mRNA_S-dermatodea_contig11701.1083.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11701.1083.1
Unique NamemRNA_S-dermatodea_contig11701.1083.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig11701.1083.1 vs. uniprot
Match: D8LF38_ECTSI (Divalent metal transporter n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LF38_ECTSI)

HSP 1 Score: 431 bits (1107), Expect = 2.040e-143
Identity = 218/276 (78.99%), Postives = 246/276 (89.13%), Query Frame = 1
Query:    1 QATKYYTIDSGIALLVAFLINLAVVCTFAKQFYDDSCATASVASACFVGDSIDPSQPNYGVCDVDGTGVCQEIGLSAAAAALKGTLGQSAKYIWAVGLLAAGQSSTMTGTYAGQFVMEGFLQLKIPKWQRVLLTRVIALGPALAVTVFMGGDIRATDRMSAWLNVLQSLQLPFAIIPLLTFCNSQRIMGAFTISAPLTVFVWMVSVGVIGINIFIVGGFLVEQGDSKSGGE--WLYAGAALGGFLYLGFILFLMWEDLRKLRSQGCAIFMKLGTYD 822
            +ATKYYTIDSGIAL+VAF+INLAVVCTFAKQFYD++CATAS  SACFVGDSIDP+QP+YG CD DGTG+CQEIGLSAAAAAL+GTLG SAKY+WAVGLLAAGQSSTMTGTYAGQFVMEGFLQLKIPKWQRVL+TR+IALGPALAVTVFMGGDIRATDR+SAWLNVLQSLQLPFAIIPLLTFCNS  +MG FTI++ +T FVWMVS+G+IGINI IV GFL ++G S  G    WLYA  A+G  LYLGFILFLM EDL+KLR +  ++F +LG +D
Sbjct:  308 EATKYYTIDSGIALMVAFMINLAVVCTFAKQFYDETCATASEPSACFVGDSIDPTQPSYGSCDADGTGLCQEIGLSAAAAALRGTLGSSAKYVWAVGLLAAGQSSTMTGTYAGQFVMEGFLQLKIPKWQRVLVTRIIALGPALAVTVFMGGDIRATDRLSAWLNVLQSLQLPFAIIPLLTFCNSPHVMGEFTITSSMTAFVWMVSIGIIGINISIVLGFLFDEGISSEGAAAPWLYACTAIGASLYLGFILFLMREDLQKLRRRAESLFWELGRHD 583          
BLAST of mRNA_S-dermatodea_contig11701.1083.1 vs. uniprot
Match: A0A835YZC9_9STRA (Divalent metal transporter n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZC9_9STRA)

HSP 1 Score: 281 bits (719), Expect = 2.000e-85
Identity = 151/261 (57.85%), Postives = 187/261 (71.65%), Query Frame = 1
Query:    1 QATKYYTIDSGIALLVAFLINLAVVCTFAKQFYDDSCATASVASACFVGDSIDPSQPNYGVCDVDGTGVCQEIGLSAAAAALKGTLGQSAKYIWAVGLLAAGQSSTMTGTYAGQFVMEGFLQLKIPKWQRVLLTRVIALGPALAVTVFMGGDIRATDRMSAWLNVLQSLQLPFAIIPLLTFCNSQRIMGAFTISAPLTVFVWMVSVGVIGINIFIVGGFLVEQGDSKSGGEWLYAGAALG--GFLYLGFILFLMWEDLRKL 777
            +A KY TIDS +AL +AFLINLAVV TFA QFY   C    + +AC    SID   P +G C   G GVCQEIGL  A  AL+G+LG +AKY+WA+GLLAAGQSSTMTGTYAGQFVMEGFLQL I +WQRV+LTR IALGPAL VTV M G   ATDR+S WLNVLQS+QLPFA+IPL+ FC S+R+MG FT+   +T  +W++++G+IGIN++ V  F  +  D+      + +   +   G LYL F L+LMWEDL +L
Sbjct:  256 EAVKYCTIDSALALGLAFLINLAVVGTFAVQFYSVDCINTRMPTACLTLGSIDRDSPTFGTC-AKGLGVCQEIGLGHAGDALRGSLGSNAKYVWAIGLLAAGQSSTMTGTYAGQFVMEGFLQLSIAQWQRVMLTRTIALGPALLVTVLMHGKGTATDRLSEWLNVLQSVQLPFALIPLVHFCGSKRLMGEFTVGRSMTALLWVLTIGMIGINLYTVLDFFFDD-DAPKESTTISSRIMIFTVGTLYLSFCLYLMWEDLLRL 514          
BLAST of mRNA_S-dermatodea_contig11701.1083.1 vs. uniprot
