCAACTCCTCGGTGGAGATGAC
CGTCGGCGGTGCCGACTTCGACCTGATGCGGCCCGGCCGCGGCCTTAGTC
TCGGCACGCTGAAGAAGGTCAACTCCTCGGTGGAGATGACCGTCGGCGGT
GCCGACTTCGACCTGATGCGGCCCGGCCGCGGCCTTAGTCTC
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