mRNA_S-dermatodea_contig11683.1070.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11683.1070.1
Unique NamemRNA_S-dermatodea_contig11683.1070.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig11683.1070.1 vs. uniprot
Match: D8LD11_ECTSI (PPR_long domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LD11_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 4.220e-11
Identity = 46/114 (40.35%), Postives = 63/114 (55.26%), Query Frame = 1 
Query:    1 WKNSQVRGFYFPATTASGHPVASGSFVGASDGNSKQEEDGGREDCPGEEPAERERAPTP-TSPPSPIVWASPAFSRDMQVIDR-AWHVPILD-QDGGEGTQWLCIRLASFLRDD 333
            W+ SQVRGF+FPA   +      GS   ++                      R R P   +SPP PIV  SPAF+RDMQV+++ AWH+PI + QDG  GT+WLCI LA+ + ++
Sbjct:  594 WRKSQVRGFHFPAILPN-----DGSRGSSASSTXXXXXXXXXXXXXXXXXXXRHRPPEQGSSPPLPIVCPSPAFTRDMQVLNKHAWHIPIGEGQDGEPGTKWLCINLAALVEEE 702
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11683.1070.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LD11_ECTSI4.220e-1140.35PPR_long domain-containing protein n=2 Tax=Ectocar... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11683contigS-dermatodea_contig11683:4401..5686 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.4
Seed ortholog evalue1.7e-10
Seed eggNOG ortholog2880.D8LD11
KEGG koko:K22390
EggNOG free text desc.endonuclease activity
EggNOG OGsKOG4197@1,KOG4197@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Hectar predicted targeting categoryother localisation
Exons2
Model size600
Cds size375
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11683.1070.1prot_S-dermatodea_contig11683.1070.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11683 4401..5463 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924213.6624596-CDS-S-dermatodea_contig11683:4400..46341622924213.6624596-CDS-S-dermatodea_contig11683:4400..4634Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11683 4401..4634 +
1694079097.6475844-CDS-S-dermatodea_contig11683:4400..46341694079097.6475844-CDS-S-dermatodea_contig11683:4400..4634Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11683 4401..4634 +
1622924213.6789644-CDS-S-dermatodea_contig11683:5322..54631622924213.6789644-CDS-S-dermatodea_contig11683:5322..5463Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11683 5323..5463 +
1694079097.6576238-CDS-S-dermatodea_contig11683:5322..54631694079097.6576238-CDS-S-dermatodea_contig11683:5322..5463Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11683 5323..5463 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924213.6886613-UTR-S-dermatodea_contig11683:5463..56861622924213.6886613-UTR-S-dermatodea_contig11683:5463..5686Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11683 5464..5686 +
1694079097.665664-UTR-S-dermatodea_contig11683:5463..56861694079097.665664-UTR-S-dermatodea_contig11683:5463..5686Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11683 5464..5686 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11683.1070.1

>prot_S-dermatodea_contig11683.1070.1 ID=prot_S-dermatodea_contig11683.1070.1|Name=mRNA_S-dermatodea_contig11683.1070.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=125bp
WKNSQVRGFYFPATTASGHPVASGSFVGASDGNSKQEEDGGREDCPGEEP
AERERAPTPTSPPSPIVWASPAFSRDMQVIDRAWHVPILDQDGGEGTQWL
CIRLASFLRDDHHKPAEFRLEANR*
back to top