Match: A0A4D9D1G8_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D1G8_9STRA)

HSP 1 Score: 206 bits (525), Expect = 5.600e-58
Identity = 121/259 (46.72%), Postives = 160/259 (61.78%), Query Frame = 1
Query:    1 QATKYYTIDSGIALLVAFLINLAVVCTFAKQFYDDSCATASVAS-ACFVGDSIDPSQPNYGVCDVDGTGVCQEIGLSAAAAALKGTLGQSAKYIWAVGLLAAGQSSTMTGTYAGQFVMEGFLQLKIPKWQRVLLTRVIALGPALAVTVFMGGDIRATDRMSAWLNVLQSLQLPFAIIPLLTFCNSQRIMGAFTISAPLTVFVWMVSVGVIGINIFIVGGFLVEQGDSKSGGEWLYAGAALGGFLYLGFILFLMWEDLRK 774
            +A KY+ IDS IAL V+F+INLAVV  FA  F+D  CATA     AC        S+   GVCD      CQ IGL+ A  AL   LG+SAKYIWAVGLLAAGQ+STMTGTYAGQ+VMEGFL L+IP W RV  TR +A+GP L V +    +   +DR    +NV  S+ L F+++P+L F +S  IMG    S PLT+ +W+++ GV+ INI++V   ++  G  +    W+Y    + G +YL F   L+ ED+  
Sbjct:  206 EANKYFAIDSAIALTVSFVINLAVVSVFAYHFFDHGCATAPGGPLACL-------SRTEEGVCD------CQLIGLAGAHDALAEALGKSAKYIWAVGLLAAGQASTMTGTYAGQYVMEGFLDLQIPLWARVTFTRFVAIGPGLVVAILTENNQNLSDRFQEAINVFNSVLLSFSLLPVLHFTSSSVIMGEHVSSLPLTITIWVLAFGVLAINIYLV---VLRIGAGQP--WWVYVVTTVVGVIYLAFSYSLVQEDIEN 446          
BLAST of mRNA_S-dermatodea_contig11701.1083.1 vs. uniprot
Match: A0A067BSV6_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BSV6_SAPPC)

HSP 1 Score: 197 bits (502), Expect = 4.660e-56
Identity = 118/264 (44.70%), Postives = 169/264 (64.02%), Query Frame = 1
Query:    1 QATKYYTIDSGIALLVAFLINLAVVCTFAKQFYDDSCA----TASVASACFVGDSIDPSQPNYGVCDV-DGT-GVCQEIGLSAAAAALKGTLGQSAKYIWAVGLLAAGQSSTMTGTYAGQFVMEGFLQLKIPKWQRVLLTRVIALGPALAVTVFMGGDIRATDRMSAWLNVLQSLQLPFAIIPLLTFCNSQRIMGAFTISAPLTVFVWMVSVGVIGINIFIVGGFLVEQGDSKSGGEWLYAGAALGGFLYLGFILFLMWEDLRK 774
            +A KY+TI+S +AL V+FLINLAV+C FAK F+   C     T  V +AC   ++   +  +YG C + +G+ GVCQEIGLS A  AL+G L + ++ IWA+GLLAAGQSSTM GTYAGQFVMEGFL++++  W+RV LTR +AL PALAV ++      A+D +   LNVLQS+QLPFA++P+L F +   +MGAF  S       W V++ V  +N+++V    V++ D    G          G  Y+ F+ +L+  +L++
Sbjct:  102 EANKYFTIESAVALFVSFLINLAVMCVFAKGFFSPDCLQSFETHGVNTACVPLNT--STTESYGSCQLMEGSRGVCQEIGLSGAGLALRGVLDEYSETIWAIGLLAAGQSSTMAGTYAGQFVMEGFLRIQLAPWKRVALTRAVALVPALAVAIWSDTQPGASDTIGEMLNVLQSIQLPFALLPILHFTSHAGLMGAFVNSTTTKAAGWAVALLVCLVNLYLV----VQKVDVSEMGPVSLLAFFSAGTGYVAFLAYLVHTELQQ 359          
BLAST of mRNA_S-dermatodea_contig11701.1083.1 vs. uniprot
Match: W7TP25_9STRA (2-isopropylmalate synthase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TP25_9STRA)

HSP 1 Score: 208 bits (530), Expect = 8.410e-56
Identity = 122/259 (47.10%), Postives = 161/259 (62.16%), Query Frame = 1
Query:    1 QATKYYTIDSGIALLVAFLINLAVVCTFAKQFYDDSCATASVAS-ACFVGDSIDPSQPNYGVCDVDGTGVCQEIGLSAAAAALKGTLGQSAKYIWAVGLLAAGQSSTMTGTYAGQFVMEGFLQLKIPKWQRVLLTRVIALGPALAVTVFMGGDIRATDRMSAWLNVLQSLQLPFAIIPLLTFCNSQRIMGAFTISAPLTVFVWMVSVGVIGINIFIVGGFLVEQGDSKSGGEWLYAGAALGGFLYLGFILFLMWEDLRK 774
