mRNA_S-dermatodea_contig11686.1072.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11686.1072.1
Unique NamemRNA_S-dermatodea_contig11686.1072.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11686.1072.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11686contigS-dermatodea_contig11686:4170..6079 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size499
Cds size306
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11686.1072.1prot_S-dermatodea_contig11686.1072.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11686 4170..4475 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924213.7857292-CDS-S-dermatodea_contig11686:4169..44751622924213.7857292-CDS-S-dermatodea_contig11686:4169..4475Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11686 4170..4475 +
1694079097.7021813-CDS-S-dermatodea_contig11686:4169..44751694079097.7021813-CDS-S-dermatodea_contig11686:4169..4475Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11686 4170..4475 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924213.8001535-UTR-S-dermatodea_contig11686:4475..45241622924213.8001535-UTR-S-dermatodea_contig11686:4475..4524Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11686 4476..4524 +
1694079097.718022-UTR-S-dermatodea_contig11686:4475..45241694079097.718022-UTR-S-dermatodea_contig11686:4475..4524Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11686 4476..4524 +
1622924213.8130624-UTR-S-dermatodea_contig11686:5936..60791622924213.8130624-UTR-S-dermatodea_contig11686:5936..6079Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11686 5937..6079 +
1694079097.7292423-UTR-S-dermatodea_contig11686:5936..60791694079097.7292423-UTR-S-dermatodea_contig11686:5936..6079Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11686 5937..6079 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11686.1072.1

>prot_S-dermatodea_contig11686.1072.1 ID=prot_S-dermatodea_contig11686.1072.1|Name=mRNA_S-dermatodea_contig11686.1072.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=102bp
YVSAGGHVSIASTLLRGNRLAAIEVNDHHHHQQQEQQEQQQQQEQKKEHG
SNESGQTDTGKPASAAAADECGLNVSLGAGNVVMGNGLNGVMRTGHRGLR
L*
back to top