mRNA from alignment at S-dermatodea_contig11683:4401..5686+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11683.1070.1 ID=mRNA_S-dermatodea_contig11683.1070.1|Name=mRNA_S-dermatodea_contig11683.1070.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1286bp|location=Sequence derived from alignment at S-dermatodea_contig11683:4401..5686+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TGGAAGAACTCTCAAGTCCGAGGGTTTTACTTTCCGGCGACGACTGCTTC
TGGACACCCTGTCGCCTCTGGTAGTTTTGTCGGCGCTAGCGATGGCAACA
GCAAACAGGAGGAAGATGGCGGGCGGGAAGACTGCCCAGGCGAAGAGCCA
GCGGAGCGAGAGCGAGCTCCGACGCCGACGTCTCCGCCGTCGCCGATTGT
GTGGGCGTCCCCGGCCTTTTCCCGTGACATGCAGGTTGGATAGTTAATGC
ATACCAGAGTGTAGAGCGGGCAATTGTTTTCCTCGTTGTTTTTTTTTTTC
GGTATCGCGCTGCCAGCGGCCGACCTTGTATCCCGATTTTTTCCTGTGGC
CACAAAGGGATCAGCCTAATATCTCCCCCCGGTATGGTATCAATACTAGA
CCTTCGGTTTTCAACGCGGACTGGGTTTAGGACACTCCCTCCCCGCAGCT
CTTATCTTCTCTCCCGCCTACCTGTCTCGGATGTATATTTCTCGCGCTCT
CGCGCTTTTCGCGGCAGAGCGCAAAAATCAGTATTGACTTCGTCCGGGGT
TGAACCCGGGACCTCCGCCCTACCTACCAGATCGTTGGTTTTAACAGGAT
TTGAACCAAAAAGGGCGCGTGTGCGTGGGCCTGGGTGCCGAGAGCAAAAG
CCCGGTTAGAAGGATTGTGCGACTGCTGTGACAGGCTCGGCTCGAAACGA
CAAAACTAGTATCGGCATCCCTCTGGTGCTGTACCATTTCGGCCTATCAG
AGTACTCGTTTTTTTAAACGTTTGGCCAATTAAAAAAACTACAGACAATT
TCCCCCCTTTCTCTCTATAGTCAGCATCAAATCATCGAAACCAGCATCAC
CATCATGCGTGACTCGACAGGTTCGGTAACCCCCATGACCCTTGCTCTGC
CGAACACACGCGCTCGTAACAGGTCATCGACCGCGCATGGCACGTGCCCA
TCCTAGACCAAGACGGGGGGGAGGGGACCCAGTGGCTATGCATCAGGCTA
GCTTCATTTTTGCGAGATGACCACCACAAGCCGGCCGAGTTCCGACTGGA
GGCAAACAGATAACGCTGTGGCGATTCTCAGGGAGTCCTGATAGGGGAGG
GTTTCGAAATCGCGCGGCATCCTGCTGCTGTGTCGCGGCGGTTTTTTAGC
GTCTTTCAGTCGCGTCCAAGAAAGGAAGGGATGATGTTTAATAAAAACAA
CGGATATGTGATGATGCGTTTTATATTTTTATGACCGAGCGTTGGTGAAT
TCATTGCGCGCTCCGTGTTTGCTGCAGCACAAGGGT
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig11683:4401..5686+

>mRNA_S-dermatodea_contig11683.1070.1 ID=mRNA_S-dermatodea_contig11683.1070.1|Name=mRNA_S-dermatodea_contig11683.1070.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=750bp|location=Sequence derived from alignment at S-dermatodea_contig11683:4401..5686+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TGGAAGAACTCTCAAGTCCGAGGGTTTTACTTTCCGGCGACGACTGCTTC
TGGACACCCTGTCGCCTCTGGTAGTTTTGTCGGCGCTAGCGATGGCAACA
GCAAACAGGAGGAAGATGGCGGGCGGGAAGACTGCCCAGGCGAAGAGCCA
GCGGAGCGAGAGCGAGCTCCGACGCCGACGTCTCCGCCGTCGCCGATTGT
GTGGGCGTCCCCGGCCTTTTCCCGTGACATGCAGTGGAAGAACTCTCAAG
TCCGAGGGTTTTACTTTCCGGCGACGACTGCTTCTGGACACCCTGTCGCC
TCTGGTAGTTTTGTCGGCGCTAGCGATGGCAACAGCAAACAGGAGGAAGA
TGGCGGGCGGGAAGACTGCCCAGGCGAAGAGCCAGCGGAGCGAGAGCGAG
CTCCGACGCCGACGTCTCCGCCGTCGCCGATTGTGTGGGCGTCCCCGGCC
TTTTCCCGTGACATGCAGGTCATCGACCGCGCATGGCACGTGCCCATCCT
AGACCAAGACGGGGGGGAGGGGACCCAGTGGCTATGCATCAGGCTAGCTT
CATTTTTGCGAGATGACCACCACAAGCCGGCCGAGTTCCGACTGGAGGCA
AACAGATAAGTCATCGACCGCGCATGGCACGTGCCCATCCTAGACCAAGA
CGGGGGGGAGGGGACCCAGTGGCTATGCATCAGGCTAGCTTCATTTTTGC
GAGATGACCACCACAAGCCGGCCGAGTTCCGACTGGAGGCAAACAGATAA
back to top