            +A KY+ IDS IAL V+F+INLAVV  FA  F+D  CATA     AC        S+   GVCD      CQ IGL+ A  AL   LG+SAKYIWAVGLLAAGQ+STMTGTYAGQ+VMEGFL L+IP W RV  TR +A+GP L V +    +   +DR    +NV  S+ L F+++P+L F +S  IMG    S PLT+ +W+++ GV+ INI++V   ++  G  +    W+Y   A+ G +YL F   L+ ED+  
Sbjct: 1113 EANKYFAIDSAIALTVSFVINLAVVSVFAYHFFDHGCATAPGGPLACL-------SRTEEGVCD------CQLIGLAGAHDALAEALGKSAKYIWAVGLLAAGQASTMTGTYAGQYVMEGFLDLQIPLWARVTFTRFVAIGPGLVVAILTENNQNLSDRFQEAINVFNSVLLSFSLLPVLHFTSSSVIMGEHVSSLPLTITIWVLAFGVLAINIYLV---VLRIGAGQP--WWVYVVTAVVGLIYLAFSYSLVQEDIEN 1353          
BLAST of mRNA_S-dermatodea_contig11701.1083.1 vs. uniprot
Match: W4FTC8_9STRA (Uncharacterized protein n=9 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FTC8_9STRA)

HSP 1 Score: 201 bits (511), Expect = 1.410e-55
Identity = 117/270 (43.33%), Postives = 169/270 (62.59%), Query Frame = 1
Query:    1 QATKYYTIDSGIALLVAFLINLAVVCTFAKQFYDDSCATA----SVASACF---VGDSIDPSQPNYGVCDVDGT-GVCQEIGLSAAAAALKGTLGQSAKYIWAVGLLAAGQSSTMTGTYAGQFVMEGFLQLKIPKWQRVLLTRVIALGPALAVTVFMGGDIRATDRMSAWLNVLQSLQLPFAIIPLLTFCNSQRIMGAFTISAPLTVFVWMVSVGVIGINIFIVGGFLVEQGDSKSGGEWLYAGAALGGFLYLGFILFLMWEDLRKLRSQ 786
            QA KY+ I+  +AL V+FLINLAVVC FA+ F+   C  +     + +AC      DS+      YG CD+ GT GVCQEIGLS A  AL+G L   ++ IWAVGLLAAGQSSTM GTYAGQFVMEGFL +++P W+R+ LTR +AL PAL+V ++       +D M+ +LNVLQS+QLPFA+IP+L F ++  +MG F     + +  W +++ V  +NI++V    V++    +           GG  Y  F+ +L+  ++++L ++
Sbjct:  290 QANKYFAIEGAVALFVSFLINLAVVCVFAQSFFSLDCLPSFDIHGINTACLPLGASDSL-----IYGRCDLAGTPGVCQEIGLSGAGIALRGVLNSYSETIWAVGLLAAGQSSTMAGTYAGQFVMEGFLSIRLPPWKRMALTRAVALVPALSVAMWSESRPSESDSMNEFLNVLQSVQLPFALIPILHFTSNPVVMGTFANGRTMRLVGWAMTLVVCFVNIYLV----VDKVPLATLAPLAQTATVGGGLAYFAFLTYLVALEVKRLVAE 550          
BLAST of mRNA_S-dermatodea_contig11701.1083.1 vs. uniprot
Match: A0A7S3YHG8_9EUKA (Hypothetical protein n=3 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3YHG8_9EUKA)

HSP 1 Score: 202 bits (513), Expect = 3.090e-55
Identity = 112/271 (41.33%), Postives = 166/271 (61.25%), Query Frame = 1
Query:    1 QATKYYTIDSGIALLVAFLINLAVVCTFAKQFYDDSCAT------ASVASACFV--GDSIDPSQ-PNYGVCDVDGTGVCQEIGLSAAAAALKGTLGQSAKYIWAVGLLAAGQSSTMTGTYAGQFVMEGFLQLKIPKWQRVLLTRVIALGPALAVTVFMGGDIRATDRMSAWLNVLQSLQLPFAIIPLLTFCNSQRIMGAFTISAPLTVFVWMVSVGVIGINIFIVGGFLVEQGDSKSGGEWLYAGAALGGFLYLGFILFLMWEDLRKLRSQ 786
            +A KY  I+S IAL+V+F IN A+V TF + F++  C++      A + S   +  G+  DP+Q P+       G GVC EIGLS+A  ALK  LG +AKYIW  GLLA+GQ+STMTGTYAGQFVM+GFLQ+++  W R ++TR +ALGPA+AV +         D +  WLN+LQS+QLPFA++P+L   ++  IMG FT    L +  W  ++GV  +N+++V  F  +  +     +W  A   +   +Y  FI +++++ L+  R  