mRNA from alignment at S-dermatodea_contig11686:4170..6079+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11686.1072.1 ID=mRNA_S-dermatodea_contig11686.1072.1|Name=mRNA_S-dermatodea_contig11686.1072.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1910bp|location=Sequence derived from alignment at S-dermatodea_contig11686:4170..6079+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TACGTGTCCGCGGGAGGCCACGTCAGCATCGCCTCCACGCTGCTGCGGGG
CAATCGCTTGGCCGCTATTGAAGTTAACGACCACCACCACCACCAGCAGC
AGGAGCAGCAGGAGCAGCAGCAGCAGCAGGAGCAGAAGAAAGAACATGGC
AGCAACGAAAGTGGCCAGACGGATACAGGAAAACCTGCGTCTGCTGCTGC
TGCTGATGAATGCGGCCTCAACGTCTCGCTGGGAGCGGGCAATGTCGTGA
TGGGGAACGGGTTGAACGGCGTCATGCGCACGGGGCACCGCGGCTTACGA
TTGTGACGCAAGTCGCATGGCACGGCCAGCAACACACACAGCTGCAGTGT
TTATGGTTAGTAAACCCTGTGATTGCGCTTTGCACGTTTTTTATTATATT
TATACTGATGTATAGAGCAGGCACTTGAGGCTTTTTTTCATAAAAACCAT
ATTACGTAGGGTATTTGAAGCTTTTTGGAATTTGTTTTTTCCCCCTCCTG
TTTTTTCTTGGGCCGCACAGCCACTGTTTCCCATCGAAATCGCACACCTC
ACGGGCGTAGCCGTGTTTGCTACCTACTACTGGTATCATAGTGCATAGCT
CAAGTATACATAACGGCACGCGGGTTGGGACTTTTGTGTAGGTCTTGTTA
TTATGCTAGCCAATATGCGGTGATTGTGTGCTGCTTGTGTCGTCGGTGCC
ATAATTTAGTGTTCGCCTGACTGATCAGTGACGGGTTTTACCTGCCCTAT
ATACCCAGCGCACAGTTGCCTCCCTTGTTGTGTCTCCAGCGTATTTGGGT
CATTTCTTTTGTTGTCCTTCCTCGAGCGAGCGATTATTTTCGTTTTCGTT
TTTTCGCGTTTTTCGCGTTTTTTTGCGTTTTTGCTCTCGTTGATTCTTCT
CGGGATGTGTTGTACGGTATTATGTATGTATGCATGTGGTGATCGATTGC
ATTGGCTCAAAGTATGATGTATATGCGACCAGGGCCGAGTTCTGAGATGT
GTTAATATTGTGAGAACAGACAAACCAATGCAATTATCTATTATTGCCTC
TCGGTGTTGCCCCAGAGAGGCACTCCTTGTATTGGAACATGGTGGCAAGG
ATTTGATTGGACGGCGCGATATTTACACTGCTAACCATTGGAGATGGTCG
TAGTATCACAAGGTGAAGAGCCGACGGAGCGTTGTCCGATTCCGATGTCT
CTCTTTCGGTGTTTCCTCATATATCTCTGGTGTTCACTAATTCTTCTTTC
TCGTACTGACCAGGGACGGTACGGTGTATAGTAAGTAGAGTTCTGATTAG
TTATTTTTCTCCTTGACTCTTTGACCACAAGTCGGGTCGGATTAAGCCGA
TCGGCTGTACGTGTGCAGATCAATAAAAAAACCAAAGTAAGTGTAATACC
AGCAGGGTCTTTATTGCTGAGTTATCATGTAGAAGTAGACTTCTGATTTA
TGTATAGTTTTTTCTTCCTTGACTCTTTGCTATGACAATATGTATACTGT
AGCATCTGACCACAACAAGTGAGTCGGGCCGAATTAAGCCGATCGGCTAT
ACGTGTGCAAAGCATATCAAGCGATCCATTCAAATCGAACCTGTTCTTCT
TGTGGACGAAGCGTATATTTAGTATAATTAATCGATGGTGCAACGATGCA
GGGACTATCTAGGGTGTAGAATCTCGTACTCCGCTCATTCATGCATCACA
CACAACAGTAACAACTGTTGTTCTCGCTCACTTTATTTGTCGCTCTCTCT
CTCTCCCTTTCGACTAGGGCGGGACCAGTAAAAAGGACCGGGAGAAGCCG
GGACGAGGGACACTGACTGAGACAGGGAGCGAGACATAAAAACATTCCCA
ATAATATGCCCCAAGTATGGGGGGGGGCACAGCCAACCACCAAGAGGGCC
TAATCAAGAG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig11686:4170..6079+

>mRNA_S-dermatodea_contig11686.1072.1 ID=mRNA_S-dermatodea_contig11686.1072.1|Name=mRNA_S-dermatodea_contig11686.1072.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=612bp|location=Sequence derived from alignment at S-dermatodea_contig11686:4170..6079+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TACGTGTCCGCGGGAGGCCACGTCAGCATCGCCTCCACGCTGCTGCGGGG
CAATCGCTTGGCCGCTATTGAAGTTAACGACCACCACCACCACCAGCAGC
AGGAGCAGCAGGAGCAGCAGCAGCAGCAGGAGCAGAAGAAAGAACATGGC
AGCAACGAAAGTGGCCAGACGGATACAGGAAAACCTGCGTCTGCTGCTGC
TGCTGATGAATGCGGCCTCAACGTCTCGCTGGGAGCGGGCAATGTCGTGA
TGGGGAACGGGTTGAACGGCGTCATGCGCACGGGGCACCGCGGCTTACGA
TTGTGATACGTGTCCGCGGGAGGCCACGTCAGCATCGCCTCCACGCTGCT
GCGGGGCAATCGCTTGGCCGCTATTGAAGTTAACGACCACCACCACCACC
AGCAGCAGGAGCAGCAGGAGCAGCAGCAGCAGCAGGAGCAGAAGAAAGAA
CATGGCAGCAACGAAAGTGGCCAGACGGATACAGGAAAACCTGCGTCTGC
TGCTGCTGCTGATGAATGCGGCCTCAACGTCTCGCTGGGAGCGGGCAATG
TCGTGATGGGGAACGGGTTGAACGGCGTCATGCGCACGGGGCACCGCGGC
TTACGATTGTGA
back to top