mRNA_S-dermatodea_contig1170.1082.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1170.1082.1
Unique NamemRNA_S-dermatodea_contig1170.1082.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1170.1082.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1170contigS-dermatodea_contig1170:12119..12382 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size226
Cds size120
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1170.1082.1prot_S-dermatodea_contig1170.1082.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1170 12224..12382 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924214.5415423-UTR-S-dermatodea_contig1170:12118..122231622924214.5415423-UTR-S-dermatodea_contig1170:12118..12223Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1170 12119..12223 -
1694079098.2370212-UTR-S-dermatodea_contig1170:12118..122231694079098.2370212-UTR-S-dermatodea_contig1170:12118..12223Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1170 12119..12223 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924214.549654-CDS-S-dermatodea_contig1170:12223..122891622924214.549654-CDS-S-dermatodea_contig1170:12223..12289Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1170 12224..12289 -
1694079098.2455156-CDS-S-dermatodea_contig1170:12223..122891694079098.2455156-CDS-S-dermatodea_contig1170:12223..12289Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1170 12224..12289 -
1622924214.559328-CDS-S-dermatodea_contig1170:12328..123821622924214.559328-CDS-S-dermatodea_contig1170:12328..12382Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1170 12329..12382 -
1694079098.2540908-CDS-S-dermatodea_contig1170:12328..123821694079098.2540908-CDS-S-dermatodea_contig1170:12328..12382Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1170 12329..12382 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1170.1082.1

>prot_S-dermatodea_contig1170.1082.1 ID=prot_S-dermatodea_contig1170.1082.1|Name=mRNA_S-dermatodea_contig1170.1082.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=40bp
KGGSTISVTAGTRLPFSGWSQENKTIKQLDTGDLILQRL*
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mRNA from alignment at S-dermatodea_contig1170:12119..12382-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1170.1082.1 ID=mRNA_S-dermatodea_contig1170.1082.1|Name=mRNA_S-dermatodea_contig1170.1082.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=264bp|location=Sequence derived from alignment at S-dermatodea_contig1170:12119..12382- (Saccorhiza dermatodea SderLu1190fm monoicous)
AAGGGGGGTTCTACAATATCTGTCACGGCAGGAACGCGTCTGCCGTTCTC
AGGGGTCCCAACAAAACAAAACACACAAATGTGCCGTTCTCAGTGGTCCC
AAGAAAACAAAACAATTAAACAGCTCGATACCGGCGACCTCATACTGCAG
CGTCTGTGACAGCAAAGACAGGAGTACGTAAGTGTCAGAACCTGTTCGAA
TCGAACAAGTCGAGGCATCAAGGCTGTGGTCAAAATCGCGTGGGCGGCAA
CGCACCACGGTTCC
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Coding sequence (CDS) from alignment at S-dermatodea_contig1170:12119..12382-

>mRNA_S-dermatodea_contig1170.1082.1 ID=mRNA_S-dermatodea_contig1170.1082.1|Name=mRNA_S-dermatodea_contig1170.1082.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=240bp|location=Sequence derived from alignment at S-dermatodea_contig1170:12119..12382- (Saccorhiza dermatodea SderLu1190fm monoicous)
AAGGGGGGTTCTACAATATCTGTCACGGCAGGAACGCGTCTGCCGTTCTC
AGGGAAGGGGGGTTCTACAATATCTGTCACGGCAGGAACGCGTCTGCCGT
TCTCAGGGTGGTCCCAAGAAAACAAAACAATTAAACAGCTCGATACCGGC
GACCTCATACTGCAGCGTCTGTGATGGTCCCAAGAAAACAAAACAATTAA
ACAGCTCGATACCGGCGACCTCATACTGCAGCGTCTGTGA
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