Sbjct:  329 EAIKYNAIESAIALIVSFFINAAIVVTFQRGFFNRECSSNFDRNYACLDSRAGIPDGNVFDPTQTPSSCASRFGGHGVCAEIGLSSAGDALKQFLGDAAKYIWGFGLLASGQASTMTGTYAGQFVMQGFLQIQVAPWLRTMITRSVALGPAVAVALATAHSPDLGDELGEWLNILQSVQLPFALLPVLMLTSAPAIMGQFTNRLTLKIIGWTAAIGVFAVNVYLVVSFCFDATNPVPDADWFRAIVIVFLVIYFIFIAYVVYDGLKGTRKS 599          
BLAST of mRNA_S-dermatodea_contig11701.1083.1 vs. uniprot
Match: H3GQQ0_PHYRM (Uncharacterized protein n=30 Tax=Phytophthora TaxID=4783 RepID=H3GQQ0_PHYRM)

HSP 1 Score: 200 bits (509), Expect = 3.780e-55
Identity = 131/268 (48.88%), Postives = 162/268 (60.45%), Query Frame = 1
Query:    1 QATKYYTIDSGIALLVAFLINLAVVCTFAKQFYDDSCATA----SVASACFVGDSIDPSQPNYGVCDV--DGTGVCQEIGLSAAAAALKGTLGQSAKYIWAVGLLAAGQSSTMTGTYAGQFVMEGFLQLKIPKWQRVLLTRVIALGPALAVTVFMGGDIRATDRMSAWLNVLQSLQLPFAIIPLLTFCNSQRIMGAFTISAPLTVFVWMVSVGVIGINIFIVGGFLVEQGDSKSGGEWLYAGA----ALGGF--LYLGFILFLMWEDL 768
            +A KY+ I+SG AL V+FLINLAV+  FAK F+   C ++     V +AC  G   D     YG C +   G G+CQEIGLS A  AL G LGQ A  IWAVGLLAAGQSSTMTGTYAGQFVMEGFLQL I  W+RV LTR ++L PA+ V +    +   +D M   LNVLQS+QLPFA++P+L F +S  IMG F  S    V  WM+   V  IN++++   L          E L  GA    ALGG   LY GF+ +L   D+
Sbjct:  293 EANKYFAIESGFALFVSFLINLAVLAVFAKGFFSPDCTSSYDSTGVNTACVPGAIADGE--TYGHCQLASGGEGMCQEIGLSQAGVALSGMLGQYADIIWAVGLLAAGQSSTMTGTYAGQFVMEGFLQLHISPWKRVALTRCVSLVPAMTVAILSQQNPADSDHMDELLNVLQSIQLPFALLPVLIFTSSPAIMGDFANSKATVVAGWMLGGLVCVINLYLIFTNL----------EGLALGAVGLVALGGTCCLYFGFLGYLARADM 548          
BLAST of mRNA_S-dermatodea_contig11701.1083.1 vs. uniprot
Match: A0A8K1CE46_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CE46_PYTOL)

HSP 1 Score: 199 bits (506), Expect = 7.910e-55
Identity = 122/261 (46.74%), Postives = 160/261 (61.30%), Query Frame = 1
Query:    1 QATKYYTIDSGIALLVAFLINLAVVCTFAKQFYDDSCATA----SVASACFVGDSIDPSQPNYGVCDV--DGTGVCQEIGLSAAAAALKGTLGQSAKYIWAVGLLAAGQSSTMTGTYAGQFVMEGFLQLKIPKWQRVLLTRVIALGPALAVTVFMGGDIRATDRMSAWLNVLQSLQLPFAIIPLLTFCNSQRIMGAFTISAPLTVFVWMVSVGVIGINIFIVGGFLVEQGDSKSGGEWLYAGAALGGFLYLGFILFLMWED 765
            +A KY+ I+SG AL+V+FLINLAV+  FAK F+   C+ +     V SAC  G + D     YG C +    +G+CQ IGLS A +AL   LG  A+ IWAVGLLAAGQSSTMTGTYAGQFVMEGFL L++  W+RV  TR +AL PAL V +    + + +DRM   LNVLQS+QLPFA++P+L F +S+RIMG F  S       W + V V  +N+++V    V   D   G    +    L G  Y  F+ +L+  D
Sbjct:  287 EANKYFAIESGGALIVSFLINLAVLAVFAKGFFSPDCSASFDQFGVNSACVPGGAADGD--TYGTCTLANGASGMCQSIGLSQAGSALSEMLGGYAEIIWAVGLLAAGQSSTMTGTYAGQFVMEGFLNLRLSPWKRVAFTRCVALVPALVVAILSEENPQDSDRMDEMLNVLQSIQLPFALLPVLVFTSSKRIMGDFANSVQSIALGWALGVVVCIVNLYLV---TVNLKDMDLG-PVSFGSILLVGCAYFWFLAYLVQSD 541          
BLAST of mRNA_S-dermatodea_contig11701.1083.1 vs. uniprot
Match: A0A7S3YLW2_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YLW2_HETAK)

HSP 1 Score: 197 bits (500), Expect = 4.150e-54
Identity = 127/276 (46.01%), Postives = 164/276 (59.42%), Query Frame = 1
Query:    1 QATKYYTIDSGIALLVAFLINLAVVCTFAKQFYDDSCATASVASACFVG--DSIDPSQPNYGVC-DVDGTGVCQEIGLSAAAAALKGTLGQSAKYIWAVGLLAAGQSSTMTGTYAGQFVMEGFLQLKIPKWQRVLLTRVIALGPALAVTVFMGGDIRATDRMSAWLNVLQSLQLPFAIIPLLTFCNSQRIMGAFTISAPLTVFVWMVSVGVI----GINIFIVGGFLVEQGDSKSGGEW-LYAGAALGGFLYLGFIL---FLMWEDLRKLRSQGCA 795
            QA KY  +DS I+L ++F+INLAV+ +FA  FY  +CA AS  SAC     D I+PSQ  YG C +  G G C E+GLS A   L  TLG +AK +WAVGLLA+GQSSTMTG YAGQFV EGFL++ IP+W  VL+TR +AL PAL V V    +   +D +  WLN+LQS+QLPFA+ PLL F  S +IMG F +S      +W    G+I    G+N++I    L +    ++   W L A  A    LYL  I    + +W    K R    A
Sbjct:  244 QALKYTYLDSAISLFISFVINLAVIGSFAYNFYSPTCARASTMSACVNHPLDGIEPSQL-YGDCTNTLGAGQCMEVGLSQAGDVLGRTLGATAKALWAVGLLASGQSSTMTGAYAGQFVFEGFLRIPIPRWLSVLVTRCVALVPALLVAVGSMSNPVLSDVLQQWLNILQSIQLPFALFPLLFFLASPKIMGQFAVSR----IMWWALAGIIATLLGMNLYITQTSLPDTSGLEADLTWGLSAALAALAALYLYVIAALTYFLWRGTGKGRHVAVA 514          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11701.1083.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LF38_ECTSI2.040e-14378.99Divalent metal transporter n=2 Tax=Ectocarpus TaxI... [more]
A0A835YZC9_9STRA2.000e-8557.85Divalent metal transporter n=1 Tax=Tribonema minus... [more]
A0A4D9D1G8_9STRA5.600e-5846.72Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A067BSV6_SAPPC4.660e-5644.70Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
W7TP25_9STRA8.410e-5647.102-isopropylmalate synthase n=1 Tax=Nannochloropsis... [more]
W4FTC8_9STRA1.410e-5543.33Uncharacterized protein n=9 Tax=Aphanomyces astaci... [more]
A0A7S3YHG8_9EUKA3.090e-5541.33Hypothetical protein n=3 Tax=Lotharella globosa Ta... [more]
H3GQQ0_PHYRM3.780e-5548.88Uncharacterized protein n=30 Tax=Phytophthora TaxI... [more]
A0A8K1CE46_PYTOL7.910e-5546.74Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S3YLW2_HETAK4.150e-5446.01Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11701contigS-dermatodea_contig11701:4869..6881 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score246.1
Seed ortholog evalue1.9e-62
Seed eggNOG ortholog2880.D8LF38
KEGG rclassRC00005,RC00017,RC00049,RC02748
KEGG koko:K16055,ko:K21398
KEGG TC2.A.55.2.1,2.A.55.2.2
KEGG ReactionR02737,R02778
KEGG Pathwayko00500,ko01100,ko04142,ko04216,ko04978,map00500,map01100,map04142,map04216,map04978
EggNOG free text desc.transition metal ion homeostasis
EggNOG OGsCOG1914@1,KOG1291@2759
EC2.4.1.15,3.1.3.12
COG Functional cat.P
CAZyGT20
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01003,ko02000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptiondivalent metal transporter
Ec32 orthologEc-06_001530.1
Exons3
Model size1210
Cds size822
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11701.1083.1prot_S-dermatodea_contig11701.1083.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11701 4939..6240 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924214.5888147-UTR-S-dermatodea_contig11701:4868..49381622924214.5888147-UTR-S-dermatodea_contig11701:4868..4938Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11701 4869..4938 -
1694079098.2717402-UTR-S-dermatodea_contig11701:4868..49381694079098.2717402-UTR-S-dermatodea_contig11701:4868..4938Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11701 4869..4938 -
1622924214.6149268-UTR-S-dermatodea_contig11701:6240..62611622924214.6149268-UTR-S-dermatodea_contig11701:6240..6261Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11701 6241..6261 -
1694079098.298308-UTR-S-dermatodea_contig11701:6240..62611694079098.298308-UTR-S-dermatodea_contig11701:6240..6261Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11701 6241..6261 -
1622924214.625434-UTR-S-dermatodea_contig11701:6584..68811622924214.625434-UTR-S-dermatodea_contig11701:6584..6881Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11701 6585..6881 -
1694079098.3061352-UTR-S-dermatodea_contig11701:6584..68811694079098.3061352-UTR-S-dermatodea_contig11701:6584..6881Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11701 6585..6881 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924214.5969589-CDS-S-dermatodea_contig11701:4938..55271622924214.5969589-CDS-S-dermatodea_contig11701:4938..5527Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11701 4939..5527 -
1694079098.2824078-CDS-S-dermatodea_contig11701:4938..55271694079098.2824078-CDS-S-dermatodea_contig11701:4938..5527Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11701 4939..5527 -
1622924214.6049976-CDS-S-dermatodea_contig11701:6007..62401622924214.6049976-CDS-S-dermatodea_contig11701:6007..6240Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11701 6008..6240 -
1694079098.2904062-CDS-S-dermatodea_contig11701:6007..62401694079098.2904062-CDS-S-dermatodea_contig11701:6007..6240Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11701 6008..6240 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11701.1083.1

>prot_S-dermatodea_contig11701.1083.1 ID=prot_S-dermatodea_contig11701.1083.1|Name=mRNA_S-dermatodea_contig11701.1083.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=274bp
MTGTYAGQFVMEGFLQLKIPKWQRVLLTRVIALGPALAVTVFMGGDIRAT
DRMSAWLNVLQSLQLPFAIIPLLTFCNSQRIMGAFTISAPLTVFVWMVSV
GVIGINIFIVGGFLVEQGDSKSGGEWLYAGAALGGFLYLGFILFLMWEDL
RKLRSQGCAIFMKLGTYDVVGGYSYSAPDTFGQDDSHDGCSGVERSGGFP
SEDDDKQPLAPQLGAGSSAAVGSAYAPVSGGPNDSREGNSGENGAIRGEN
GRGSVARAEDAHRNGEGRGDSRV*
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mRNA from alignment at S-dermatodea_contig11701:4869..6881-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11701.1083.1 ID=mRNA_S-dermatodea_contig11701.1083.1|Name=mRNA_S-dermatodea_contig11701.1083.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2013bp|location=Sequence derived from alignment at S-dermatodea_contig11701:4869..6881- (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGCGACGAAATATTACACGATAGACAGCGGCATCGCGCTCCTGGTGGC GTTCCTCATCAACCTTGCCGTCGTGTGCACCTTCGCCAAGCAATTCTACG ACGATTCGTGCGCGACCGCGTCCGTCGCGTCGGCCTGCTTCGTTGGCGAC TCGATCGACCCCTCGCAACCCAACTACGGCGTCTGTGACGTGGACGGGAC CGGAGTGTGCCAGGAGATTGGGTTGTCCGCTGCTGCCGCTGCGCTCAAGG GGACGCTGGGGCAGTCAGCGAAATATATCTGGGCCGTCGGTCTGCTGGTG AGGACGGGCGCCTGGAATGGTGGACTGCCCGCGCGGTTGGCAGTTGGCGG TGGTTTGAGTTGTCGCTCGCTCGTGGCTTTTGGACGCTTTGGCCCGTCAC TCGCCGCGGTTAGGTTGAAATTGTTACTGTACGTTCCACGCTATCCCCGG TTCGTGGGGAAGCTTGCAGCACAGGGTATGTTTTGAGCGCGCGGGTTCTT GACAGCAGCGCACATAAGGGCACGCGCCGTGTCGACACCGCAAGGCGCGC TCATTTATCGATCCATGCGACAAGGTAGCAGCCATACCCTGACGTCGAAT GCCACCCGTACGCTACACAGGCCGCGGGGCAAAGCAGCACGATGACGGGG ACGTACGCGGGGCAGTTTGTGATGGAAGGCTTCCTTCAGCTCAAAATCCC GAAGTGGCAGAGGGTGCTGCTCACGCGAGTCATCGCCCTGGGCCCCGCAC TCGCGGTGACGGTGTTCATGGGGGGGGATATCCGCGCTACGGACCGCATG AGCGCTTGGCTGAATGTGCTGCAGAGCCTGCAGCTGCCGTTCGCGATCAT CCCGCTCCTGACCTTTTGTAACAGGTGGGGGTCTCCGCCGCTATTTTCGC AAAAAAAAACAATTTGCTGCAGAGAGGTGGTTGATTGCGCGCTTCGGAGT TGCAGCAGTTGCGAAGGCATTCGTTGGGTATTGTGTCATACGCACACCGC ACATCCGAACTTGAACCTTTTCGCTCTCACGAACGCATCTTACTATTATA GTAATGCATTGTCTCTGGCGAGGGGACTCCCACCAACGATGCAGTCCTTC CTTGCACACACCCTTGCCAGGGCGTTTTTTGTTTTTTCCCCGTGTTGTTG AAGGGGAAAAAATTGGGCGATGGGGTGGGGGATGGCAGATTATTTCCCGC AAAAGTACCCTTGGTCCAGCGTTGCCCAAAAATCGTGGGAACCCGTTTCG ACCCCGACGTTTCATTGCAAGTGATACATACATTAACCGACGACAGCGAG CCCCCCCCCCTCCCTCCCCCCCCCTCCCGGTGTGTATCACGCCTCCTCTC ACAGCCAGCGCATTATGGGCGCATTCACCATCTCCGCGCCATTGACGGTG TTCGTGTGGATGGTGTCGGTGGGAGTCATCGGCATCAATATCTTCATCGT GGGCGGTTTCCTGGTGGAACAAGGGGATTCCAAGAGCGGCGGGGAGTGGC TGTACGCGGGCGCGGCTCTTGGGGGCTTCCTATACCTCGGCTTCATCTTG TTCCTCATGTGGGAGGACCTCCGCAAGCTTAGGAGCCAGGGGTGCGCGAT ATTCATGAAGCTCGGCACCTACGACGTGGTTGGCGGTTATTCCTACTCGG CACCGGACACTTTCGGGCAGGACGACTCCCACGACGGCTGTAGCGGTGTA GAACGCTCAGGAGGGTTTCCGTCCGAAGACGACGACAAGCAGCCGCTCGC GCCGCAGCTAGGCGCCGGGTCCTCGGCGGCCGTTGGGTCTGCTTATGCAC CCGTCAGTGGGGGGCCGAACGACAGCCGGGAAGGGAATAGTGGAGAGAAT GGCGCCATAAGAGGGGAGAACGGGAGGGGGTCGGTAGCGCGAGCTGAGGA CGCGCATCGAAATGGCGAGGGACGGGGAGATTCGAGAGTGTAATCGTCGC GGCTGGCGTGGAGGGGGTGTCTGGTTTGAGCGATAGAGCGAGCGACTCGC TTTCTTTTCGACG
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Coding sequence (CDS) from alignment at S-dermatodea_contig11701:4869..6881-

>mRNA_S-dermatodea_contig11701.1083.1 ID=mRNA_S-dermatodea_contig11701.1083.1|Name=mRNA_S-dermatodea_contig11701.1083.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1644bp|location=Sequence derived from alignment at S-dermatodea_contig11701:4869..6881- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGACGGGGACGTACGCGGGGCAGTTTGTGATGGAAGGCTTCCTTCAGCT
CAAAATCCCGAAGTGGCAGAGGGTGCTGCTCACGCGAGTCATCGCCCTGG
GCCCCGCACTCGCGGTGACGGTGTTCATGGGGGGGGATATCCGCGCTACG
GACCGCATGAGCGCTTGGCTGAATGTGCTGCAGAGCCTGCAGCTGCCGTT
CGCGATCATCCCGCTCCTGACCTTTTGTAACAGATGACGGGGACGTACGC
GGGGCAGTTTGTGATGGAAGGCTTCCTTCAGCTCAAAATCCCGAAGTGGC
AGAGGGTGCTGCTCACGCGAGTCATCGCCCTGGGCCCCGCACTCGCGGTG
ACGGTGTTCATGGGGGGGGATATCCGCGCTACGGACCGCATGAGCGCTTG
GCTGAATGTGCTGCAGAGCCTGCAGCTGCCGTTCGCGATCATCCCGCTCC
TGACCTTTTGTAACAGCCAGCGCATTATGGGCGCATTCACCATCTCCGCG
CCATTGACGGTGTTCGTGTGGATGGTGTCGGTGGGAGTCATCGGCATCAA
TATCTTCATCGTGGGCGGTTTCCTGGTGGAACAAGGGGATTCCAAGAGCG
GCGGGGAGTGGCTGTACGCGGGCGCGGCTCTTGGGGGCTTCCTATACCTC
GGCTTCATCTTGTTCCTCATGTGGGAGGACCTCCGCAAGCTTAGGAGCCA
GGGGTGCGCGATATTCATGAAGCTCGGCACCTACGACGTGGTTGGCGGTT
ATTCCTACTCGGCACCGGACACTTTCGGGCAGGACGACTCCCACGACGGC
TGTAGCGGTGTAGAACGCTCAGGAGGGTTTCCGTCCGAAGACGACGACAA
GCAGCCGCTCGCGCCGCAGCTAGGCGCCGGGTCCTCGGCGGCCGTTGGGT
CTGCTTATGCACCCGTCAGTGGGGGGCCGAACGACAGCCGGGAAGGGAAT
AGTGGAGAGAATGGCGCCATAAGAGGGGAGAACGGGAGGGGGTCGGTAGC
GCGAGCTGAGGACGCGCATCGAAATGGCGAGGGACGGGGAGATTCGAGAG
TGTAACCAGCGCATTATGGGCGCATTCACCATCTCCGCGCCATTGACGGT
GTTCGTGTGGATGGTGTCGGTGGGAGTCATCGGCATCAATATCTTCATCG
TGGGCGGTTTCCTGGTGGAACAAGGGGATTCCAAGAGCGGCGGGGAGTGG
CTGTACGCGGGCGCGGCTCTTGGGGGCTTCCTATACCTCGGCTTCATCTT
GTTCCTCATGTGGGAGGACCTCCGCAAGCTTAGGAGCCAGGGGTGCGCGA
TATTCATGAAGCTCGGCACCTACGACGTGGTTGGCGGTTATTCCTACTCG
GCACCGGACACTTTCGGGCAGGACGACTCCCACGACGGCTGTAGCGGTGT
AGAACGCTCAGGAGGGTTTCCGTCCGAAGACGACGACAAGCAGCCGCTCG
CGCCGCAGCTAGGCGCCGGGTCCTCGGCGGCCGTTGGGTCTGCTTATGCA
CCCGTCAGTGGGGGGCCGAACGACAGCCGGGAAGGGAATAGTGGAGAGAA
TGGCGCCATAAGAGGGGAGAACGGGAGGGGGTCGGTAGCGCGAGCTGAGG
ACGCGCATCGAAATGGCGAGGGACGGGGAGATTCGAGAGTGTAA
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